Malliavin Calculus with Applications to Statistical Inference
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Cox Process Representation and Inference for Stochastic Reaction-Diffusion Processes
Edinburgh Research Explorer Cox process representation and inference for stochastic reaction-diffusion processes Citation for published version: Schnoerr, D, Grima, R & Sanguinetti, G 2016, 'Cox process representation and inference for stochastic reaction-diffusion processes', Nature Communications, vol. 7, 11729. https://doi.org/10.1038/ncomms11729 Digital Object Identifier (DOI): 10.1038/ncomms11729 Link: Link to publication record in Edinburgh Research Explorer Document Version: Publisher's PDF, also known as Version of record Published In: Nature Communications General rights Copyright for the publications made accessible via the Edinburgh Research Explorer is retained by the author(s) and / or other copyright owners and it is a condition of accessing these publications that users recognise and abide by the legal requirements associated with these rights. Take down policy The University of Edinburgh has made every reasonable effort to ensure that Edinburgh Research Explorer content complies with UK legislation. If you believe that the public display of this file breaches copyright please contact [email protected] providing details, and we will remove access to the work immediately and investigate your claim. Download date: 02. Oct. 2021 ARTICLE Received 16 Dec 2015 | Accepted 26 Apr 2016 | Published 25 May 2016 DOI: 10.1038/ncomms11729 OPEN Cox process representation and inference for stochastic reaction–diffusion processes David Schnoerr1,2,3, Ramon Grima1,3 & Guido Sanguinetti2,3 Complex behaviour in many systems arises from the stochastic interactions of spatially distributed particles or agents. Stochastic reaction–diffusion processes are widely used to model such behaviour in disciplines ranging from biology to the social sciences, yet they are notoriously difficult to simulate and calibrate to observational data. -
Poisson Representations of Branching Markov and Measure-Valued
The Annals of Probability 2011, Vol. 39, No. 3, 939–984 DOI: 10.1214/10-AOP574 c Institute of Mathematical Statistics, 2011 POISSON REPRESENTATIONS OF BRANCHING MARKOV AND MEASURE-VALUED BRANCHING PROCESSES By Thomas G. Kurtz1 and Eliane R. Rodrigues2 University of Wisconsin, Madison and UNAM Representations of branching Markov processes and their measure- valued limits in terms of countable systems of particles are con- structed for models with spatially varying birth and death rates. Each particle has a location and a “level,” but unlike earlier con- structions, the levels change with time. In fact, death of a particle occurs only when the level of the particle crosses a specified level r, or for the limiting models, hits infinity. For branching Markov pro- cesses, at each time t, conditioned on the state of the process, the levels are independent and uniformly distributed on [0,r]. For the limiting measure-valued process, at each time t, the joint distribu- tion of locations and levels is conditionally Poisson distributed with mean measure K(t) × Λ, where Λ denotes Lebesgue measure, and K is the desired measure-valued process. The representation simplifies or gives alternative proofs for a vari- ety of calculations and results including conditioning on extinction or nonextinction, Harris’s convergence theorem for supercritical branch- ing processes, and diffusion approximations for processes in random environments. 1. Introduction. Measure-valued processes arise naturally as infinite sys- tem limits of empirical measures of finite particle systems. A number of ap- proaches have been developed which preserve distinct particles in the limit and which give a representation of the measure-valued process as a transfor- mation of the limiting infinite particle system. -
Local Conditioning in Dawson–Watanabe Superprocesses
The Annals of Probability 2013, Vol. 41, No. 1, 385–443 DOI: 10.1214/11-AOP702 c Institute of Mathematical Statistics, 2013 LOCAL CONDITIONING IN DAWSON–WATANABE SUPERPROCESSES By Olav Kallenberg Auburn University Consider a locally finite Dawson–Watanabe superprocess ξ =(ξt) in Rd with d ≥ 2. Our main results include some recursive formulas for the moment measures of ξ, with connections to the uniform Brown- ian tree, a Brownian snake representation of Palm measures, continu- ity properties of conditional moment densities, leading by duality to strongly continuous versions of the multivariate Palm distributions, and a local approximation of ξt by a stationary clusterη ˜ with nice continuity and scaling properties. This all leads up to an asymptotic description of the conditional distribution of ξt for a fixed t> 0, given d that ξt charges the ε-neighborhoods of some points x1,...,xn ∈ R . In the limit as ε → 0, the restrictions to those sets are conditionally in- dependent and given by the pseudo-random measures ξ˜ orη ˜, whereas the contribution to the exterior is given by the Palm distribution of ξt at x1,...,xn. Our proofs are based on the Cox cluster representa- tions of the historical process and involve some delicate estimates of moment densities. 1. Introduction. This paper may be regarded as a continuation of [19], where we considered some local properties of a Dawson–Watanabe super- process (henceforth referred to as a DW-process) at a fixed time t> 0. Recall that a DW-process ξ = (ξt) is a vaguely continuous, measure-valued diffu- d ξtf µvt sion process in R with Laplace functionals Eµe− = e− for suitable functions f 0, where v = (vt) is the unique solution to the evolution equa- 1 ≥ 2 tion v˙ = 2 ∆v v with initial condition v0 = f. -
