Cenozoic Megafossils of Northern Alaska
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Examining Patterns of Genetic Variation in Canadian Marine Molluscs Through DNA Barcodes
Examining patterns of genetic variation in Canadian marine molluscs through DNA barcodes by Kara Layton A Thesis presented to The University of Guelph In partial fulfilment of requirements for the degree of Master of Science in Integrative Biology Guelph, Ontario, Canada © Kara Layton, January, 2012 ABSTRACT Examining patterns of genetic variation in Canadian marine molluscs through DNA barcodes Kara Layton Advisor: University of Guelph, 2013 Professor P.D.N Hebert In this thesis I investigate patterns of sequence variation at the COI gene in Canadian marine molluscs. The research presented begins the construction of a DNA barcode reference library for this phylum, presenting records for nearly 25% of the Canadian fauna. This work confirms that the COI gene region is an effective tool for delineating species of marine molluscs and for revealing overlooked species. This study also discovered a link between GC content and sequence divergence between congeneric species. I also provide a detailed analysis of population structure in two bivalves with similar larval development and dispersal potential, exploring how Canada’s extensive glacial history has shaped genetic structure. Both bivalve species show evidence for cryptic taxa and particularly high genetic diversity in populations from the northeast Pacific. These results have implications for the utility of DNA barcoding both for documenting biodiversity and broadening our understanding of biogeographic patterns in Holarctic species. Acknowledgements Firstly, I would like to thank my advisor Dr. Paul Hebert for providing endless guidance and support during my program and for greatly improving my research. You always encouraged my participation in field collections and conferences, allowing many opportunities to connect with colleagues and present my research to the scientific community. -
Of Corncobs and Flat Artichokes (Pdf) [Neptunea]
Of Corncobs and Flat Artichokes by Ronald L. Shimek, Ph. D. Here in the Pacific Northwest many shell collectors tend to think that we have been short-changed with regard to large-shelled snails. A couple of larger snail species are relatively common, Ceratostoma foliatum (Gmelin, 1791) and Fusitriton oregonesis (Redfield, 1848) come to mind but, by and large, the sizes of most local shelled gastropods range from small to smaller. There is, however, one relatively diverse group that contains several species whose individuals may become relatively large. Even better, depending on the area where they are found, some individuals are spectacularly- colored with interesting sculpture. These animals are, of course, the larger species in the genus Neptunea. The mention of Neptunea in a recent issue of The Dredgings, prompted me to write this essay. For some time I’ve wanted to contribute a short article and I guess it just took the necessary stimulus. A B C Figure A. Neptunea pribiloffensis. Specimen is about 10 cm (4 inches) long. Collected from the eastern Bering Sea. Figure B. Neptunea lyrata. Specimen is about 12 cm (5 inches) long. Collected from the Strait of Juan de Fuca, south of San Juan Island, Washington. Figure C. Neptunea heros (Gray, 1850) is one of the more “flashy” northern Neptunea species. This specimen was about 19 cm (7 inches) long and, when living, the shell color was an intense magenta. Figure D. Neptunea pribiloffensis female depositing her egg-capsule mass. The snail is about 75 mm (3 inches) long. Note the flaccid, baby- sitting anemone in the lower left corner. -
INVERTEBRATE SPECIES in the EASTERN BERING SEA By
