Limits to the Thermal Tolerance of Corals Adapted to a Highly Fluctuating, Naturally Extreme Temperature Environment
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A Skeletal Sr/Ca Record Preserved Indipsastraea(Favia)Speciosaand Implications for Coral Sr/Ca Thermometry in Mid- Title Latitude Regions
A skeletal Sr/Ca record preserved inDipsastraea(Favia)speciosaand implications for coral Sr/Ca thermometry in mid- Title latitude regions Seo, Inah; Lee, Yong Il; Watanabe, Tsuyoshi; Yamano, Hiroya; Shimamura, Michiyo; Yoo, Chan Min; Hyeong, Author(s) Kiseong Geochemistry, Geophysics, Geosystems, 14(8), 2873-2885 Citation https://doi.org/10.1002/ggge.20195 Issue Date 2013-08-09 Doc URL http://hdl.handle.net/2115/55298 Rights Copyright(C)2013 American Geophysical Union Type article File Information GGG14_e20195.pdf Instructions for use Hokkaido University Collection of Scholarly and Academic Papers : HUSCAP Article Volume 14, Number 8 9 August 2013 doi: 10.1002/ggge.20195 ISSN: 1525-2027 A skeletal Sr/Ca record preserved in Dipsastraea (Favia) speciosa and implications for coral Sr/Ca thermometry in mid-latitude regions Inah Seo School of Earth and Environmental Sciences, Seoul National University, Seoul, South Korea Deep-Sea and Seabed Resources Research Division, Korea Institute of Ocean Science and Technology, Ansan, South Korea Yong Il Lee School of Earth and Environmental Sciences, Seoul National University, Seoul, South Korea Tsuyoshi Watanabe Department of Natural History Sciences, Faculty of Sciences, Hokkaido University, Hokkaido, Japan Hiroya Yamano Center for Environmental Biology and Ecosystem Studies, National Institute for Environmental Studies, Ibaraki, Japan Michiyo Shimamura Faculty of Earth Environmental Science, Hokkaido University, Hokkaido, Japan Chan Min Yoo and Kiseong Hyeong Deep-Sea and Seabed Resources Research Division, Korea Institute of Ocean Science and Technology, Ansan, South Korea ([email protected]) [1] A core (900 mm long) of the scleractinian coral Dipsastraea (Favia) speciosa was collected from Iki Island (33480N), Japan, one of the highest latitude coral reefs known to exist at present, where winter monthly mean sea surface temperature (SST) drops to 13C. -
The Earliest Diverging Extant Scleractinian Corals Recovered by Mitochondrial Genomes Isabela G
www.nature.com/scientificreports OPEN The earliest diverging extant scleractinian corals recovered by mitochondrial genomes Isabela G. L. Seiblitz1,2*, Kátia C. C. Capel2, Jarosław Stolarski3, Zheng Bin Randolph Quek4, Danwei Huang4,5 & Marcelo V. Kitahara1,2 Evolutionary reconstructions of scleractinian corals have a discrepant proportion of zooxanthellate reef-building species in relation to their azooxanthellate deep-sea counterparts. In particular, the earliest diverging “Basal” lineage remains poorly studied compared to “Robust” and “Complex” corals. The lack of data from corals other than reef-building species impairs a broader understanding of scleractinian evolution. Here, based on complete mitogenomes, the early onset of azooxanthellate corals is explored focusing on one of the most morphologically distinct families, Micrabaciidae. Sequenced on both Illumina and Sanger platforms, mitogenomes of four micrabaciids range from 19,048 to 19,542 bp and have gene content and order similar to the majority of scleractinians. Phylogenies containing all mitochondrial genes confrm the monophyly of Micrabaciidae as a sister group to the rest of Scleractinia. This topology not only corroborates the hypothesis of a solitary and azooxanthellate ancestor for the order, but also agrees with the unique skeletal microstructure previously found in the family. Moreover, the early-diverging position of micrabaciids followed by gardineriids reinforces the previously observed macromorphological similarities between micrabaciids and Corallimorpharia as -
Characterization of the Complete Mitochondrial Genome Sequences of Three Merulinidae Corals and Novel Insights Into the Phylogenetics
