The Distinct Roles of Two Intertidal Foraminiferal Species in Phytodetrital Carbon and Nitrogen fluxes – Results from Laboratory Feeding Experiments
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The Planktonic Protist Interactome: Where Do We Stand After a Century of Research?
bioRxiv preprint doi: https://doi.org/10.1101/587352; this version posted May 2, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Bjorbækmo et al., 23.03.2019 – preprint copy - BioRxiv The planktonic protist interactome: where do we stand after a century of research? Marit F. Markussen Bjorbækmo1*, Andreas Evenstad1* and Line Lieblein Røsæg1*, Anders K. Krabberød1**, and Ramiro Logares2,1** 1 University of Oslo, Department of Biosciences, Section for Genetics and Evolutionary Biology (Evogene), Blindernv. 31, N- 0316 Oslo, Norway 2 Institut de Ciències del Mar (CSIC), Passeig Marítim de la Barceloneta, 37-49, ES-08003, Barcelona, Catalonia, Spain * The three authors contributed equally ** Corresponding authors: Ramiro Logares: Institute of Marine Sciences (ICM-CSIC), Passeig Marítim de la Barceloneta 37-49, 08003, Barcelona, Catalonia, Spain. Phone: 34-93-2309500; Fax: 34-93-2309555. [email protected] Anders K. Krabberød: University of Oslo, Department of Biosciences, Section for Genetics and Evolutionary Biology (Evogene), Blindernv. 31, N-0316 Oslo, Norway. Phone +47 22845986, Fax: +47 22854726. [email protected] Abstract Microbial interactions are crucial for Earth ecosystem function, yet our knowledge about them is limited and has so far mainly existed as scattered records. Here, we have surveyed the literature involving planktonic protist interactions and gathered the information in a manually curated Protist Interaction DAtabase (PIDA). In total, we have registered ~2,500 ecological interactions from ~500 publications, spanning the last 150 years. -
33. Cretaceous and Paleogene Planktonic Foraminifera, Leg 27 of the Deep Sea Drilling Project V
33. CRETACEOUS AND PALEOGENE PLANKTONIC FORAMINIFERA, LEG 27 OF THE DEEP SEA DRILLING PROJECT V. A. Krasheninnikov, Geological Institute of the Academy of Sciences, Moscow, USSR ABSTRACT Cretaceous and Cenozoic sediments, penetrated by Sites 259, 260, 261, and 263 in the eastern part of the Indian Ocean, are mainly brown zeolite clays and turbidites. Small quantities of calcareous clays and nanno ooze with planktonic foraminifera are intercalated with the clays and have Albian, upper Paleocene, and lower Eocene ages. The Albian sediments at Site 259 are characterized only by Hedbergella species (infracretacea, globigerinellinoides, planispira, amabilis, aff. delrioensis, aff. infracretacea). At Site 260 planktonic foraminifera are more diverse; in addition to the above-mentioned species there are other species of Hedbergella (trocoidea brittonensis) and representatives of Globigerinelloides (eaglefordensis, bentonensis, ultramicra, gyroidinaeformis, aff. maridalensis). Assemblages of planktonic foraminifera of the upper Paleocene (the Globorotalia velascoensis Zone) at Site 259 consist of comparatively rare species of Acarinina (acarinata, mckannai, primitival and Glpbigerina (chascanona, nana) combined with sporadic Globorotalia (imitata, aff. acuta). Sediments of the lower part of the lower Eocene at Site 259 are characterized by rare Acarinina (pseudotopilensis, soldadoensis, acarinata, aff. triplex) and casts of Globorotalia from the group of Globorotalia aequa— G. subbotinae—G. marginodentata. Turbidites contain rather frequently redeposited Cretaceous, Paleogene, and Neogene planktonic foraminifera. LOWER CRETACEOUS (ALBIAN) Lower Cretaceous sediments, Albian, with planktonic _____^^ ""W••l•i i•i•r;•i•: foraminifera have been identified in two regions of the Indian Ocean—the Perth Abyssal Plain in the south (Site 259) and the Gascoyne Abyssal Plain in the north (Site 260). -