Effects of areas closed to bottom trawling on fish and invertebrate species in the eastern Bering Sea Item Type Thesis Authors Frazier, Christine Ann Download date 01/10/2021 18:30:05 Link to Item http://hdl.handle.net/11122/5018 e f f e c t s o f a r e a s c l o s e d t o b o t t o m t r a w l in g o n fish a n d INVERTEBRATE SPECIES IN THE EASTERN BERING SEA By Christine Ann Frazier RECOMMENDED: — . /Vj Advisory Committee Chair Program Head / \ \ APPROVED: M--- —— [)\ Dean, School of Fisheries and Ocean Sciences • ~7/ . <-/ / f a Dean of the Graduate Sch6oI EFFECTS OF AREAS CLOSED TO BOTTOM TRAWLING ON FISH AND INVERTEBRATE SPECIES IN THE EASTERN BERING SEA A THESIS Presented to the Faculty of the University of Alaska Fairbanks in Partial Fulfillment of the Requirements for the Degree of MASTER OF SCIENCE 6 By Christine Ann Frazier, B.A. Fairbanks, Alaska December 2003 UNIVERSITY OF ALASKA FAIRBANKS ABSTRACT The Bering Sea is a productive ecosystem with some of the most important fisheries in the United States. Constant commercial fishing for groundfish has occurred since the 1960s. The implementation of areas closed to bottom trawling to protect critical habitat for fish or crabs resulted in successful management of these fisheries. The efficacy of these closures on non-target species is unknown. This study determined if differences in abundance, biomass, diversity and evenness of dominant fish and invertebrate species occur among areas open and closed to bottom trawling in the eastern Bering Sea between 1996 and 2000. -
Distribution and Abundance of Some Epibenthic Invertebrates of the Northeastern Gulf of Alaska with Notes on the Feeding Biology of Selected Species
DISTRIBUTION AND ABUNDANCE OF SOME EPIBENTHIC INVERTEBRATES OF THE NORTHEASTERN GULF OF ALASKA WITH NOTES ON THE FEEDING BIOLOGY OF SELECTED SPECIES by Howard M. Feder and Stephen C. Jewett Institute of Marine Science University of Alaska Fairbanks, Alaska 99701 Final Report Outer Continental Shelf Environmental Assessment Program Research Unit 5 August 1978 357 We thank Max Hoberg, University of Alaska, and the research group from the Northwest Fisheries Center, Seattle, Washington, for assistance aboard the MV North Pucijk. We also thank Lael Ronholt, Northwest Fisheries Center, for data on commercially important invertebrates. Dr. D. P. Abbott, of the Hopkins Marine Station, Stanford University, identified the tunicate material. We appreciate the assistance of the Marine Sorting Center and Max Hoberg of the University of Alaska for taxonomic assistance. We also thank Rosemary Hobson, Data Processing, University of Alaska, for help with coding problems and ultimate resolution of those problems. This study was funded by the Bureau of Land Management, Department of the Interior, through an interagency agreement with the National Oceanic and Atmospheric Administration, Department of Commerce, as part of the Alaska Outer Continental Shelf Environmental Assessment Program. SUMMARY OF OBJEC!CIVES, CONCLUSIONS, AND IMPLICATIONS WITH RESPECT TO OCS OIL AND GAS DEVELOPMENT The objectives of this study were to obtain (1) a qualitative and quantitative inventory of dominant epibenthic species within the study area, (2) a description of spatial distribution patterns of selected benthic invertebrate species, and (3) preliminary observations of biological interrelationships between selected segments of the benthic biota. The trawl survey was effective, and excellent spatial coverage was obtained, One hundred and thirty-three stations were successfully occupied, yielding a mean epifaunal invertebrate biomass of 2.6 g/mz. -
Pliocene to Quaternary Sinistral Neptunea Species (Mollusca, Gastropoda, Buccinidae) from the NE Atlantic
Cainozoic Research, 14(1), pp. 17-34, July 2014 17 Pliocene to Quaternary sinistral Neptunea species (Mollusca, Gastropoda, Buccinidae) from the NE Atlantic Marcel Vervoenen1, Freddy van Nieulande2, Koen Fraussen3, Frank P. Wesselingh4, 6 & Ronald Pouwer5 1 Beekstraat 86A, B-9300 Aalst, Belgium 2 Scheldepoortstraat 56, NL-4339 BN Nieuw- en Sint Joosland, The Netherlands; [email protected] 3 Leuvensestraat 25, B-3200 Aarschot, Belgium; [email protected] 4 Naturalis Biodiversity Center, P.O. Box 9517, NL-2300 RA Leiden, The Netherlands; [email protected] 5 Naturalis Biodiversity Center, P.O. Box 9517, NL-2300 RA Leiden, The Netherlands; [email protected] 6 corresponding author. Received 29 April 2014, revised version accepted 23 May 2014 The taxonomy of sinistral Neptunea species from the Pliocene of the North Sea Basin and the Quaternary of NW Europe is investigated. All sinistral forms are considered to be