Characterization of the complete mitochondrial genome sequences of three Merulinidae corals and novel insights into the phylogenetics Wentao Niu*, Jiaguang Xiao*, Peng Tian, Shuangen Yu, Feng Guo, Jianjia Wang and Dingyong Huang Laboratory of Marine Biology and Ecology, Third Institute of Oceanography, Ministry of Natural Resources, Xiamen, Fujian, China * These authors contributed equally to this work. ABSTRACT Over the past few decades, modern coral taxonomy, combining morphology and molecular sequence data, has resolved many long-standing questions about sclerac- tinian corals. In this study, we sequenced the complete mitochondrial genomes of three Merulinidae corals (Dipsastraea rotumana, Favites pentagona, and Hydnophora exesa) for the first time using next-generation sequencing. The obtained mitogenome sequences ranged from 16,466 bp (D. rotumana) to 18,006 bp (F. pentagona) in length, and included 13 unique protein-coding genes (PCGs), two transfer RNA genes, and two ribosomal RNA genes . Gene arrangement, nucleotide composition, and nucleotide bias of the three Merulinidae corals were canonically identical to each other and consistent with other scleractinian corals. We performed a Bayesian phylogenetic reconstruction based on 13 protein-coding sequences of 86 Scleractinia species. The results showed that the family Merulinidae was conventionally nested within the robust branch, with H. exesa clustered closely with F. pentagona and D. rotumana clustered closely with Favites abdita. This study provides novel insight into the phylogenetics -
Recent Changes in Scleractinian Coral Nomenclature and Classification
Recent changes in Scleractinian coral nomenclature and classification. (A practical guide for coral and reef ecologists) Michel Pichon Adjunct Professor, James Cook University Australia Honorary Associate, Museum of Tropical Queensland, Townsville The following document provides information on changes which were introduced recently in the classification and nomenclature of scleractinian corals. Such changes stem to a large extent from the research activity and the syntheses carried out by the members of the international “Scleractinian Systematics Working Group” (SSWG) over the last few years. They are the result of a multi-pronged approach combining the information provided by the implementation of relatively new techniques, which have only recently been applied to scleractinian coral taxonomy. Such new tools include, inter alia, morphometrics, microstructural analyses, anatomy of soft parts and molecular genetics. The changes thus made to the nomenclature and classification of scleractinian corals underlie a move towards a classification reflecting more and more the phylogeny of various taxa, and as a result may place side by side morphologically very dissimilar species. Furthermore, such a move will require a re-definition of numerous genera (and of some families, which from a practical viewpoint is less critical) in accordance with the rules set out in the International Code of Zoological Nomenclature. Such a work is still to be done and a number of genera remain to this day without an adequate revised diagnostic morphological characterization. Several important studies are still in progress and one may expect additional changes in the near future. The present document, therefore, does not pretend to represent a complete revision of scleractinian coral taxonomy. -
SUPPLEMENTARY TABLE 3. TAXONOMIC REVISIONS. There Have Been a Number of Significant Taxonomic Revisions of Hard Corals in Recent Years (Arrigoni Et Al
SUPPLEMENTARY TABLE 3. TAXONOMIC REVISIONS. There have been a number of significant taxonomic revisions of hard corals in recent years (Arrigoni et al. 2014; Benzoni et al. 2007; Budd et al. 2012; Hoeksema 1989; Huang et al. 2014; Huang et al. 2011; Kitano et al. 2014; Wallace 1999; Wallace et al. 2012). Subsequently, species and genera have been synonymised and re-classified. Reproductive data in Supplementary Table 2 are based on species names used in the original literature, but have been updated here according to the World Register of Marine Species (WORMS) (Appeltans et al. 2012). Reference name WORMS nomenclature Authority Acropora formosa Acropora muricata (Linnaeus 1758) Acropora danai Acropora abrotanoides (Lamarck 1816) Acropora stoddarti Acropora divaricata (Dana 1846) Acropora tumida Acropora valida (Dana 1846) Alveopora fenestrata Acropora yongei (Veron and Wallace 1984) Barabattoia amicorum Dipsastraea amicorum (Milne Edwards & Haime 1849) Echinophyllia lamellosa nomen dubium nomen dubium Favia chinensis Euphyllia glabrescens (Chamisso and Eysenhardt 1821) Favia danae Dipsastraea danai (Milne Edwards 1857) Favia favus Dipsastraea favus (Forskål 1775) Favia maritima Dipsastraea maritima (Nemezo 1971) Favia matthaii Dipsastraea matthaii (Vaughan 1918) Favia maxima Dipsastraea maxima (Veron, Pichon & Wijsman-Best 1977) Favia pallida Dipsastraea pallida (Dana 1846) Favia rotumana Dipsastraea rotumana (Gardiner 1899) Favia speciosa Dipsastraea speciosa (Dana 1846) Favia stelligera Goniastrea stelligera (Dana 1846) Favia truncatus -
