Microscopes UMDNS #: 12536 Date of Creation: October 29, 2015 Creator: Complied by Cassandra Stanco for Engineering World Health (EWH)
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Two-Photon Excitation, Fluorescence Microscopy, and Quantitative Measurement of Two-Photon Absorption Cross Sections
Portland State University PDXScholar Dissertations and Theses Dissertations and Theses Fall 12-1-2017 Two-Photon Excitation, Fluorescence Microscopy, and Quantitative Measurement of Two-Photon Absorption Cross Sections Fredrick Michael DeArmond Portland State University Let us know how access to this document benefits ouy . Follow this and additional works at: https://pdxscholar.library.pdx.edu/open_access_etds Part of the Physics Commons Recommended Citation DeArmond, Fredrick Michael, "Two-Photon Excitation, Fluorescence Microscopy, and Quantitative Measurement of Two-Photon Absorption Cross Sections" (2017). Dissertations and Theses. Paper 4036. 10.15760/etd.5920 This Dissertation is brought to you for free and open access. It has been accepted for inclusion in Dissertations and Theses by an authorized administrator of PDXScholar. For more information, please contact [email protected]. Two-Photon Excitation, Fluorescence Microscopy, and Quantitative Measurement of Two-Photon Absorption Cross Sections by Fredrick Michael DeArmond A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Applied Physics Dissertation Committee: Erik J. Sánchez, Chair Erik Bodegom Ralf Widenhorn Robert Strongin Portland State University 2017 ABSTRACT As optical microscopy techniques continue to improve, most notably the development of super-resolution optical microscopy which garnered the Nobel Prize in Chemistry in 2014, renewed emphasis has been placed on the development and use of fluorescence microscopy techniques. Of particular note is a renewed interest in multiphoton excitation due to a number of inherent properties of the technique including simplified optical filtering, increased sample penetration, and inherently confocal operation. With this renewed interest in multiphoton fluorescence microscopy, comes increased interest in and demand for robust non-linear fluorescent markers, and characterization of the associated tool set. -
Second Harmonic Imaging Microscopy
170 Microsc Microanal 9(Suppl 2), 2003 DOI: 10.1017/S143192760344066X Copyright 2003 Microscopy Society of America Second Harmonic Imaging Microscopy Leslie M. Loew,* Andrew C. Millard,* Paul J. Campagnola,* William A. Mohler,* and Aaron Lewis‡ * Center for Biomedical Imaging Technology, University of Connecticut Health Center, Farmington, CT 06030-1507 USA ‡ Division of Applied Physics, Hebrew University of Jerusalem, Jerusalem 91904, Israel Second Harmonic Generation (SHG) has been developed in our laboratories as a high- resolution non-linear optical imaging microscopy (“SHIM”) for cellular membranes and intact tissues. SHG is a non-linear process that produces a frequency doubling of the intense laser field impinging on a material with a high second order susceptibility. It shares many of the advantageous features for microscopy of another more established non-linear optical technique: two-photon excited fluorescence (TPEF). Both are capable of optical sectioning to produce 3D images of thick specimens and both result in less photodamage to living tissue than confocal microscopy. SHG is complementary to TPEF in that it uses a different contrast mechanism and is most easily detected in the transmitted light optical path. It also does not arise via photon emission from molecular excited states, as do both 1- and 2-photon excited fluorescence. SHG of intrinsic highly ordered biological structures such as collagen has been known for some time but only recently has the full potential of high resolution 3D SHIM been demonstrated on live cells and tissues. For example, Figure 1 shows SHIM from microtubules in a living organism, C. elegans. The images were obtained from a transgenic nematode that expresses a ß-tubulin-green fluorescent protein fusion and Figure 1 also shows the TPEF image from this molecule for comparison. -
Fv1000 Fluoview