part of a single clade. Morphological varieties from the Pliocene successions of the southern North Sea Basin are documented. A remarkable increase in the number of varieties occurs in a short stratigraphic interval in the latest Piacenzian (Lillo Formation, Kruisschans Member, Antwerp area, Belgium). The Pliocene morphs are for the moment grouped as forms within Neptunea angulata Harmer, 1914 (non N. angulata Wood, 1848). Several of the morphs appear to lack intermediate forms and thus the presence of sibling species may be demonstrated when more material will become available. During the Pleistocene, the sinistral species N. inversa Harmer, 1918, occurred in NW Europe. South of the North Sea Basin the last occurrence of the species is at least the Middle Pleistocene MIS 13. -
Proceedings of the United States National Museum
PROCEEDINGS OF THE UNITED STATES NATIONAL MUSEUM SMITHSONIAN INSTITUTION U. S. NATIONAL MUSEUM VoL 109 WMhington : 1959 No. 3412 MARINE MOLLUSCA OF POINT BARROW, ALASKA Bv Nettie MacGinitie Introduction The material upon which this study is based was collected by G. E. MacGinitie in the vicinity of Point Barrow, Alaska. His work on the invertebrates of the region (see G. E. MacGinitie, 1955j was spon- sored by contracts (N6-0NR 243-16) between the OfRce of Naval Research and the California Institute of Technology (1948) and The Johns Hopkins L^niversity (1949-1950). The writer, who served as research associate under this project, spent the. periods from July 10 to Oct. 10, 1948, and from June 1949 to August 1950 at the Arctic Research Laboratory, which is located at Point Barrow base at ap- proximately long. 156°41' W. and lat. 71°20' N. As the northernmost point in Alaska, and representing as it does a point about midway between the waters of northwest Greenland and the Kara Sea, where collections of polar fauna have been made. Point Barrow should be of particular interest to students of Arctic forms. Although the dredge hauls made during the collection of these speci- mens number in the hundreds and, compared with most "expedition standards," would be called fairly intensive, the area of the ocean ' Kerckhofl Marine Laboratory, California Institute of Technology. 473771—59 1 59 — 60 PROCEEDINGS OF THE NATIONAL MUSEUM vol. los bottom touched by the dredge is actually small in comparison with the total area involved in the investigation. Such dredge hauls can yield nothing comparable to what can be obtained from a mudflat at low tide, for instance. -
2018 Bibliography of Taxonomic Literature
Bibliography of taxonomic literature for marine and brackish water Fauna and Flora of the North East Atlantic. Compiled by: Tim Worsfold Reviewed by: David Hall, NMBAQCS Project Manager Edited by: Myles O'Reilly, Contract Manager, SEPA Contact: [email protected] APEM Ltd. Date of Issue: February 2018 Bibliography of taxonomic literature 2017/18 (Year 24) 1. Introduction 3 1.1 References for introduction 5 2. Identification literature for benthic invertebrates (by taxonomic group) 5 2.1 General 5 2.2 Protozoa 7 2.3 Porifera 7 2.4 Cnidaria 8 2.5 Entoprocta 13 2.6 Platyhelminthes 13 2.7 Gnathostomulida 16 2.8 Nemertea 16 2.9 Rotifera 17 2.10 Gastrotricha 18 2.11 Nematoda 18 2.12 Kinorhyncha 19 2.13 Loricifera 20 2.14 Echiura 20 2.15 Sipuncula 20 2.16 Priapulida 21 2.17 Annelida 22 2.18 Arthropoda 76 2.19 Tardigrada 117 2.20 Mollusca 118 2.21 Brachiopoda 141 2.22 Cycliophora 141 2.23 Phoronida 141 2.24 Bryozoa 141 2.25 Chaetognatha 144 2.26 Echinodermata 144 2.27 Hemichordata 146 2.28 Chordata 146 3. Identification literature for fish 148 4. Identification literature for marine zooplankton 151 4.1 General 151 4.2 Protozoa 152 NMBAQC Scheme – Bibliography of taxonomic literature 2 4.3 Cnidaria 153 4.4 Ctenophora 156 4.5 Nemertea 156 4.6 Rotifera 156 4.7 Annelida 157 4.8 Arthropoda 157 4.9 Mollusca 167 4.10 Phoronida 169 4.11 Bryozoa 169 4.12 Chaetognatha 169 4.13 Echinodermata 169 4.14 Hemichordata 169 4.15 Chordata 169 5. -
Phylogenetic Positions of Some Genera and Species of the Family Buccinidae (Gastropoda: Mollusca) from China Based on Ribosomal RNA and COI Sequences