CORAL IDENTIFICATION Training Manual Scleractinian Corals Of
: The Coral Compactus The Coral WESTERN AUSTRALIA Hard Coral Genus Identification Guide Version 2 Zoe Richards The Coral Compactus: WESTERN AUSTRALIA Hard Coral Genus Identification Guide Version 2 Zoe Richards Photographs by Zoe Richards unless otherwise stated The intention of this identification guide is to provide coral identification material to support research, monitoring and biodiversity conservation in Western Australia. This guide provides an introduction to the key characteristics required to identify shallow- water, reef building corals to the genus level based on the revised scleractinian coral classification system as of May 2018. This manual should be used in conjunction with other taxonomic sources (see reference list) and with reference to the World Register of Marine Species (www.marinespecies.org) and the World List of Scleractinia (http://www.marinespecies.org/scleractinia). This manual has been created for individual, non-commercial purposes. All other uses require the author’s consent. Contact: Dr Zoe Richards Western Australian Museum 49 Kew Street Welshpool, Western Australia, 6106 Telephone | 08 9212 3872 Fax | 08 9212 3882 Email | [email protected] Published by the Western Australian Museum © Western Australian Museum, May 2018 Cover: Echinopora ashmorensis photographed at Ashmore Reef Hermatypic Coral Genera of Western Australia Revised classification as of May 2018 Family Acroporidae Genus Acropora • single axial polyp on the branch tip • range of morphologies • many radial (lateral) corallites -
The Status of Coral Reefs and Its Importance for Coastal Protection: a Case Study of Northeastern Hainan Island, South China Sea
sustainability Article The Status of Coral Reefs and Its Importance for Coastal Protection: A Case Study of Northeastern Hainan Island, South China Sea Meixia Zhao 1,2,3, Haiyang Zhang 1,2, Yu Zhong 1,2,4, Dapeng Jiang 5, Guohui Liu 1,2, Hongqiang Yan 1,2, Hongyu Zhang 1,2, Pu Guo 1,2, Cuitian Li 1,2,*, Hongqiang Yang 1,2, Tegu Chen 1,2 and Rui Wang 3 1 Key Laboratory of Ocean and Marginal Sea Geology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China 2 Innovation Academy of South China Sea Ecology and Environmental Engineering, Chinese Academy of Sciences, Guangzhou 510301, China 3 Guangxi Laboratory on the Study of Coral Reefs in the South China Sea, Guangxi University, Nanning 530004, China 4 Daya Bay Marine Biology Research Station, Chinese Academy of Sciences, Shenzhen 518121, China 5 Institute of Shenzhen Branch, CNOOC Ltd., Shenzhen 518054, China * Correspondence: [email protected] Received: 4 July 2019; Accepted: 8 August 2019; Published: 12 August 2019 Abstract: This study evaluated the status of coral communities at the fringing reefs in the northern South China Sea, and their potential role in maintaining nearby coastline stability of northeastern Hainan Island (Puqian Bay, Hainan Bay). Thirty-nine coral species were recorded with mean coral cover of 5.3%, and are dominated by massive Galaxea, Platygyra and Porites. The coral communities were clustered into two groups (Clu-HNB and Clu-PQB) corresponding to different stable coastal conditions. Coral communities at the Hainan Bay with higher diversity and greater cover corresponded to relatively stable coastline, whereas those at the southern Puqian Bay (with the lowest coral diversity and spatial coverage) corresponded to severe coastline erosion. -
Biogeography and Molecular Diversity of Coral Symbionts in The