Confocal Laser Scanning Biological Microscope FV1000 FLUOVIEW FLUOVIEW—Always Evolving FLUOVIEW–—From Olympus is Open FLUOVIEW—More Advanced than Ever The Olympus FLUOVIEW FV1000 confocal laser scanning microscope delivers efficient and reliable performance together with the high resolution required for multi-dimensional observation of cell and tissue morphology, and precise molecular localization. The FV1000 incorporates the industry’s first dedicated laser light stimulation scanner to achieve simultaneous targeted laser stimulation and imaging for real-time visualization of rapid cell responses. The FV1000 also measures diffusion coefficients of intracellular molecules, quantifying molecular kinetics. Quite simply, the FLUOVIEW FV1000 represents a new plateau, bringing “imaging to analysis.” Olympus continues to drive forward the development of FLUOVIEW microscopes, using input from researchers to meet their evolving demands and bringing “imaging to analysis.” Quality Performance with Innovative Design FV10i 1 Imaging to Analysis ing up New Worlds From Imaging to Analysis FV1000 Advanced Deeper Imaging with High Resolution FV1000MPE 2 Advanced FLUOVIEW Systems Enhance the Power of Your Research Superb Optical Systems Set the Standard for Accuracy and Sensitivity. Two types of detectors deliver enhanced accuracy and sensitivity, and are paired with a new objective with low chromatic aberration, to deliver even better precision for colocalization analysis. These optical advances boost the overall system capabilities and raise performance to a new level. Imaging, Stimulation and Measurement— Advanced Analytical Methods for Quantification. Now equipped to measure the diffusion coefficients of intracellular molecules, for quantification of the dynamic interactions of molecules inside live cell. FLUOVIEW opens up new worlds of measurement. Evolving Systems Meet the Demands of Your Application. -
Two-Photon Excitation Fluorescence Microscopy
P1: FhN/ftt P2: FhN July 10, 2000 11:18 Annual Reviews AR106-15 Annu. Rev. Biomed. Eng. 2000. 02:399–429 Copyright c 2000 by Annual Reviews. All rights reserved TWO-PHOTON EXCITATION FLUORESCENCE MICROSCOPY PeterT.C.So1,ChenY.Dong1, Barry R. Masters2, and Keith M. Berland3 1Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139; e-mail: [email protected] 2Department of Ophthalmology, University of Bern, Bern, Switzerland 3Department of Physics, Emory University, Atlanta, Georgia 30322 Key Words multiphoton, fluorescence spectroscopy, single molecule, functional imaging, tissue imaging ■ Abstract Two-photon fluorescence microscopy is one of the most important re- cent inventions in biological imaging. This technology enables noninvasive study of biological specimens in three dimensions with submicrometer resolution. Two-photon excitation of fluorophores results from the simultaneous absorption of two photons. This excitation process has a number of unique advantages, such as reduced specimen photodamage and enhanced penetration depth. It also produces higher-contrast im- ages and is a novel method to trigger localized photochemical reactions. Two-photon microscopy continues to find an increasing number of applications in biology and medicine. CONTENTS INTRODUCTION ................................................ 400 HISTORICAL REVIEW OF TWO-PHOTON MICROSCOPY TECHNOLOGY ...401 BASIC PRINCIPLES OF TWO-PHOTON MICROSCOPY ..................402 Physical Basis for Two-Photon Excitation ............................ -
SPARQ-Ed Risk Assessment Sheet : Immunofluorescence
SPARQ-ed Risk Assessment Sheet : Immunofluorescence Hazard Analyse / Evaluate Risk Overall Risk Category Description of Risk Source Current Controls Event Category Consequences Exposure Probability (see explanation on last page) Exposure PPE worn (gloves, closed Prob footwear, and safety Chemical exposure - VR R U O F C Exposure to Chemical Agents : Risk of Unusual : goggles provided). Use body contact, spills Unusual but eye and skin exposure to chemicals Immuno- AC Low Low Low Low Mod Subs of potentially harmful and splash and Other Contact Minor : General Possible: Less likely (such as fixation / permeabilisation fluorescence QP Low Low Low Low Low Mod Chemical chemicals/substances in inhalation (eg. 4% with Chemical or chemicals used would to occur with the buffer containing 4% staining not a UP Low Low Low Low Low Low fume cupboard/safety paraformaldehyde is Substance be irritants only. control measures but paraformaldehyde) throughout the common cabinet. MSDS available. irritant to eyes and not impossible. RP Low Low Low Low Low Low staining procedure. procedure. Well documented skin). C Low Low Low Low Low Low procedures. PI Low Low Low Low Low Low Personal precaution Exposure procedures to be Prob followed in case of VR R U O F C Sharps : Immunoflourescence is injury. PPE worn Sharps injury (cuts or Unusual : AC Low Low Low Low Mod Subs generally performed with sections on (wearing gloves, closed slicing of fingers) Immuno- Conceivable : Sharps slides or with cells on coverslips. shoes, lab coat and from broken Hitting Objects Minor : May require fluorescence injury is likely to QP Low Low Low Low Low Mod Immunofluorescence staining of cells Mechanical safety goggles are coverslips or pointed with Part of first aid for minor cuts. -