A. the Bochner Integral
A. The Bochner Integral This chapter is a slight modification of Chap. A in [FK01]. Let X, be a Banach space, B(X) the Borel σ-field of X and (Ω, F,µ) a measure space with finite measure µ. A.1. Definition of the Bochner integral Step 1: As first step we want to define the integral for simple functions which are defined as follows. Set n E → ∈ ∈F ∈ N := f :Ω X f = xk1Ak ,xk X, Ak , 1 k n, n k=1 and define a semi-norm E on the vector space E by f E := f dµ, f ∈E. To get that E, E is a normed vector space we consider equivalence classes with respect to E . For simplicity we will not change the notations. ∈E n For f , f = k=1 xk1Ak , Ak’s pairwise disjoint (such a representation n is called normal and always exists, because f = k=1 xk1Ak , where f(Ω) = {x1,...,xk}, xi = xj,andAk := {f = xk}) and we now define the Bochner integral to be n f dµ := xkµ(Ak). k=1 (Exercise: This definition is independent of representations, and hence linear.) In this way we get a mapping E → int : , E X, f → f dµ which is linear and uniformly continuous since f dµ f dµ for all f ∈E. Therefore we can extend the mapping int to the abstract completion of E with respect to E which we denote by E. 105 106 A. The Bochner Integral Step 2: We give an explicit representation of E. Definition A.1.1. -
Patterns in Random Walks and Brownian Motion
Patterns in Random Walks and Brownian Motion Jim Pitman and Wenpin Tang Abstract We ask if it is possible to find some particular continuous paths of unit length in linear Brownian motion. Beginning with a discrete version of the problem, we derive the asymptotics of the expected waiting time for several interesting patterns. These suggest corresponding results on the existence/non-existence of continuous paths embedded in Brownian motion. With further effort we are able to prove some of these existence and non-existence results by various stochastic analysis arguments. A list of open problems is presented. AMS 2010 Mathematics Subject Classification: 60C05, 60G17, 60J65. 1 Introduction and Main Results We are interested in the question of embedding some continuous-time stochastic processes .Zu;0Ä u Ä 1/ into a Brownian path .BtI t 0/, without time-change or scaling, just by a random translation of origin in spacetime. More precisely, we ask the following: Question 1 Given some distribution of a process Z with continuous paths, does there exist a random time T such that .BTCu BT I 0 Ä u Ä 1/ has the same distribution as .Zu;0Ä u Ä 1/? The question of whether external randomization is allowed to construct such a random time T, is of no importance here. In fact, we can simply ignore Brownian J. Pitman ()•W.Tang Department of Statistics, University of California, 367 Evans Hall, Berkeley, CA 94720-3860, USA e-mail: [email protected]; [email protected] © Springer International Publishing Switzerland 2015 49 C. Donati-Martin et al. -
Arxiv:Math/0409479V1
EXCEPTIONAL TIMES AND INVARIANCE FOR DYNAMICAL RANDOM WALKS DAVAR KHOSHNEVISAN, DAVID A. LEVIN, AND PEDRO J. MENDEZ-HERN´ ANDEZ´ n ABSTRACT. Consider a sequence Xi(0) of i.i.d. random variables. As- { }i=1 sociate to each Xi(0) an independent mean-one Poisson clock. Every time a clock rings replace that X-variable by an independent copy and restart the clock. In this way, we obtain i.i.d. stationary processes Xi(t) t 0 { } ≥ (i = 1, 2, ) whose invariant distribution is the law ν of X1(0). ··· Benjamini et al. (2003) introduced the dynamical walk Sn(t) = X1(t)+ + Xn(t), and proved among other things that the LIL holds for n ··· 7→ Sn(t) for all t. In other words, the LIL is dynamically stable. Subse- quently (2004b), we showed that in the case that the Xi(0)’s are standard normal, the classical integral test is not dynamically stable. Presently, we study the set of times t when n Sn(t) exceeds a given 7→ envelope infinitely often. Our analysis is made possible thanks to a con- nection to the Kolmogorov ε-entropy. When used in conjunction with the invariance principle of this paper, this connection has other interesting by-products some of which we relate. We prove also that the infinite-dimensional process t S n (t)/√n 7→ ⌊ •⌋ converges weakly in D(D([0, 1])) to the Ornstein–Uhlenbeck process in C ([0, 1]). For this we assume only that the increments have mean zero and variance one. In addition, we extend a result of Benjamini et al. -
Cox Process Functional Learning Gérard Biau, Benoît Cadre, Quentin Paris