Journal of Biogeography (J. Biogeogr.) (2017) 44, 674–686 ORIGINAL Biogeography and molecular diversity of ARTICLE coral symbionts in the genus Symbiodinium around the Arabian Peninsula † † Maren Ziegler1 , Chatchanit Arif1 , John A. Burt2, Sergey Dobretsov3, Cornelia Roder1,4, Todd C. LaJeunesse5 and Christian R. Voolstra1* 1Division of Biological and Environmental ABSTRACT Science and Engineering (BESE), Red Sea Aim Coral reefs rely on the symbiosis between scleractinian corals and intracel- Research Center, King Abdullah University of lular, photosynthetic dinoflagellates of the genus Symbiodinium making the Science and Technology (KAUST), Thuwal, Saudi Arabia, 2Center for Genomics and assessment of symbiont diversity critical to our understanding of ecological Systems Biology, New York University Abu resilience of these ecosystems. This study characterizes Symbiodinium diversity Dhabi, Abu Dhabi, United Arab Emirates, around the Arabian Peninsula, which contains some of the most thermally 3Department of Marine Science and Fisheries, diverse and understudied reefs on Earth. College of Agricultural and Marine Sciences, Location Shallow water coral reefs throughout the Red Sea (RS), Sea of Oman Sultan Qaboos University, Muscat, Oman, (SO), and Persian/Arabian Gulf (PAG). 4Shelf Sea System Ecology, Alfred Wegener Institute Helmholtz Centre for Polar and Methods Next-generation sequencing of the ITS2 marker gene was used to Marine Research, Germany, 5Department of assess Symbiodinium community composition and diversity comprising 892 Biology, Pennsylvania State University, samples from 46 hard and soft coral genera. University Park, PA 16802, USA Results Corals were associated with a large diversity of Symbiodinium, which usually consisted of one or two prevalent symbiont types and many types at low abundance. Symbiodinium communities were strongly structured according to geographical region and to a lesser extent by coral host identity. -
AC30 Doc. 32 A2
UNEP-WCMC technical report Animal taxonomy and nomenclature: New species and other proposed taxonomic and nomenclatural changes relating to CITES animal species Animal taxonomy and nomenclature: New species and other proposed taxonomic and nomenclatural changes relating to CITES animal species Prepared for The European Commission, Directorate General Environment, Directorate F - Global Sustainable Development, Unit F3 - Multilateral Environmental Cooperation, Brussels, Belgium. and the CITES Secretariat Published May 2018 Copyright European Commission and CITES Secretariat, 2018 Citation UNEP-WCMC. 2018. Animal taxonomy and nomenclature: New species and other proposed taxonomic and nomenclatural changes relating to CITES animal species. UNEP-WCMC, Cambridge. The UN Environment World Conservation Monitoring Centre (UNEP-WCMC) is the specialist biodiversity assessment centre of the UN Environment, the world’s foremost intergovernmental environmental organisation. The Centre has been in operation for over 35 years, combining scientific research with practical policy advice. This publication may be reproduced for educational or non-profit purposes without special permission, provided acknowledgement to the source is made. Reuse of any figures is subject to permission from the original rights holders. No use of this publication may be made for resale or any other commercial purpose without permission in writing from UN Environment. Applications for permission, with a statement of purpose and extent of reproduction, should be sent to the Director, -
An Introductory Guide to Coral Taxonomy
Name: Marine CORAL IDENTIFICATION GUIDE Date: marineeducation.com.au An Introductory Guide to Coral Taxonomy EuphylliaFlinders Reefbaliensis Moreton Bayshowing Marine Park calice July 2016opening. INDONESIA. Photograph: Emre Turak. Reprinted with permission[1]. [1] Veron J.E.N., Stafford-Smith M.G., Turak E. and DeVantier L.M. (2016). Corals of the World. Accessed 27 May 2019. http://www.coralsoftheworld.org/species_factsheets/species_factsheet_summary/euphyllia-baliensis/ © Marine Education 2019 By Gail Riches Name: Marine Game of Coral BINGO Date: marineeducation.com.au Activity: Choose 9 different words from the word box below (note: they are all coral Genus). Write them in the boxes below. This is your BINGO card. You are now ready to play BINGO! Acropora Montipora Galaxea Pocillopora Stylophora Favites Platygyra Caulastrea Lobophyllia Euphyllia Tubastrea Turbinaria Favia Porites Goniopora Fungia Isopora Merulina Pavona Leptoseris Diploria Heliofungia Instructions: When you hear the teacher call out one of the words on your BINGO card, mark it with a cross. When all 9 boxes are crossed, shout ‘BINGO!’. First person to shout BINGO wins. © Marine Education 2019 Coral Identification Guide 1 Name: Marine Hard Coral SHAPES Scleractinian Growth Forms Date: marineeducation.com.au Activity: Fill in the blanks with the following descriptive words.... Laminar Columnar Massive Encrusting Branching Foliaceous Free-living BRANCHING coral is which means it forms branches BOULDER coral is which means it is solid-like and mound-shaped PLATE coral is which means it is plate-like Encrusting coral is Columnar coral is which means it has a flat crust with the which means it forms thick columns same shape as the underlying reef (with no secondary branches) Foliose coral is Solitary corals are which means it forms which means they are NOT shapes similar to foliage attached to the substrate (i.e. -