Recent Benthic Foraminifera from the Itaipu Lagoon, Rio De Janeiro (Southeastern Brazil)
12 5 1959 the journal of biodiversity data 15 September 2016 Check List LISTS OF SPECIES Check List 12(5): 1959, 15 September 2016 doi: http://dx.doi.org/10.15560/12.5.1959 ISSN 1809-127X © 2016 Check List and Authors Recent benthic foraminifera from the Itaipu Lagoon, Rio de Janeiro (southeastern Brazil) Débora Raposo1*, Vanessa Laut2, Iara Clemente3, Virginia Martins3, Fabrizio Frontalini4, Frederico Silva5, Maria Lúcia Lorini6, Rafael Fortes6 and Lazaro Laut1 1 Laboratório de Micropaleontologia (LabMicro), Universidade Federal do Estado do Rio de Janeiro – UNIRIO. Avenida Pasteur 458, Urca, Rio de Janeiro, CEP 22290-240, RJ, Brazil 2 Universidade Federal Fluminense (UFF), Instituto de Biologia Marinha, Outeiro São João Batista, s/nº, Niterói, Rio de Janeiro, CEP 24001-970, RJ, Brazil 3 Universidade do Estado do Rio de Janeiro (UERJ). Rua São Francisco Xavier, 524, Maracanã, Rio de Janeiro, CEP 20550-900, RJ, Brazil 4 DiSTeVA, Università degli Studi di Urbino “Carlo Bo”, Campus Scientifico Enrico Mattei. Località Crocicchia, 61029 Urbino, Italy 5 Laboratório de Palinofácies e Fácies Orgânicas (LAFO), Universidade Federal do Rio de Janeiro (UFRJ). Avenida Pedro Calmon, 550, Cidade Universitária, Rio de Janeiro, CEP 21941-901, RJ, Brazil 6 Laboratório de Ecologia Bêntica, Universidade Federal do Estado do Rio de Janeiro – UNIRIO. Avenida Pasteur 458, Urca, Rio de Janeiro, CEP 22290-240, RJ, Brazil * Corresponding author. E-mail: [email protected] Abstract: Itaipu Lagoon is located near the mouth of There are many advantages of applying foraminifera Guanabara Bay and has great importance for recreation to environmental monitoring when compared with to the city of Niterói, Rio de Janeiro state, Brazil. -
New Insights Into the Behavioural Ecology of Intertidal Foraminifera
Journal of Foraminiferal Research, v. 45, no. 4, p. 390–401, October 2015 THE DEVIL LIES IN DETAILS: NEW INSIGHTS INTO THE BEHAVIOURAL ECOLOGY OF INTERTIDAL FORAMINIFERA LAURENT SEURONT1,3 AND VINCENT M. P. BOUCHET2 ABSTRACT To validate in-situ observations, living foraminifera have The motion behaviour of three species of intertidal been used in the laboratory for nearly a century (e.g., Myers, foraminifera, Ammonia tepida, Cribroelphidium excavatum 1935; Le Calvez, 1938; Jepps, 1942; Arnold, 1953). In contrast, and Haynesina germanica, was investigated continuously in the the understanding of the behavioural ecology of foraminifera laboratory. We first infer the presence of geotactic and is still in its infancy, despite a fair amount of work related to phototactic responses. Significant geotactic responses were their vertical and horizontal rates of movement (Arnold, 1953, observed for all three species; A. tepida was found to be 1974; Zmiri et al., 1974; Severin & Erskian, 1981; Severin negatively geotactic while C. excavatum and H. germanica et al., 1982; Severin, 1987; Kitazato, 1988; Wetmore, 1988; showed positive geotaxis. In contrast, no response to light was Weinberg, 1991; Anderson et al., 1991; Bornmalm et al., 1997; ever observed. The detailed nature of motility, investigated in Manley & Shaw, 1997; Bernhard, 2000; Gross, 2000; Khare & terms of both geometric and stochastic complexity of their Nigam, 2000). motion behaviour, was consistently characterised by a strong Negative geotaxis is by far the most widely reported inter-specific, inter-individual and intra-individual variability. behavioural property among foraminifera (Murray, 1963, Specifically, A. tepida and H. germanica were characterised by 1979, 1991; Richter, 1964; Lee et al., 1969; Moodley, 1990), an intensive search behaviour (they explore their environment which has been routinely used to separate them from the slowly with straighter trajectories), while C. -
Protozoa and Oxygen