STED Fluorescence Microscopy: a Method of Resolution Enhancement Submitted by David Biss and Jason Neiser
STED Fluorescence Microscopy: A method of resolution enhancement Submitted by David Biss and Jason Neiser Introduction relaxed vibrational level of the ground electronic state. The microscope excitation light generates If geometrical aberrations are minimized in an a transition in the fluorophore from level L0 to optical system, the smallest spot size attainable is L1, a high vibrational level of the first excited the diffraction limited spot size. Confocal state. From here, the molecule undergoes a fast microscopy was the first method to extend vibrational decay from L1 to L2, and eventually resolution beyond the Abbe resolution limit and fluoresces to L3 by spontaneous emission. it added axial resolution to the system. This form of microscopy images a portion of the sample being investigated onto a confocal pinhole at the detection plane of the system. Since the invention of confocal microscopy other methods have been devised to reach beyond the standard diffraction limit. Some of these methods are 4π microscopy, two photon microscopy, near-field microscopy, and more recently, STimulated Emission Depletion (STED) fluorescence microscopy. [1, 2, 3] STED fluorescence microscopy takes standard fluorescence microscopy and introduces a technique to reduce the emitted spot size. STED microscopy uses stimulated emission to deplete fluorophores before they fluoresce. If this depletion occurs at the edges of the excited sample area the spot size (and volume) of the fluorescence can be reduced beyond the Fig. 1 Energy level diagram of a dye molecule. A short diffraction limit. wavelength pulse excites the molecule and it may be relaxed by either fluorescing or by stimulated emission via the STED Theory pulse. -
Super-Resolution STED Microscopy and Its Application in Neuroscience
Super-resolution STED microscopy and its application in neuroscience Katrin Willig 18th German-American Frontiers of Engineering Symposium Hamburg 20-23 March 2019 Nanoscale Microscopy and Molecular Physiology of the Brain MPI of Cluster of Excellence 171, Experimental DFG Research Center 103 Medicine 1 Resolution in far-field light microscopy diffraction limit: minimum resolvable distance l l a dmin d 2 nsina numerical aperture (NA) n: refractive index structure image “similar objects closer than about half the wavelength should not be distinguishable in a light microscope” Ernst Abbe 1873 2 Standard (confocal) vs. Superresolution (STED) 3 Confocal (fluorescence) microscopy x 200 nm Abbe‘s equation y λ d 2n sin a Excitation d Fluorescence Detection Dichroic Scanning Mirror 1 Device S1 Excitation Fluorescence S0 4 STED (STimulated Emission Depletion) microscopy x 200 nm Phase Plate y 0 2p STED Excitation d Fluorescence Detection Dichroic Dichroic Scanning Mirror 1 Mirror 2 Device Nobel Prize in Chemistry 2014 to Betzig, Hell & Moerner S1 "for the development of super-resolved fluorescence microscopy." . Excitation Stimul Emission STED beam: keeps molecules non-fluorescent Fluorescence S0 5 Diffraction limited resolution PSF 1 220 nm 0 -200 0 200 1.0 0.5 y 500 nm x Fluorescence 0.0 min max 0.0 0.5 1.0 1.5 I [GW/cm²] STED 6 Subdiffraction resolution Depletion distribution 1 132 nm 0 -200 0 200 1.0 0.5 y 500 nm Fluorescence x 0.0 min max 0.0 0.5 1.0 1.5 I [GW/cm²] STED 7 Subdiffraction resolution Depletion distribution 1 84 nm 0 -200 0 -
Super-Resolution STED Microscopy and Its Application in Neuroscience