Cox process functional learning Gérard Biau, Benoît Cadre, Quentin Paris To cite this version: Gérard Biau, Benoît Cadre, Quentin Paris. Cox process functional learning. Statistical Inference for Stochastic Processes, Springer Verlag, 2015, 18 (3), pp.257-277. 10.1007/s11203-015-9115-z. hal- 00820838 HAL Id: hal-00820838 https://hal.archives-ouvertes.fr/hal-00820838 Submitted on 6 May 2013 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Cox Process Learning G´erard Biau Universit´ePierre et Marie Curie1 & Ecole Normale Sup´erieure2, France [email protected] Benoˆıt Cadre IRMAR, ENS Cachan Bretagne, CNRS, UEB, France3 [email protected] Quentin Paris IRMAR, ENS Cachan Bretagne, CNRS, UEB, France [email protected] Abstract This article addresses the problem of supervised classification of Cox process trajectories, whose random intensity is driven by some exoge- nous random covariable. The classification task is achieved through a regularized convex empirical risk minimization procedure, and a nonasymptotic oracle inequality is derived. We show that the algo- rithm provides a Bayes-risk consistent classifier. Furthermore, it is proved that the classifier converges at a rate which adapts to the un- known regularity of the intensity process. -
Functions in the Fresnel Class of an Abstract Wiener Space
J. Korean Math. Soc. 28(1991), No. 2, pp. 245-265 FUNCTIONS IN THE FRESNEL CLASS OF AN ABSTRACT WIENER SPACE J.M. AHN*, G.W. JOHNSON AND D.L. SKOUG o. Introduction Abstract Wiener spaces have been of interest since the work of Gross in the early 1960's (see [18]) and are currently being used as a frame work for the Malliavin calculus (see the first half of [20]) and in the study of the Fresnel and Feynman integrals. It is this last topic which concerns us in this paper. The Feynman integral arose in nonrelativistic quantum mechanics and has been studied, with a variety of different definitions, by math ematicians and, in recent years, an increasing number of theoretical physicists. The Fresnel integral has been defined in Hilbert space [1], classical Wiener space [2], and abstract Wiener space [13] settings and used as an approach to the Feynman integral. Such approaches have their shortcomings; for example, the class offunctions that can be dealt with is somewhat limited. However, these approaches also have some distinct advantages including the fact, seen most clearly in [14], that several different definitions of the Feynman integral exist and agree. A key hypothesis in most of the theorems about the Fresnel and Feynman integrals is that the functions involved are in the 'Fresnel class' of the Hilbert space being used. Theorem 2 below is a general result insuring membership in :F(B), the Fresnel class of an abstract Wiener space B. :F(B) consists of all 'stochastic Fourier transforms' of certain Borel measures of finite variation. -
Spatio-Temporal Cluster Detection and Local Moran Statistics of Point Processes
Old Dominion University ODU Digital Commons Mathematics & Statistics Theses & Dissertations Mathematics & Statistics Spring 2019 Spatio-Temporal Cluster Detection and Local Moran Statistics of Point Processes Jennifer L. Matthews Old Dominion University Follow this and additional works at: https://digitalcommons.odu.edu/mathstat_etds Part of the Applied Statistics Commons, and the Biostatistics Commons Recommended Citation Matthews, Jennifer L.. "Spatio-Temporal Cluster Detection and Local Moran Statistics of Point Processes" (2019). Doctor of Philosophy (PhD), Dissertation, Mathematics & Statistics, Old Dominion University, DOI: 10.25777/3mps-rk62 https://digitalcommons.odu.edu/mathstat_etds/46 This Dissertation is brought to you for free and open access by the Mathematics & Statistics at ODU Digital Commons. It has been accepted for inclusion in Mathematics & Statistics Theses & Dissertations by an authorized administrator of ODU Digital Commons. For more information, please contact [email protected]. ABSTRACT Approved for public release; distribution is unlimited SPATIO-TEMPORAL CLUSTER DETECTION AND LOCAL MORAN STATISTICS OF POINT PROCESSES Jennifer L. Matthews Commander, United States Navy Old Dominion University, 2019 Director: Dr. Norou Diawara Moran's index is a statistic that measures spatial dependence, quantifying the degree of dispersion or clustering of point processes and events in some location/area. Recognizing that a single Moran's index may not give a sufficient summary of the spatial autocorrelation measure, a local -
Log Gaussian Cox Processes
