Biosynthesis and Processing of Prostatic and Lysosomal Acid Phosphatases in a Prostate Carcinoma Cell Line PC-3SF121
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Serum Level of Cathepsin B and Its Density in Men with Prostate Cancer As Novel Markers of Disease Progression
ANTICANCER RESEARCH 24: 2573-2578 (2004) Serum Level of Cathepsin B and its Density in Men with Prostate Cancer as Novel Markers of Disease Progression HIDEAKI MIYAKE1, ISAO HARA2 and HIROSHI ETO1 1Department of Urology, Hyogo Medical Center for Adults, 13-70 Kitaohji-cho, Akashi; 2Department of Urology, Kobe University School of Medicine, 7-5-1 Kusunoki-cho, Kobe, Japan Abstract. Background: Cathepsin B has been shown to play in men in Western industrialized countries and is the second an important role in invasion and metastasis of prostate leading cause of cancer-related death (1). Recent cancer. The objective of this study was to determine whether progression in the fields of diagnosis and follow-up using serum levels of cathepsin B and its density (cathepsin B-D) prostate-specific antigen (PSA) and its associated could be used as predictors of disease extension as well as parameters have contributed to early detection and accurate prognosis in patients with prostate cancer. Materials and prediction of prognosis (2, 3). However, despite these Methods: Serum levels of cathepsin B in 60 healthy controls, advances, more than 50% of patients still show evidence of 80 patients with benign prostatic hypertrophy (BPH) and 120 advanced disease at the time of diagnosis, and the currently patients with prostate cancer were measured by a sandwich available parameters are not correlated with the clinical enzyme immunoassay. Cathepsin B-D was calculated by course in some patients during progression to hormone- dividing the serum levels of cathepsin B by the prostate refractory disease (4); hence, there is a pressing need to volume, which was measured using transrectal ultra- develop a novel diagnostic and monitoring marker system sonography. -
And Peptide Sequences (>95 % Confidence) in the Non-Raft Fraction
Supplementary Table 1: Protein identities, their probability scores (protein score and expect score) and peptide sequences (>95 % confidence) in the non-raft fraction. Protein name Protein score Expect score Peptide sequences Glial fibrillary acidic protein 97 0.000058 LALDIEIATYR 0.0000026 LALDIEIATYR Phosphatidylinositol 3-kinase 25 0.038 HGDDLR Uveal autoantigen with coiled-coil domains and ankyrin repeats protein 30 0.03 TEELNR ADAM metallopeptidase domain 32 347 0.0072 SGSICDK 0.0059 YTFCPWR 0.00028 CSEVGPYINR 0.0073 DSASVIYAFVR 0.00044 DSASVIYAFVR 0.00047 LICTYPLQTPFLR 0.0039 LICTYPLQTPFLR 0.001 LICTYPLQTPFLR 0.0000038 AYCFDGGCQDIDAR 0.00000043 AYCFDGGCQDIDAR 0.0000042 VNQCSAQCGGNGVCTSR 0.0000048 NAPFACYEEIQSQTDR 0.000019 NAPFACYEEIQSQTDR Alpha-fetoprotein 24 0.0093 YIYEIAR Junction plakoglobin 214 0.011 ATIGLIR 0.0038 LVQLLVK 0.000043 EGLLAIFK 0.00027 QEGLESVLK 0.000085 TMQNTSDLDTAR 0.000046 ALMGSPQLVAAVVR 0.01 LLNQPNQWPLVK 0.01 NEGTATYAAAVLFR 0.004 NLALCPANHAPLQEAAVIPR 0.0007 VLSVCPSNKPAIVEAGGMQALGK 0.00086 ILVNQLSVDDVNVLTCATGTLSNLTCNNSK Catenin beta-1 54 0.000043 EGLLAIFK Lysozyme 89 0.0026 STDYGIFQINSR 0.00051 STDYGIFQINSR 1 0.0000052 STDYGIFQINSR Annexin A2 72 0.0036 QDIAFAYQR 72 0.0000043 TNQELQEINR Actin, cytoplasmic 61 0.023 IIAPPER 0.021 IIAPPER 0.0044 AGFAGDDAPR 0.013 EITALAPSTMK 0.0013 LCYVALDFEQEMATAASSSSLEK 0.023 IIAPPER 0.021 IIAPPER 0.0044 AGFAGDDAPR 0.0013 LCYVALDFEQEMATAASSSSLEK 0.023 IIAPPER 0.021 IIAPPER 0.0044 AGFAGDDAPR 0.013 EITALAPSTMK ACTA2 protein 35 0.0044 AGFAGDDAPR 0.013 EITALAPSTMK Similar to beta actin -
Sphingolipid Metabolism Diseases ⁎ Thomas Kolter, Konrad Sandhoff