Acta Protozool. (2014) 53: 3–12 http://www.eko.uj.edu.pl/ap ActA doi:10.4467/16890027AP.13.0020.1117 Protozoologica Special issue: Marine Heterotrophic Protists Guest editors: John R. Dolan and David J. S. Montagnes Review paper Protozoa and Oxygen Tom FENCHEL Marine Biological Laboratory, University of Copenhagen, Denmark Abstract. Aerobic protozoa can maintain fully aerobic metabolic rates even at very low O2-tensions; this is related to their small sizes. Many – or perhaps all – protozoa show particular preferences for a given range of O2-tensions. The reasons for this and the role for their distribution in nature are discussed and examples of protozoan biota in O2-gradients in aquatic systems are presented. Facultative anaerobes capable of both aerobic and anaerobic growth are probably common within several protozoan taxa. It is concluded that further progress in this area is contingent on physiological studies of phenotypes. Key words: Protozoa, chemosensory behavior, oxygen, oxygen toxicity, microaerobic protozoa, facultative anaerobes, microaerobic and anaerobic habitats. INTRODUCTION low molecular weight organics and in some cases H2 as metabolic end products. Some ciliates and foraminifera use nitrate as a terminal electron acceptor in a respira- Increasing evidence suggests that the last common tory process (for a review on anaerobic protozoa, see ancestor of extant eukaryotes was mitochondriate and Fenchel 2011). had an aerobic energy metabolism. While representa- The great majority of protozoan species, however, tives of different protist taxa have secondarily adapted depend on aerobic energy metabolism. Among pro- to an anaerobic life style, all known protists possess ei- tists with an aerobic metabolism many – or perhaps ther mitochondria capable of oxidative phosphorylation all – show preferences for particular levels of oxygen or – in anaerobic species – have modified mitochon- tension below atmospheric saturation. -
The Metabolic Response of Ubiquitous Benthic Foraminifera (Ammonia Tepida)
RESEARCH ARTICLE Surviving anoxia in marine sediments: The metabolic response of ubiquitous benthic foraminifera (Ammonia tepida) Charlotte LeKieffre1*, Jorge E. Spangenberg2, Guillaume Mabilleau3, SteÂphane Escrig1, Anders Meibom1,4*, Emmanuelle Geslin5* 1 Laboratory for Biological Geochemistry, School of Architecture, Civil and Environmental Engineering (ENAC), Ecole Polytechnique FeÂdeÂrale de Lausanne (EPFL), Lausanne, Switzerland, 2 Stable Isotope and Organic Geochemistry Laboratories, Institute of Earth Surface Dynamics (IDYST), University of Lausanne, a1111111111 Lausanne, Switzerland, 3 Service commun d'imageries et d'analyses microscopiques (SCIAM), Institut de a1111111111 Biologie en SanteÂ, University of Angers, Angers, France, 4 Center for Advanced Surface Analysis, Institute of a1111111111 Earth Sciences, University of Lausanne, Lausanne, Switzerland, 5 UMR CNRS 6112 - LPG-BIAF, University a1111111111 of Angers, Angers, France a1111111111 * [email protected] (CL); [email protected] (AM); [email protected] (EG) Abstract OPEN ACCESS High input of organic carbon and/or slowly renewing bottom waters frequently create periods Citation: LeKieffre C, Spangenberg JE, Mabilleau G, Escrig S, Meibom A, Geslin E (2017) Surviving with low dissolved oxygen concentrations on continental shelves and in coastal areas; such anoxia in marine sediments: The metabolic events can have strong impacts on benthic ecosystems. Among the meiofauna living in these response of ubiquitous benthic foraminifera environments, benthic foraminifera are often the most tolerant to low oxygen levels. Indeed, (Ammonia tepida). PLoS ONE 12(5): e0177604. https://doi.org/10.1371/journal.pone.0177604 some species are able to survive complete anoxia for weeks to months. One known mecha- nism for this, observed in several species, is denitrification. For other species, a state of Editor: Bo Thamdrup, University of Southern Denmark, DENMARK highly reduced metabolism, essentially a state of dormancy, has been proposed but never demonstrated. -