Log Gaussian Cox processes by Jesper Møller, Anne Randi Syversveen, and Rasmus Plenge Waagepetersen. Log Gaussian Cox processes JESPER MØLLER Aalborg University ANNE RANDI SYVERSVEEN The Norwegian University of Science and Technology RASMUS PLENGE WAAGEPETERSEN University of Aarhus ABSTRACT. Planar Cox processes directed by a log Gaussian intensity process are investigated in the univariate and multivariate cases. The appealing properties of such models are demonstrated theoretically as well as through data examples and simulations. In particular, the first, second and third-order properties are studied and utilized in the statistical analysis of clustered point patterns. Also empirical Bayesian inference for the underlying intensity surface is considered. Key words: empirical Bayesian inference; ergodicity; Markov chain Monte Carlo; Metropolis-adjusted Langevin algorithm; multivariate Cox processes; Neyman-Scott processes; pair correlation function; parameter estimation; spatial point processes; third- order properties. AMS 1991 subject classification: Primary 60G55, 62M30. Secondary 60D05. 1 Introduction Cox processes provide useful and frequently applied models for aggregated spatial point patterns where the aggregation is due to a stochastic environmental heterogeneity, see e.g. Diggle (1983), Cressie (1993), Stoyan et al. (1995), and the references therein. A Cox process is ’doubly stochastic’ as it arises as an inhomogeneous Poisson process with a random intensity measure. The random intensity measure is often specified by a random intensity function or as we prefer to call it an intensity process or surface. There may indeed be other sources of aggregation in a spatial point pattern than spatial heterogeneity. Cluster processes is a well-known class of models where clusters are generated by an unseen point process, cf. -
Cox Process Representation and Inference for Stochastic Reaction&Ndash
ARTICLE Received 16 Dec 2015 | Accepted 26 Apr 2016 | Published 25 May 2016 DOI: 10.1038/ncomms11729 OPEN Cox process representation and inference for stochastic reaction–diffusion processes David Schnoerr1,2,3, Ramon Grima1,3 & Guido Sanguinetti2,3 Complex behaviour in many systems arises from the stochastic interactions of spatially distributed particles or agents. Stochastic reaction–diffusion processes are widely used to model such behaviour in disciplines ranging from biology to the social sciences, yet they are notoriously difficult to simulate and calibrate to observational data. Here we use ideas from statistical physics and machine learning to provide a solution to the inverse problem of learning a stochastic reaction–diffusion process from data. Our solution relies on a non-trivial connection between stochastic reaction–diffusion processes and spatio-temporal Cox processes, a well-studied class of models from computational statistics. This connection leads to an efficient and flexible algorithm for parameter inference and model selection. Our approach shows excellent accuracy on numeric and real data examples from systems biology and epidemiology. Our work provides both insights into spatio-temporal stochastic systems, and a practical solution to a long-standing problem in computational modelling. 1 School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3JH, UK. 2 School of Informatics, University of Edinburgh, Edinburgh EH8 9AB, UK. 3 SynthSys, University of Edinburgh, Edinburgh EH9 3JD, UK. Correspondence and requests for materials should be addressed to G.S. (email: [email protected]). NATURE COMMUNICATIONS | 7:11729 | DOI: 10.1038/ncomms11729 | www.nature.com/naturecommunications 1 ARTICLE NATURE COMMUNICATIONS | DOI: 10.1038/ncomms11729 any complex behaviours in several disciplines originate process in terms of (stochastic) partial differential equations from a common mechanism: the dynamics of locally (SPDEs). -
Exact Bayesian Inference in Spatio-Temporal Cox Processes Driven by Multivariate Gaussian Processes
Exact Bayesian inference in spatio-temporal Cox processes driven by multivariate Gaussian processes Fl´avioB. Gon¸calvesa, Dani Gamermanb a Departamento de Estat´ıstica,Universidade Federal de Minas Gerais, Brazil b Departamento de M´etodos Estat´ısticos,Universidade Federal do Rio de Janeiro, Brazil Abstract In this paper we present a novel inference methodology to perform Bayesian in- ference for spatio-temporal Cox processes where the intensity function depends on a multivariate Gaussian process. Dynamic Gaussian processes are introduced to allow for evolution of the intensity function over discrete time. The novelty of the method lies on the fact that no discretisation error is involved despite the non-tractability of the likelihood function and infinite dimensionality of the problem. The method is based on a Markov chain Monte Carlo algorithm that samples from the joint pos- terior distribution of the parameters and latent variables of the model. A particular choice of the dominating measure to obtain the likelihood function is shown to be crucial to devise a valid MCMC. The models are defined in a general and flexible way but they are amenable to direct sampling from the relevant distributions, due to careful characterisation of its components. The models also allow for the inclu- sion of regression covariates and/or temporal components to explain the variability of the intensity function. These components may be subject to relevant interaction with space and/or time. Simulated examples illustrate the methodology, followed by concluding remarks. Key Words: Cox process, spatio-temporal, dynamic Gaussian process, exact inference, MCMC. 1Address: Av. Ant^onioCarlos, 6627 - DEST/ICEx/UFMG - Belo Horizonte, Minas Gerais, 31270-901, Brazil.