Structural Determinants for Substrate and Inhibitor Recognition by the Dopamine Transporter Okechukwu T

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Structural Determinants for Substrate and Inhibitor Recognition by the Dopamine Transporter Okechukwu T Duquesne University Duquesne Scholarship Collection Electronic Theses and Dissertations Fall 2005 Structural Determinants for Substrate and Inhibitor Recognition by the Dopamine Transporter Okechukwu T. Ukairo Follow this and additional works at: https://dsc.duq.edu/etd Recommended Citation Ukairo, O. (2005). Structural Determinants for Substrate and Inhibitor Recognition by the Dopamine Transporter (Doctoral dissertation, Duquesne University). Retrieved from https://dsc.duq.edu/etd/1297 This Immediate Access is brought to you for free and open access by Duquesne Scholarship Collection. It has been accepted for inclusion in Electronic Theses and Dissertations by an authorized administrator of Duquesne Scholarship Collection. For more information, please contact [email protected]. STRUCTURAL DETERMINANTS FOR SUBSTRATE AND INHIBITOR RECOGNITION BY THE DOPAMINE TRANSPORTER A Dissertation Presented to the Graduate School of Pharmaceutical Sciences Of Duquesne University In Partial Fulfillment of the Requirements for the Degree Of Doctor of Philosophy Pharmacology and Toxicology By Okechukwu T. Ukairo December 9, 2005 ii COPYRIGHT NOTICE The information contained within this document is protected under the copyright laws of the United States of America. Duplication of this document is prohibited without the written permission of the copyright holder. iii ACKNOWLEDGEMENTS I would like to express my sincere gratitude to Dr. Chris Surratt, my thesis advisor, for his years of support and guidance. Dr. Surratt has been a great mentor and I’ve become a better scientist under his guidance. I am also deeply grateful to members of my dissertation committee, Drs. Paula Witt-Enderby, Wilson Meng, David Johnson and John Pollock for their invaluable suggestions and continued encouragement throughout the course of my research. I am particularly indebted to Dr Pollock for his help with confocal microscopy experiments. Dr. Pollock was unstinting in his help and I have constantly drawn from his expert knowledge and good advice. I extend special thanks to Dr. Simon Watkins of the University of Pittsburgh, PA for allowing me the use of his laboratory facilities. I gratefully acknowledge the help I received from Suneetha Ramanujapuram, Corry Bondi, Stephen Pan, and Mike Schmidt in carrying out some of the experiments. Drs. Doug Bricker, Fred Fotchman, Thomas Mattei, and Wilson Meng have been a source of good counsel and encouragement and I am deeply grateful to them. My sojourn at Duquesne University has been a wonderful and rewarding experience due to the love and support of great friends such as Nick and Lisa Radio, Dr. Viji Pokala, and Jeff Kovacs. They continuously challenged me in their respective ways to become a better and more focused graduate student. My sincere and heartfelt thanks to my wife, Stella, and our kids, Lulu and Toby, for their selfless understanding and patience and without whom all these wouldn’t have been possible. iv TABLE OF CONTENTS PAGES I. INTRODUCTION ..............................................................................................1 A. Overview......................................................................................................1 B. Statement of the problem.............................................................................4 C. Literature Survey .........................................................................................7 1. Structure of the Dopamine Transporter ....................................................7 2. Substrate and Inhibitor Selectivity of the DAT.........................................10 Benztropines ............................................................................................11 GBR Compounds .....................................................................................12 Mazindol...................................................................................................13 WIN-type of compounds...........................................................................13 4-ARA-127 ...............................................................................................14 3. Structure-Function Analysis of the Dopamine Transporter .....................15 a. Transmembrane (TM) domains...........................................................15 b. Extracellular loops (ECL).....................................................................24 c. Intracellular loops (ICL) .......................................................................26 4. Regulation of DAT Function....................................................................27 a. Post-translational modification ............................................................27 b. Protein-protein interactions .................................................................29 c. Transporter oligomerization.................................................................31 II. MATERIALS AND METHODS ......................................................................33 A. Materials and Equipment ...........................................................................33 1. Facilities..................................................................................................33 v 2. Cell lines...............................................................................................33 3. Chemicals and Drugs ...........................................................................33 4. Materials...............................................................................................37 5. Equipment ............................................................................................38 6. Computer Software...............................................................................39 B. Methodology and Procedures ....................................................................40 1. Cell culture..............................................................................................40 2. Site- directed mutagenesis .....................................................................41 3. Cell Transfections ...................................................................................43 4. Immunocytochemistry and confocal microscopy.....................................45 5. [3H]-Dopamine saturation uptake assays................................................46 6. [3H]-Dopamine uptake inhibition assays .................................................47 7. [3H]WIN35,428 saturation binding assays...............................................48 8. [3H]WIN35,428 binding inhibition assays ................................................48 9. Protein assays ........................................................................................50 III. RESULTS AND DISCUSSION .....................................................................52 A. Results.......................................................................................................52 1. Expression, localization and function of WT DAT and D79 mutant DATs .....................................................................................................................52 2. Assessing the role of DAT TM 1 D79 residue in dopamine uptake.........56 3. Effect of DAT inhibitors on CHO cells stably expressing WT or D79E DAT .....................................................................................................................60 vi 4. Effects of cell age, density and DAT cell surface expression on the DUIPs of classical DAT inhibitors............................................................................67 B. Discussion..................................................................................................74 IV. CONCLUSIONS ...........................................................................................86 V. APPENDICES ...............................................................................................87 VI. REFERENCES.............................................................................................91 VII. ABSTRACT...............................................................................................101 vii LIST OF TABLES PAGES Table 1. Effect of DAT substrates on CHO cells stably expressing WT and D79E DAT. ................................................................................................................................. 59 Table 2. Dopamine uptake inhibition potencies and binding affinities of structurally diverse DAT inhibitors at CHO cells stably expressing WT or D79E DAT. ................................................................................................................................. 65 Table 3. Dopamine uptake inhibition potencies and binding affinities of benztropine and its analogs at CHO cells stably expressing WT or D79E DAT.. 66 Table 4. Effect of DAT blockers on WT DAT-CHO cells of different passage numbers........................................................................................................................... 69 Table 5. Effect of cell density on the DUIP and binding affinity of cocaine at WT DAT-CHO cells. .............................................................................................................. 70 Table 6. Effects of DAT cell surface expression on the DUIP of cocaine ............ 71 Table 7. Kinetic and binding characteristics of rDAT wild-type in CHO cells of different passage numbers. .......................................................................................... 73 viii LIST OF FIGURES PAGES
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