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Download Full Issue ISSN:2320-8694 JEBAS Journal of Experimental Biology And Agricultural Sciences Volume 7 || Issue III || June, 2019 Production and Hosting by Horizon Publisher India[HPI] (http://www.horizonpublisherindia.in) All rights reserved. ISSN:2320-8694 ISSN:2320 -8694 Journal of Experimental Biology AndVolume Agricultural 7 Issue I ebruary, Sciences 2019 Volume 7 Issue I ebruary, 2019 JEBAS ISSN No. 2320 – 8694 Peer Reviewed - open access journal Common Creative License - NC 4.0 Volume No – 7 Issue No – III June, 2019 Journal of Experimental Biology and Agricultural Sciences Journal of Experimental Biology and Agricultural Sciences (JEBAS) is an online platform for the advancement and rapid dissemination of scientific knowledge generated by the highly motivated researchers in the field of biological sciences. JEBAS publishes high-quality original research and critical up-to-date review articles covering all the aspects of biological sciences. Every year, it publishes six issues. The JEBAS is an open access journal. Anyone interested can download full text PDF without any registration. JEBAS has been accepted by EMERGING SOURCES CITATION INDEX (Thomson Reuters – Web of Science database), CABI, INDEX COPERNICUS INTERNATIONAL (Poland), AGRICOLA (USA), CAS (ACS, USA), CABI – Full Text (UK), AGORA (FAO-UN), OARE (UNEP), J gate, EIJASR, DRIJ and Indian Science Abstracts (ISA, NISCAIR) like well reputed indexing database. [HORIZON PUBLISHER INDIA [HPI] http://www.horizonpublisherindia.in/] JEBAS Editorial Board Editorial Board Editor-in-Chief Prof Y. Norma-Rashid (University of Malaya, Kuala Lumpur) [email protected] Co-Editor-in-Chief Dr. Kuldeep Dhama, M.V.Sc., Ph.D. NAAS Associate, Principal Scientist, IVRI, Izatnagar India - 243 122 [email protected] Managing - Editor Kamal K Chaudhary, Ph.D. (India) [email protected] Dr. Anusheel Varshney University of Salford United Kingdom [email protected] Technical Editors Dr. Gary Straquadine Vice Chancellor – USU Eastern Campus, Utah State University Eastern, 2581 West 5200 South, Rexburg, Idaho, 83440 Email: [email protected] Hafiz M. N. Iqbal (Ph.D.) Research Professor, Tecnologico de Monterrey,School of Engineering and Sciences, Campus Monterrey,Ave. Eugenio Garza Sada 2501, Monterrey, N. L., CP 64849, Mexico Tel.: +52 (81) 8358-2000Ext.5561-115 E-mail: [email protected]; [email protected] Prof. Dr. Mirza Barjees Baigis Professor of Extension (Natural Resource Management), Department of Agricultural Extension and Rural Society, College of Food and Agriculture Sciences, King Saud University, P.O. Box 2460, Riyadh 11451 Kingdom of Saudi Arabia Email: [email protected] Dr. B L Yadav Head – Botany, MLV Govt. College, Bhilwara, India E mail: [email protected] Dr. K L Meena Associate Professor – Botany, MLV Govt. College, Bhilwara, India E mail: [email protected] JEBAS Dr. Yashpal S. Malik ICAR – National FellowIndian Veterinary Research Institute (IVRI) Izatnagar 243 122, Bareilly, Uttar Pradesh, India Professor Dr. Muhammad Mukhtar Professor of Biotechnology/Biochemistry American University of Ras Al KhaimahRas Al Khaimah, United Arab Emirates Abdulrasoul M. Alomran Prof. of Soil and Water Sciences Editor in Chief of JSSAS College of Food and Agricultural Sciences King Saud UniversityRiyadh, Saudi Arabia E-mail: [email protected] Associate Editors Dr. Sunil K. Joshi Laboratory Head, Cellular Immunology Investigator, Frank Reidy Research Center of Bioelectrics, College of Health Sciences, Old Dominion University, 4211 Monarch Way, IRP-2, Suite # 300, Norfolk, VA 23508 USA Email: [email protected] Dr.Vincenzo Tufarelli Department of Emergency and Organ Transplantation (DETO), Section of Veterinary Science and Animal Production, University of Bari ‘Aldo Moro’, s.p. Casamassima km 3, 70010 Valenzano, Italy Email: [email protected] Dr. Md. Moin Ansari Associate Professor-cum-Senior Scientist Division of Surgery and Radiology Faculty of Veterinary Sciences and Animal Husbandry Shuhama, Srinagar-190006, J&K, India Prof. Viliana Vasileva, PhD 89 "General Vladimir Vazov" Str. Institute of Forage Crops 5800 Pleven, BULGARIA E-mail: [email protected] Han Bao MSU-DOE Plant Research Laboratory Michigan State University Plant Biology Laboratories 612 Wilson Road, Room 222 East Lansing, MI 48824 JEBAS Assistant Editors Dr. Oadi Najim Ismail Matny Assistant Professor – Plant pathology Department of Plant Protection College Of Agriculture Science University Of Baghdad, Iraq E-mail: [email protected], [email protected] Najim Ismail OadiMatny Dr. Girijesh K. Patel E-mail: [email protected] University of South Alabama, USA Mitchell Cancer Institute 1660 Springhill Avenue Post Doc Fellow Dr Ayman EL Sabagh Assistant professor, agronomy