The Foraminifera.Eu Database: Concept and Status
Palaeontologia Electronica palaeo-electronica.org The foraminifera.eu database: concept and status Michael Hesemann ABSTRACT The foraminifera.eu project with its 120 avocational and professional scientific contributors has built a popular online image database containing information about fossil and recent foraminifera. Foraminiferal data available from over 200 years of sci- entific studies and publications were first analyzed in order to create a robust database using structurable and available data-attributes. A freely accessible database with online interfaces was established to improve the accessibility of foraminiferal data. So far, the database contains 9,800+ records of specimens with images and accompany- ing metadata. Thirty data attributes were chosen, and discrete values were defined and applied to each dataset covering the areas of identification, geographical and strati- graphical positioning, morphology, synonyms, references, and collection related data. The attributes were chosen based on their usefulness to both avocational and profes- sional scientists and on their general availability. A discussion and review process has been established to enlarge the database by adding more records and to implement new data attributes and interfaces. In 2015, the database was accessed on average by 220 users daily (excluding bots) and 0,8 gigabytes of data were downloaded each day. The numbers indicate the utility and relevance of the foraminifera.eu database, and this is also acknowledged by senior scientists and major institutions through their con- tributions. Michael Hesemann. Foraminifera.eu Project, Waterloostrasse 24, 22769 Hamburg, Germany. [email protected] INTRODUCTION Messina, 1940-2014; Kennett and Srinivasan, 1983; Loeblich and Tappan, 1988). The basic idea Over 200 years of scientific studies and thou- of the foraminifera.eu database (FEUDAT) is to sands of publications have resulted in a huge improve the accessibility of foraminiferal data. -
The Marine Protist Foraminifera
International Journal of Paleobiology & Paleontology ISSN: 2642-1283 MEDWIN PUBLISHERS Committed to Create Value for researchers The Marine Protist Foraminifera Ishita D* Editorial Department of Geology, University of Calcutta, Kolkata, India Volume 3 Issue 1 Received Date: March 21, 2020 *Corresponding author: Ishita Das, Department of Geology, University of Calcutta, Kolkata, Published Date: June 02, 2020 India, Email: [email protected] The marine protist foraminifera have become a very of a revolution in the investigation of trace elements in important tool in palaeoenvironmental analysis. Foraminifera Foraminifera, and knowledge in this area is increasing rapidly. are organisms belonging to a class of amoeboid protists Culturing of live individuals has also played an important role that are characterized by streaming granular ectoplasm in this proxy development, because the potential usefulness for catching prey and they are commonly protected by an external shell. The external shell can be made up of varied Oceanographers broadly group elemental behaviour in the material although the most common material is calcium oceanof trace according elements to can the be biogeochemical verified directly cycling by experimentation. of the elements carbonate. Some species have an agglutinated test where in the ocean: [1] ‘nutrient’ proxies such as Cd, Ba and Zn the organism constructs its test or shell from the sediment which provide information on seawater nutrient, carbon and particles surrounding it. Foraminifera usually have two types carbonate levels. They show large and systematic variations of life habits – benthic or planktic. The benthic foraminifera in their seawater chemistry due to their involvement in may adapt to live on sediment-water interface (epifaunal) biological cycling; [2] ‘physical’ proxies such as Mg, Sr, F and or in the sediment at various depths (infaunal). -