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Biochimica et Biophysica Acta 1758 (2006) 2057–2079 www.elsevier.com/locate/bbamem Review Sphingolipid metabolism diseases ⁎ Thomas Kolter, Konrad Sandhoff Kekulé-Institut für Organische Chemie und Biochemie der Universität, Gerhard-Domagk-Str. 1, D-53121 Bonn, Germany Received 23 December 2005; received in revised form 26 April 2006; accepted 23 May 2006 Available online 14 June 2006 Abstract Human diseases caused by alterations in the metabolism of sphingolipids or glycosphingolipids are mainly disorders of the degradation of these compounds. The sphingolipidoses are a group of monogenic inherited diseases caused by defects in the system of lysosomal sphingolipid degradation, with subsequent accumulation of non-degradable storage material in one or more organs. Most sphingolipidoses are associated with high mortality. Both, the ratio of substrate influx into the lysosomes and the reduced degradative capacity can be addressed by therapeutic approaches. In addition to symptomatic treatments, the current strategies for restoration of the reduced substrate degradation within the lysosome are enzyme replacement therapy (ERT), cell-mediated therapy (CMT) including bone marrow transplantation (BMT) and cell-mediated “cross correction”, gene therapy, and enzyme-enhancement therapy with chemical chaperones. The reduction of substrate influx into the lysosomes can be achieved by substrate reduction therapy. Patients suffering from the attenuated form (type 1) of Gaucher disease and from Fabry disease have been successfully treated with ERT. © 2006 Elsevier B.V. All rights reserved. Keywords: Ceramide; Lysosomal storage disease; Saposin; Sphingolipidose Contents 1. Sphingolipid structure, function and biosynthesis ..........................................2058 1.1. -
Characterization of a Mutation in a Family with Saposin B Deficiency
Proc. Nadl. Acad. Sci. USA Vol. 87, pp. 2541-2544, April 1990 Genetics Characterization of a mutation in a family with saposin B deficiency: A glycosylation site defect (sphingolipid activator protein/SAP-1/metachromatic leukodystrophy/arylsulfatase A) KEITH A. KRETZ*, GEOFFREY S. CARSON*, SATOSHI MORIMOTO*t, YASUO KISHIMOTO*, ARVAN L. FLUHARTYt, AND JOHN S. O'BPUEN*§ *Department of Neurosciences and Center for Molecular Genetics, University of California, San Diego, School of Medicine, M-034J, La Jolla, CA 92093; and tUniversity of California, Los Angeles, Mental Retardation Research Center Group at Lanterman Developmental Center, Pomona, CA 91766 Communicated by Dan L. Lindsley, January 19, 1990 ABSTRACT Saposins are small, heat-stable glycoproteins these four saposin proteins has now been isolated and their required for the hydrolysis of sphingolipids by specific lyso- activating properties have been determined (3-14). somal hydrolases. Saposins A, B, C, and D are derived by Saposins A and C specifically activate hydrolysis of glu- proteolytic processing from a single precursor protein named cocerebroside byB-glucosylceramidase (D-glucosyl-N-acyl- prosaposin. Saposin B, previously known as SAP-1 and sul- sphingosine glucohydrolase; EC 3.2.1.45) and ofgalactocere- fatide activator, stimulates the hydrolysis of a wide variety of broside by galactosylceramidase (D-galactosyl-N-acyl- substrates including cerebroside sulfate, GM1 ganglioside, and sphingosine galactohydrolase; EC 3.2.1.46) (3, 4). Saposin D globotriaosylceramide by arylsulfatase A, acid 8-galacto- specifically activates the hydrolysis of sphingomyelin by sidase, and a-galactosidase, respectively. Human saposin B sphingomyelin phosphodiesterase (sphingomyelin choline- deficiency, transmitted as an autosomal recessive trait, results phosphohydrolase; EC 3.1.4.12) (5). -
Supplementary Table S4. FGA Co-Expressed Gene List in LUAD