department, faculty of agriculture [Details]kafresheikh university, Egypt E-mail: [email protected] Dr. Masnat Al Hiary Director of the Socio- economic Studies Directorate Socio-economic Researcher National Center for Agricultural Research and Extension (NCARE) P.O.Box 639 Baqa'a 19381 Jordan Safar Hussein Abdullah Al-Kahtani (Ph.D.) King Saud University-College of Food and Agriculture Sciences, Department of the Agricultural Economics P.O.Box: 2460 Riyadh 11451, KSA email: [email protected] Dr Ruchi Tiwari Assistant Professor (Sr Scale) Department of Veterinary Microbiology and Immunology, College of Veterinary Sciences, UP Pandit Deen Dayal Upadhayay Pashu Chikitsa Vigyan Vishwavidyalay Evum Go-Anusandhan Sansthan (DUVASU), Mathura, Uttar Pradesh, 281 001, India Email: [email protected] Dr. ANIL KUMAR (Ph.D.) Asstt. Professor (Soil Science) Farm Science Centre (KVK) Booh, Tarn Taran, Punjab (India) – 143 412 Email: [email protected] JEBAS INDEX PROTEIN LIGAND DOCKING: A MINI REVIEW WITH A CASE STUDY 243 — 248 DOI: 10.18006/2019.7(3).243.248 IMPACT OF FERTILIZER RECOMMENDATIONS BASED ON SOIL HEALTH CARD ON FERTILIZER 249 — 254 CONSUMPTION, PRODUCTIVITY AND PROFITABILITY OF FARMERS DOI: 10.18006/2019.7(3).249.254 SYNTHESIS, CHARACTERIZATION AND APPLICATION OF CHITOSAN- G- ACRYLAMIDE COMPOSITE 255 — 265 ON SOILS OF GANGETIC PLAIN REGION DOI: 10.18006/2019.7(3).255.265 GROWTH ANALYSIS OF AREA, PRODUCTION AND PRODUCTIVITY OF WHEAT CROP IN HARYANA 266 — 272 AND INDIA DOI: 10.18006/2019.7(3).273.272 PARAMETERS OF AMMI MODEL TO ASSESS G×E INTERACTION OF MALT BARLEY GENOTYPES 273 — 280 DOI: 10.18006/2019.7(3).273.280 GROWING CONDITION INFLUENCES VARIATION IN INITIATION TO WILTING OF FLOWERS OF 281 — 288 WINTER ANNUALS DOI: 10.18006/2019.7(3).281.288 INFLUENCE OF ENVIRONMENTAL FACTORS ON THE POPULATION DYNAMICS OF CHILLI THRIPS, 289 — 294 Scirtothrips dorsalis (HOOD) AND APHID, Aphis gossypii (GLOVER) DOI: 10.18006/2019.7(3).289.294 EFFECTIVE MANAGEMENT STRATEGY OF LITTLE LEAF DISEASE IN BRINJAL (Solanum melongena 295 — 300 L.) DOI: 10.18006/2019.7(3).295.300 EFFICACY OF SILVER NANOPARTICLES SYNTHESIZED ON Commiphora gileadensis (BALSAM) 301 — 307 EXTRACT AGAINST INFECTIOUS BACTERIA DOI: 10.18006/2019.7(3).301.307 BIODEGRADATION OF THE AZO DYE (REMAZOL BLACK B) BY Pseudomonas putida ISOLATED 308 — 315 FROM TEXTILE WASTEWATER SAMPLE DOI: 10.18006/2019.7(3).309.315 DOCUMENTATION OF PLANT DIVERSITY IN MARKETS OF GOALPARA DISTRICT OF ASSAM USED 316 — 328 FOR FOOD AND GENERAL HEALTHCARE DOI: 10.18006/2019.7(3).316.328 HORMONAL AND IMMUNOLOGICAL CHANGES DURING PREGNANCY PERIOD OF COWS 329 — 334 DOI: 10.18006/2019.7(3).329.334 In vitro CYTOTOXIC EFFECTS OF HYBRID GRAPHENE OXIDE NANOCOMPOSITES (hGONCs) ON 335 — 342 CRYOPRESERVED CAPRINE WHARTON’S JELLY DERIVED MESENCHYMAL STEM CELLS (WJ-MSCs) DOI: 10.18006/2019.7(3).335.342 Journal of Experimental Biology and Agricultural Sciences, June - 2019; Volume – 7(3) page 243 – 248 Journal of Experimental Biology and Agricultural Sciences http://www.jebas.org ISSN No. 2320 – 8694 PROTEIN LIGAND DOCKING: A MINI REVIEW WITH A CASE STUDY Hani S.H Mohammad Ali Department of Biological sciences, Faculty of science, King Abdulaziz University, Jeddah, Kingdom of Saudi Arabia Received – February 18, 2019; Revision – April 24, 2019; Accepted – May 26, 2019 Available Online – June 10, 2019 DOI: http://dx.doi.org/10.18006/2019.7(3).243.248 KEYWORDS ABSTRACT Protein Ligand protein docking is a molecular technique used to predict the structure to design a particular drug. It predicts the orientation and position of small molecule (ligand) when it is bound to a protein . It can Ligands be done by using different software's available. Molecular docking generates different structure ranked Docking on scoring function. In this review, we discussed some general information regarding molecular docking with an example of NS1 protein from yellow fever virus. NS1 * Corresponding author All the articles published by Journal of Experimental Biology and Agricultural Sciences are licensed under a E-mail: [email protected]; [email protected] (Hani S.H Mohammad Ali) Creative Commons Attribution-NonCommercial 4.0 International License Based on a work at www.jebas.org. Peer review under responsibility of Journal of Experimental Biology and Agricultural Sciences. Production and Hosting by Horizon Publisher India [HPI] (http://www.horizonpublisherindia.in/). All rights reserved. Protein ligand docking 244 1 Introduction to a target having a known sampling of probable conformation of ligand in a specific channel of target in a way to establish the The technique of molecular docking may be applied for modeling adjust conformation of the complex. This may be possible
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