Super-resolution STED microscopy and its application in neuroscience Katrin Willig Fluorescence microscopy is a widely used technique, especially in biology. It combines staining specificity with relatively simple imaging capabilities. Especially if applied in the far-field it is almost non-invasive and therefore ideal to study protein assemblies or dynamics in living cells, tissues or animals. Until recently it was widely accepted that far-field optical microscopes cannot visualize details closer than about half the wavelength of light. Therefore, electron microscopy is needed to reveal structural details at exceptionally high resolution, down to the molecular level. EM, though, lacks the ability to image dynamic changes of the same morphological structures; temporal information is only gathered via comparative studies prepared at different time-points. However, to understand how and why the sub-structure of cells changes, and what functional consequence this change induces, we need to visualize cells or even whole, intact living organism over extended periods of time, i.e. in longitudinal studies. However, given the poor optical resolution small sub- cellular structures have still not been accurately assessed by standard light microscopy techniques available due to the diffraction limited resolution of far-field light microscopy being ~200-300 nm. With the 2014 Nobel Prize in Chemistry ‘for the development of superresolved fluorescence microscopy’ for Betzig, Hell and Moerner, a novel family of light microscopy techniques became widely recognized, which surpass the limited resolution of light microscopy: The general terms ‘superresolution’ microscopy or ‘nanoscopy’ encompass several techniques, which can be divided in coordinate-targeted approaches (e.g. stimulated emission depletion microscopy (STED), reversible saturable optical fluorescent transition microscopy (RESOLFT)), and coordinate-stochastic approaches (e.g. -
Correlating STED and Synchrotron XRF Nano-Imaging Unveils
TOOLS AND RESOURCES Correlating STED and synchrotron XRF nano-imaging unveils cosegregation of metals and cytoskeleton proteins in dendrites Florelle Domart1,2,3, Peter Cloetens4, Ste´ phane Roudeau1,2, Asuncion Carmona1,2, Emeline Verdier3, Daniel Choquet3,5†, Richard Ortega1,2†* 1Chemical Imaging and Speciation, CENBG, Univ. Bordeaux, Gradignan, France; 2CNRS, IN2P3, CENBG, UMR 5797, Gradignan, France; 3Univ. Bordeaux, CNRS, Interdisciplinary Institute for Neuroscience, IINS, UMR 5297, Bordeaux, France; 4ESRF, the European Synchrotron, Grenoble, France; 5Univ. Bordeaux, CNRS, INSERM, Bordeaux Imaging Center, BIC, UMS, Bordeaux, France Abstract Zinc and copper are involved in neuronal differentiation and synaptic plasticity but the molecular mechanisms behind these processes are still elusive due in part to the difficulty of imaging trace metals together with proteins at the synaptic level. We correlate stimulated- emission-depletion microscopy of proteins and synchrotron X-ray fluorescence imaging of trace metals, both performed with 40 nm spatial resolution, on primary rat hippocampal neurons. We reveal the co-localization at the nanoscale of zinc and tubulin in dendrites with a molecular ratio of about one zinc atom per tubulin-ab dimer. We observe the co-segregation of copper and F-actin within the nano-architecture of dendritic protrusions. In addition, zinc chelation causes a decrease in the expression of cytoskeleton proteins in dendrites and spines. Overall, these results indicate *For correspondence: new functions for zinc and copper in the modulation of the cytoskeleton morphology in dendrites, a [email protected] mechanism associated to neuronal plasticity and memory formation. †These authors contributed equally to this work Competing interests: The Introduction authors declare that no The neurobiology of copper and zinc is a matter of intense investigation since they have been competing interests exist. -
NNT '09 Program
NNT '09 Program 9-Nov Wednesday, November 11 12:00 Exhibit set-up, Room J2/J3, San Jose Convention Center 12:00 Registration 17:00 Welcome Reception and Equipment Exhibit, Room J2/J3, San Jose Convention Center Thursday, November 12, Room J1/J4 , San Jose Convention Center Plenary Session - Session Chairs: S. Chou (Princeton) & L. Montelius (Lund) 8:15 Welcome: Stephen Chou and Christie Marrian 8:30 Plenary NNT is Losing the Propaganda War Fabian Pease Stanford University 9:00 Invited 1 Template Infrastructure for Nanoimprint Lithography Nobuhito Toyama Dai Nippon Printing 9:20 Invited 2 NaPANIL: Consolidation of Nanoimprinting for Production Jouni Ahopelto VTT Microsystems and Nanoelectronics 9:40 Invited 3 Shrink-Induced Nanostructures Michelle Khine University of California, Irvine 10:00 Break Magnetics/Biology/Solar - Session Chairs: G. Willson (U. Texas) & H. Schift (PSI) 10:30 Invited 4 The Nano-imprinting Process towards Patterned Media Manufacturing Tsai-Wei Wu HGST 10:50 c1 Large Scale Fabrication of Nanoimprinted Magnetic Nanoparticles with Self-Assembled Templates Wei Hu Stanford University 11:05 c2 Photocatalytic Nanolithography: An Emergent Patterning Technique Relevant to Biotechnology Jane P Bearinger LLNL 11:20 c3 Fabrication of 3D Cell Containers with Integrated Topography by Combined Microscale Arne Schleunitz Paul Scherrer Institut Thermoforming and Thermal Nanoimprint 11:35 c4 Nanoimprinting of Subphthalocyanines for Photovoltaic Applications Xiaogan Liang Lawrence Berkeley National Laboratory 11:50 c5 Nanopatterned anode for organic solar cell by nanoimprint Dae-Geun Choi Korea Institute of Machinery & Materials 12:05 Lunch Electronics/Optoelectronics - Session Chairs: J. Randall (Zyvex) and S. Matsui (Hyogo) 13:30 Invited 5 Nanoimprint lithography for organic thin film transistors Barbara Stadlober Joanneum Research 13:50 c6 Fabrication of organic TFT arrays on an A4-sized flexible sheet using microcontact printing Hiroshi Fujita Dai Nippon Printing Co., Ltd. -
Appendix 1: Confocal Microscopes
Appendix 1: Confocal Microscopes range of confocal microscopes is available - from the highly versatile but very expensive "top end" A instruments, to specialised high-speed imaging and even miniaturised medical instruments. Confocal microscopes are at the forefront of the upsurge in interest in light microscopy in the past 15 years. The technology is still evolving fast - so you should expect major changes and innovations in the coming years. This appendix gives an overview of the hardware for most of the laser scanning confocal microscopes currently available. Although not all manufacturers are described in as much detail as others, this does not in any way reflect on the instruments - this imbalance simply reflects the difficulties in compiling the necessary information for each of the instruments in the time available. I hope that this appendix is an evolving project that will include not only updated, but also expanded information on each ofthe instruments in subsequent editions ofthis book. Laser Spot Scanning Confocal Microscopes These instruments are based on the use of a finely focussed laser "spot" that is scanned across the sampie. The retuming fluorescent or backscattered light is directed through a confocal iris or pinhole that eliminates out-of-focus light. BioRad Cell Science Division _________--'pO<:a..,g.."ec..::3=56 CarIZeiss___________________ p~a~gce~3~8~2 Leica Microsystems_____________ ---"p~a!.llg~e..:!:4=02 Nikon________________________________________ ~p~aAg~e~4~15 Olympus___________________ ~p~a~gce~4~2~O Nipkow Spinning Disk Confocal Microscopes The Nipkow disk contains a large number of fine "pinholes" arranged in a spiral array such that a confocal image is created when the disk is spinning. -
Etude Des Techniques De Super-Résolution Latérale En Nanoscopie Et Développement D’Un Système Interférométrique Nano-3D Audrey Leong-Hoï
Etude des techniques de super-résolution latérale en nanoscopie et développement d’un système interférométrique nano-3D Audrey Leong-Hoï To cite this version: Audrey Leong-Hoï. Etude des techniques de super-résolution latérale en nanoscopie et développement d’un système interférométrique nano-3D. Micro et nanotechnologies/Microélectronique. Université de Strasbourg, 2016. Français. NNT : 2016STRAD048. tel-02003485 HAL Id: tel-02003485 https://tel.archives-ouvertes.fr/tel-02003485 Submitted on 1 Feb 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. UNIVERSITÉ DE STRASBOURG ÉCOLE DOCTORALE MATHEMATIQUES, SCIENCES DE L'INFORMATION ET DE L'INGENIEUR (MSII) – ED 269 LABORATOIRE DES SCIENCES DE L'INGENIEUR, DE L'INFORMATIQUE ET DE L'IMAGERIE (ICUBE UMR 7357) THÈSE présentée par : Audrey LEONG-HOI soutenue le : 2 DÉCEMBRE 2016 pour obtenir le grade de : Docteur de l’université de Strasbourg Discipline / Spécialité : Electronique, microélectronique, photonique Étude des techniques de super-résolution latérale en nanoscopie et développement d'un système interférométrique nano-3D THÈSE dirigée par : Dr. MONTGOMERY Paul Directeur de recherche, CNRS, ICube (Strasbourg) Pr. SERIO Bruno Professeur des Universités, Université Paris Ouest, LEME (Paris) RAPPORTEURS : Dr. GORECKI Christophe Directeur de recherche, CNRS, FEMTO-ST (Besançon) Pr.