Supplementary Table S4. FGA co-expressed gene list in LUAD tumors Symbol R Locus Description FGG 0.919 4q28 fibrinogen gamma chain FGL1 0.635 8p22 fibrinogen-like 1 SLC7A2 0.536 8p22 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 DUSP4 0.521 8p12-p11 dual specificity phosphatase 4 HAL 0.51 12q22-q24.1histidine ammonia-lyase PDE4D 0.499 5q12 phosphodiesterase 4D, cAMP-specific FURIN 0.497 15q26.1 furin (paired basic amino acid cleaving enzyme) CPS1 0.49 2q35 carbamoyl-phosphate synthase 1, mitochondrial TESC 0.478 12q24.22 tescalcin INHA 0.465 2q35 inhibin, alpha S100P 0.461 4p16 S100 calcium binding protein P VPS37A 0.447 8p22 vacuolar protein sorting 37 homolog A (S. cerevisiae) SLC16A14 0.447 2q36.3 solute carrier family 16, member 14 PPARGC1A 0.443 4p15.1 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha SIK1 0.435 21q22.3 salt-inducible kinase 1 IRS2 0.434 13q34 insulin receptor substrate 2 RND1 0.433 12q12 Rho family GTPase 1 HGD 0.433 3q13.33 homogentisate 1,2-dioxygenase PTP4A1 0.432 6q12 protein tyrosine phosphatase type IVA, member 1 C8orf4 0.428 8p11.2 chromosome 8 open reading frame 4 DDC 0.427 7p12.2 dopa decarboxylase (aromatic L-amino acid decarboxylase) TACC2 0.427 10q26 transforming, acidic coiled-coil containing protein 2 MUC13 0.422 3q21.2 mucin 13, cell surface associated C5 0.412 9q33-q34 complement component 5 NR4A2 0.412 2q22-q23 nuclear receptor subfamily 4, group A, member 2 EYS 0.411 6q12 eyes shut homolog (Drosophila) GPX2 0.406 14q24.1 glutathione peroxidase -
Correlation Between Human Epidermal
Gynecologic Oncology 99 (2005) 415 – 421 www.elsevier.com/locate/ygyno Correlation between human epidermal growth factor receptor family (EGFR, HER2, HER3, HER4), phosphorylated Akt (P-Akt), and clinical outcomes after radiation therapy in carcinoma of the cervixi Christopher M. Lee a, Dennis C. Shrieve a, Karen A. Zempolich b, R. Jeffrey Lee c, Elizabeth Hammond d, Diana L. Handrahan e, David K. Gaffney a,* a Department of Radiation Oncology, Huntsman Cancer Hospital and University of Utah Medical Center, 1950 Circle of Hope, Salt Lake City, UT 84112, USA b Department of Gynecologic Oncology, University of Utah Medical Center, Salt Lake City, UT 84112, USA c Department of Radiation Oncology, LDS Hospital, Salt Lake City, UT 84143, USA d Department of Pathology, LDS Hospital, Salt Lake City, UT 84143, USA e Statistical Data Center, LDS Hospital, Salt Lake City, UT 84143, USA Received 13 January 2005 Available online 12 September 2005 Abstract Objective. To investigate prognostic significance of and correlations between HER1 (EGFR), HER2 (c-erb-B2), HER3 (c-erb-B3), HER4 (c- erb-B4), and phosphorylated Akt (P-Akt) in patients treated with radiation for cervical carcinoma. Methods. Fifty-five patients with stages I–IVA cervical carcinoma were treated with definitive radiotherapy. Tumor expression of each biomarker was quantitatively scored by an automated immunohistochemical imaging system. Parametric correlations were performed between biomarkers. Univariate and multivariate analysis was performed with disease-free survival (DFS) and overall survival (OS) as primary endpoints. Results. Correlations were observed between expression of HER2 and HER4 (P = 0.003), and HER3 and HER4 (P = 0.004). -
Protein Expression Profiles in Pancreatic Adenocarcinoma
[CANCER RESEARCH 64, 9018–9026, December 15, 2004] Protein Expression Profiles in Pancreatic Adenocarcinoma Compared with Normal Pancreatic Tissue and Tissue Affected by Pancreatitis as Detected by Two- Dimensional Gel Electrophoresis and Mass Spectrometry Jianjun Shen,1 Maria D. Person,2 Jijiang Zhu,3 James L. Abbruzzese,3 and Donghui Li3 1Department of Carcinogenesis, Science Park-Research Division, The University of Texas M. D. Anderson Cancer Center, Smithville, Texas; 2Division of Pharmacology and Toxicology, The University of Texas, Austin, Texas; and 3Department of Gastrointestinal Medical Oncology, The University of Texas M. D. Anderson Cancer Center, Houston, Texas ABSTRACT revealed a large number of differentially expressed genes but little overlap of identified genes among various gene expression ap- Pancreatic cancer is a rapidly fatal