CORE Metadata, citation and similar papers at core.ac.uk Provided by Springer - Publisher Connector Article SPECIAL TOPIC: Change of Biodiversity Patterns in Coastal Zone July 2013 Vol.58 No.19: 23152322 doi: 10.1007/s11434-013-5922-z Phylogenetic positions of some genera and species of the family Buccinidae (Gastropoda: Mollusca) from China based on ribosomal RNA and COI sequences HOU Lin1*, DAHMS Hans-Uwe2, DONG ChangYong1, CHEN YiFei1, HOU HaoChen1, YANG WanXi3 & ZOU XiangYang4 1 College of Life Science, Liaoning Normal University, Dalian 116081, China; 2 Sangmyung University, Green Life Science Department, 7 Hongji-dong, Jongno-gu, Seoul 110-743, Korea; 3 College of Life Sciences, Zhejiang University, Hangzhou 310058, China; 4 Department of Biotechnology, Dalian Medical University, Dalian 116044, China Received January 21, 2013; accepted March 27, 2013 A phylogenetic analysis of members of the family Buccinidae was conducted using 18S rRNA gene, 28S rRNA gene and the mi- tochondrial cytochrome oxidase I gene. We studied 18 species of Buccinidae that belong to eight different genera and inhabit the China coastal seas. We analyzed the patterns of divergence between an outgroup and basal ingroup taxa, the monophyly of the genus Neptunea, and the position of one unnamed species within the Buccinidae. A phylogenetic tree (neighbor-joining (NJ) method) was reconstructed based on the sequences of 18S rRNA, 28S rRNA and COI, with Rapana venosa as outgroup. The NJ tree indicated that the 18 species could be divided into five groups. The genus Buccinum was monophyletic, whereas Neptunea was shown to be paraphyletic since it included Siphonalia subdilatata and Neptunea sp., a new species. -
Deep-Water Buccinidae (Gastropoda: Neogastropoda) from Sunken Wood, Vents and Seeps: Molecular Phylogeny and Taxonomy Yu.I
Deep-water Buccinidae (Gastropoda: Neogastropoda) from sunken wood, vents and seeps: molecular phylogeny and taxonomy Yu.I. Kantor, N. Puillandre, K. Fraussen, A.E. Fedosov, P. Bouchet To cite this version: Yu.I. Kantor, N. Puillandre, K. Fraussen, A.E. Fedosov, P. Bouchet. Deep-water Buccinidae (Gas- tropoda: Neogastropoda) from sunken wood, vents and seeps: molecular phylogeny and taxonomy. Journal of the Marine Biological Association of the UK, Cambridge University Press (CUP), 2013, 93 (8), pp.2177-2195. 10.1017/S0025315413000672. hal-02458197 HAL Id: hal-02458197 https://hal.archives-ouvertes.fr/hal-02458197 Submitted on 28 Jan 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Deep-water Buccinidae (Gastropoda: Neogastropoda) from sunken wood, vents and seeps: Molecular phylogeny and taxonomy KANTOR YU.I.1, PUILLANDRE N.2, FRAUSSEN K.3, FEDOSOV A.E.1, BOUCHET P.2 1 A.N. Severtzov Institute of Ecology and Evolution of Russian Academy of Sciences, Leninski Prosp. 33, Moscow 119071, Russia, 2 Muséum National d’Histoire Naturelle, Departement Systematique et Evolution, UMR 7138, 43, Rue Cuvier, 75231 Paris, France, 3 Leuvensestraat 25, B–3200 Aarschot, Belgium ABSTRACT Buccinidae - like other canivorous and predatory molluscs - are generally considered to be occasional visitors or rare colonizers in deep-sea biogenic habitats. -
Guide to the Systematic Distribution of Mollusca in the British Museum
PRESENTED ^l)c trustee*. THE BRITISH MUSEUM. California Swcademu 01 \scienceb RECEIVED BY GIFT FROM -fitoZa£du^4S*&22& fo<?as7u> #yjy GUIDE TO THK SYSTEMATIC DISTRIBUTION OK MOLLUSCA IN III K BRITISH MUSEUM PART I HY JOHN EDWARD GRAY, PHD., F.R.S., P.L.S., P.Z.S. Ac. LONDON: PRINTED BY ORDER OF THE TRUSTEES 1857. PRINTED BY TAYLOR AND FRANCIS, RED LION COURT, FLEET STREET. PREFACE The object of the present Work is to explain the manner in which the Collection of Mollusca and their shells is arranged in the British Museum, and especially to give a short account of the chief characters, derived from the animals, by which they are dis- tributed, and which it is impossible to exhibit in the Collection. The figures referred to after the names of the species, under the genera, are those given in " The Figures of Molluscous Animals, for the Use of Students, by Maria Emma Gray, 3 vols. 8vo, 1850 to 1854 ;" or when the species has been figured since the appear- ance of that work, in the original authority quoted. The concluding Part is in hand, and it is hoped will shortly appear. JOHN EDWARD GRAY. Dec. 10, 1856. ERRATA AND CORRIGENDA. Page 43. Verenad.e.—This family is to be erased, as the animal is like Tricho- tropis. I was misled by the incorrectness of the description and figure. Page 63. Tylodinad^e.— This family is to be removed to PleurobrancMata at page 203 ; a specimen of the animal and shell having since come into my possession. -