Qatar University College of Arts and Sciences Symbiotic Dinoflagellates Associated with Corals in Qatar: Characterization and Ph
QATAR UNIVERSITY COLLEGE OF ARTS AND SCIENCES SYMBIOTIC DINOFLAGELLATES ASSOCIATED WITH CORALS IN QATAR: CHARACTERIZATION AND PHYSIOLOGICAL RESPONSE TO ENVIRONMENTAL CHANGE. BY HANEEN IBRAHIM ELDOS A Thesis Submitted to the Faculty of the College of Arts and Sciences in Partial Fulfillment of the Requirements for the Degree of Masters of Science in Biological and Environmental Science June 2017 © 2017. Haneen. All Rights Reserved. COMMITTEE PAGE The members of the Committee approve the Thesis of Haneen eldos defended on 16/04/2017. Dr. Radhouan Ben-Hamadou Thesis/Dissertation Supervisor Dr. Samir Jaoua Co-Supervisor Dr. Nabil Zouari Committee Member Dr. Fahad Al-Jamali Committee Member Dr. Christopher Warren Committee Member Approved: Rashid Al-Kuwari, Dean, College of College of Arts and Sciences ii ABSTRACT ELDOS HANEEN IBRAHIM, Masters : June : [2017:], Biological and Environmental Science Title: Symbiotic Dinoflagellates Associated with Corals in Qatar: Characterization and Physiological responses to Environmental Change. Supervisor of Thesis: Dr. Radhouane Ben Hamadou. Studying coral reefs’ responses to environmental and anthropogenic stressors is crucial to ensure the development of appropriate conservation and restoration programs, especially in areas such as the Arabian Gulf where they are subjected to extreme seawater temperature stress and experiencing consistent losses in coverage and distribution. Coral bleaching events witnessed during the last decades in the Arabian Gulf are believed to be the result of the effect of heat events occurring more frequently in the region as a result of the global ocean warming. When corals are under thermal stress, their symbiotic zooxanthellae are affected, and their photosynthetic activity decreases until the stress disappears or until the zooxanthellae are expelled from the coral. -
Overview of the Taxonomy of Zooxanthellate Scleractinia
bs_bs_banner Zoological Journal of the Linnean Society, 2013. With 7 figures Overview of the taxonomy of zooxanthellate Scleractinia JOHN VERON* Coral Reef Research, 10 Benalla Road, Oak Valley, Townsville, QLD 4811, Australia University of Queensland, Brisbane, QLD 4064, Australia James Cook University, Townsville, QLD 4811, Australia Received 1 May 2013; revised 20 July 2013; accepted for publication 30 July 2013 Coral taxonomy has entered a historical phase where nomenclatorial uncertainty is rapidly increasing. The fundamental cause is mandatory adherence to historical monographs that lack essential information of all sorts, and also to type specimens, if they exist at all, that are commonly unrecognizable fragments or are uncharacteristic of the species they are believed to represent. Historical problems, including incorrect subsequent type species designations, also create uncertainty for many well-established genera. The advent of in situ studies in the 1970s revealed these issues; now molecular technology is again changing the taxonomic landscape. The competing methodologies involved must be seen in context if they are to avoid becoming an additional basis for continuing nomenclatorial instability. To prevent this happening, the International Commission on Zoological Nomenclature (ICZN) will need to focus on rules that consolidate well-established nomenclature and allow for the designation of new type specimens that are unambiguous, and which include both skeletal material and soft tissue for molecular study. Taxonomic and biogeographic findings have now become linked, with molecular methodologies providing the capacity to re-visit past taxonomic decisions, and to extend both taxonomy and biogeography into the realm of evolutionary theory. It is proposed that most species will ultimately be seen as operational taxonomic units that are human rather than natural constructs, which in consequence will always have fuzzy morphological, genetic, and distribution boundaries.