A Guide to 1.000 Foraminifera from Southwestern Pacific New Caledonia
Jean-Pierre Debenay A Guide to 1,000 Foraminifera from Southwestern Pacific New Caledonia PUBLICATIONS SCIENTIFIQUES DU MUSÉUM Debenay-1 7/01/13 12:12 Page 1 A Guide to 1,000 Foraminifera from Southwestern Pacific: New Caledonia Debenay-1 7/01/13 12:12 Page 2 Debenay-1 7/01/13 12:12 Page 3 A Guide to 1,000 Foraminifera from Southwestern Pacific: New Caledonia Jean-Pierre Debenay IRD Éditions Institut de recherche pour le développement Marseille Publications Scientifiques du Muséum Muséum national d’Histoire naturelle Paris 2012 Debenay-1 11/01/13 18:14 Page 4 Photos de couverture / Cover photographs p. 1 – © J.-P. Debenay : les foraminifères : une biodiversité aux formes spectaculaires / Foraminifera: a high biodiversity with a spectacular variety of forms p. 4 – © IRD/P. Laboute : îlôt Gi en Nouvelle-Calédonie / Island Gi in New Caledonia Sauf mention particulière, les photos de cet ouvrage sont de l'auteur / Except particular mention, the photos of this book are of the author Préparation éditoriale / Copy-editing Yolande Cavallazzi Maquette intérieure et mise en page / Design and page layout Aline Lugand – Gris Souris Maquette de couverture / Cover design Michelle Saint-Léger Coordination, fabrication / Production coordination Catherine Plasse La loi du 1er juillet 1992 (code de la propriété intellectuelle, première partie) n'autorisant, aux termes des alinéas 2 et 3 de l'article L. 122-5, d'une part, que les « copies ou reproductions strictement réservées à l'usage privé du copiste et non destinées à une utilisation collective » et, d'autre part, que les analyses et les courtes citations dans un but d'exemple et d'illustration, « toute représentation ou reproduction intégrale ou partielle, faite sans le consentement de l'auteur ou de ses ayants droit ou ayants cause, est illicite » (alinéa 1er de l'article L. -
23.3 Groups of Protists
Chapter 23 | Protists 639 cysts that are a protective, resting stage. Depending on habitat of the species, the cysts may be particularly resistant to temperature extremes, desiccation, or low pH. This strategy allows certain protists to “wait out” stressors until their environment becomes more favorable for survival or until they are carried (such as by wind, water, or transport on a larger organism) to a different environment, because cysts exhibit virtually no cellular metabolism. Protist life cycles range from simple to extremely elaborate. Certain parasitic protists have complicated life cycles and must infect different host species at different developmental stages to complete their life cycle. Some protists are unicellular in the haploid form and multicellular in the diploid form, a strategy employed by animals. Other protists have multicellular stages in both haploid and diploid forms, a strategy called alternation of generations, analogous to that used by plants. Habitats Nearly all protists exist in some type of aquatic environment, including freshwater and marine environments, damp soil, and even snow. Several protist species are parasites that infect animals or plants. A few protist species live on dead organisms or their wastes, and contribute to their decay. 23.3 | Groups of Protists By the end of this section, you will be able to do the following: • Describe representative protist organisms from each of the six presently recognized supergroups of eukaryotes • Identify the evolutionary relationships of plants, animals, and fungi within the six presently recognized supergroups of eukaryotes • Identify defining features of protists in each of the six supergroups of eukaryotes. In the span of several decades, the Kingdom Protista has been disassembled because sequence analyses have revealed new genetic (and therefore evolutionary) relationships among these eukaryotes. -