Effects of Commer Effects of Commercial Otter Cial Otter Cial
American Fisheries Society Symposium 41:439–460, 2005 © 2005 by the American Fisheries Society Effects of Commercial Otter Trawling on Benthic Communities in the Southeastern Bering Sea ELOISE J. BROWN,1 BRUCE FINNEY, AND SUE HILLS Institute of Marine Science, University of Alaska Fairbanks, 245 O’Neill Building, Post Office Box 757220, Fairbanks, Alaska 99775, USA MICHAELA DOMMISSE Monash University, Department of Geography and Environmental Science, Post Office Box 11A, Clayton 3168, Australia Abstract. The effects of commercial bottom trawling for yellowfin sole Limanda aspera on benthic communities were investigated in a sandy habitat exposed to high wave and tidal disturbance at 20–30 m depth in the southeastern Bering Sea. We compared an area that has been closed to commercial trawling for 10 years with an adjacent area that is now open to commercial trawling. In addition, we examined the immediate effects of experimental trawling on benthic community structure in the area closed to trawling. The fished area was characterized by reduced macrofauna density, biomass, and richness relative to the closed (unfished) area, but diversity was not different. Interannual variability of macrofauna assemblages was high in the system, yet assemblages in the two areas were distinguished using multivariate analyses and dominant taxa. After 10 years, sessile taxa (e.g., Maldanidae polychaetes) were prevalent in the closed area, and mobile scavengers (e.g., Lysianassidae amphipods) were more common in the fished area. Immediate responses of macrofauna to experimental trawling were subtle (i.e., reduced richness, absence of rare taxa, and patchy changes in assemblage biomass), but no differences were detected relative to controls for density, diversity, or total biomass. -
An Annotated Checklist of the Marine Macroinvertebrates of Alaska David T
NOAA Professional Paper NMFS 19 An annotated checklist of the marine macroinvertebrates of Alaska David T. Drumm • Katherine P. Maslenikov Robert Van Syoc • James W. Orr • Robert R. Lauth Duane E. Stevenson • Theodore W. Pietsch November 2016 U.S. Department of Commerce NOAA Professional Penny Pritzker Secretary of Commerce National Oceanic Papers NMFS and Atmospheric Administration Kathryn D. Sullivan Scientific Editor* Administrator Richard Langton National Marine National Marine Fisheries Service Fisheries Service Northeast Fisheries Science Center Maine Field Station Eileen Sobeck 17 Godfrey Drive, Suite 1 Assistant Administrator Orono, Maine 04473 for Fisheries Associate Editor Kathryn Dennis National Marine Fisheries Service Office of Science and Technology Economics and Social Analysis Division 1845 Wasp Blvd., Bldg. 178 Honolulu, Hawaii 96818 Managing Editor Shelley Arenas National Marine Fisheries Service Scientific Publications Office 7600 Sand Point Way NE Seattle, Washington 98115 Editorial Committee Ann C. Matarese National Marine Fisheries Service James W. Orr National Marine Fisheries Service The NOAA Professional Paper NMFS (ISSN 1931-4590) series is pub- lished by the Scientific Publications Of- *Bruce Mundy (PIFSC) was Scientific Editor during the fice, National Marine Fisheries Service, scientific editing and preparation of this report. NOAA, 7600 Sand Point Way NE, Seattle, WA 98115. The Secretary of Commerce has The NOAA Professional Paper NMFS series carries peer-reviewed, lengthy original determined that the publication of research reports, taxonomic keys, species synopses, flora and fauna studies, and data- this series is necessary in the transac- intensive reports on investigations in fishery science, engineering, and economics. tion of the public business required by law of this Department.