Phylogenomics Supports the Monophyly of the Cercozoa T ⁎ Nicholas A.T
Molecular Phylogenetics and Evolution 130 (2019) 416–423 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Phylogenomics supports the monophyly of the Cercozoa T ⁎ Nicholas A.T. Irwina, , Denis V. Tikhonenkova,b, Elisabeth Hehenbergera,1, Alexander P. Mylnikovb, Fabien Burkia,2, Patrick J. Keelinga a Department of Botany, University of British Columbia, Vancouver V6T 1Z4, British Columbia, Canada b Institute for Biology of Inland Waters, Russian Academy of Sciences, Borok 152742, Russia ARTICLE INFO ABSTRACT Keywords: The phylum Cercozoa consists of a diverse assemblage of amoeboid and flagellated protists that forms a major Cercozoa component of the supergroup, Rhizaria. However, despite its size and ubiquity, the phylogeny of the Cercozoa Rhizaria remains unclear as morphological variability between cercozoan species and ambiguity in molecular analyses, Phylogeny including phylogenomic approaches, have produced ambiguous results and raised doubts about the monophyly Phylogenomics of the group. Here we sought to resolve these ambiguities using a 161-gene phylogenetic dataset with data from Single-cell transcriptomics newly available genomes and deeply sequenced transcriptomes, including three new transcriptomes from Aurigamonas solis, Abollifer prolabens, and a novel species, Lapot gusevi n. gen. n. sp. Our phylogenomic analysis strongly supported a monophyletic Cercozoa, and approximately-unbiased tests rejected the paraphyletic topologies observed in previous studies. The transcriptome of L. gusevi represents the first transcriptomic data from the large and recently characterized Aquavolonidae-Treumulida-'Novel Clade 12′ group, and phyloge- nomics supported its position as sister to the cercozoan subphylum, Endomyxa. These results provide insights into the phylogeny of the Cercozoa and the Rhizaria as a whole. -
Anaerobic Metabolism of Foraminifera Thriving Below the Seafloor 2 3 Authors: William D
bioRxiv preprint doi: https://doi.org/10.1101/2020.03.26.009324; this version posted March 27, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Anaerobic metabolism of Foraminifera thriving below the seafloor 2 3 Authors: William D. Orsi1,2*, Raphaël Morard4, Aurele Vuillemin1, Michael Eitel1, Gert Wörheide1,2,3, 4 Jana Milucka5, Michal Kucera4 5 Affiliations: 6 1. Department of Earth and Environmental Sciences, Paleontology & Geobiology, Ludwig-Maximilians- 7 Universität München, 80333 Munich, Germany. 8 2. GeoBio-CenterLMU, Ludwig-Maximilians-Universität München, 80333 Munich, Germany 9 3. SNSB - Bayerische Staatssammlung für Paläontologie und Geologie, 80333 Munich, Germany 10 4. MARUM – Center for Marine Environmental Sciences, University of Bremen, Germany 11 5. Department of Biogeochemistry, Max Planck Institute for Marine Microbiology, Bremen, Germany 12 13 *To whom correspondence should be addressed: [email protected] 14 15 Abstract: Foraminifera are single-celled eukaryotes (protists) of large ecological importance, as well as 16 environmental and paleoenvironmental indicators and biostratigraphic tools. In addition, they are capable 17 of surviving in anoxic marine environments where they represent a major component of the benthic 18 community. However, the cellular adaptations of Foraminifera to the anoxic environment remain poorly 19 constrained. We sampled an oxic-anoxic transition zone in marine sediments from the Namibian shelf, 20 where the genera Bolivina and Stainforthia dominated the Foraminifera community, and use 21 metatranscriptomics to characterize Foraminifera metabolism across the different geochemical 22 conditions.