disease, and there is an urgent need proaches. Furthermore, although genetic mutation and/or errant gene for early detection markers and novel therapeutic targets. The current expression may underlie a disease, the biochemical bases for most study has used a proteomic approach of two-dimensional (2D) gel elec- trophoresis and mass spectrometry (MS) to identify differentially ex- diseases are caused by protein defects. Therefore, profiling differen- pressed proteins in six cases of pancreatic adenocarcinoma, two normal tially expressed proteins is perhaps the most important and useful adjacent tissues, seven cases of pancreatitis, and six normal pancreatic approach in development of diagnostic screening and therapeutic tissues. Protein extracts of individual sample and pooled samples of each techniques. type of tissues were separated on 2D gels using two different pH ranges. The proteomic approach has offered many opportunities and chal- Differentially expressed protein spots were in-gel digested and identified lenges in identifying new tumor markers and therapeutic targets and in by MS. -
2016 Mock Exam General Pathology Answer Sheet
Name___________________________ 2016 Mock Exam General Pathology 1. You have 1 HOUR to complete this 50-question multiple choice exam. 2. Write your name on all pages of the exam packet. 3. Use capital letters on the answer sheet. 4. For each question, select the ONE best answer and mark it on the answer sheet. 5. Credit will be given only for correct answers recorded on the answer sheet. 6. All questions for which more than one answer is marked will be recorded as incorrect. 7. No credit will be awarded or deducted for incorrect answers. 8. Turn in the entire exam packet when you are done. 2016 Mock Exam General Pathology Answer sheet 1. ______ 26. ______ 2. ______ 27. ______ 3. ______ 28. ______ 4. ______ 29. ______ 5. ______ 30. ______ 6. ______ 31. ______ 7. ______ 32. ______ 8. ______ 33. ______ 9. ______ 34. ______ 10. ______ 35. ______ 11. ______ 36. ______ 12. ______ 37. ______ 13. ______ 38. ______ 14. ______ 39. ______ 15. ______ 40. ______ 16. ______ 41. ______ 17. ______ 42. ______ 18. ______ 43. ______ 19. ______ 44. ______ 20. ______ 45. ______ 21. ______ 46. ______ 22. ______ 47. ______ 23. ______ 48. ______ 24. ______ 49. ______ 25. ______ 50. ______ ii 2016 Mock Exam Name___________________________ General Pathology 1. Which of the following toxins reaches its target cell using retrograde axonal transport? a. tetanospasmin b. botulinum toxin c. syntaxin d. SNAP-25 2. All of the following EXCEPT which are true regarding high mobility group box protein 1 (HMGB-1)? a. -
Structural Study of the Acid Sphingomyelinase Protein Family
Structural Study of the Acid Sphingomyelinase Protein Family Alexei Gorelik Department of Biochemistry McGill University, Montreal August 2017 A thesis submitted to McGill University in partial fulfillment of the requirements of the degree of Doctor of Philosophy © Alexei Gorelik, 2017 Abstract The acid sphingomyelinase (ASMase) converts the lipid sphingomyelin (SM) to ceramide. This protein participates in lysosomal lipid metabolism and plays an additional role in signal transduction at the cell surface by cleaving the abundant SM to ceramide, thus modulating membrane properties. These functions are enabled by the enzyme’s lipid- and membrane- interacting saposin domain. ASMase is part of a small family along with the poorly characterized ASMase-like phosphodiesterases 3A and 3B (SMPDL3A,B). SMPDL3A does not hydrolyze SM but degrades extracellular nucleotides, and is potentially involved in purinergic signaling. SMPDL3B is a regulator of the innate immune response and podocyte function, and displays a partially defined lipid- and membrane-modifying activity. I carried out structural studies to gain insight into substrate recognition and molecular functions of the ASMase family of proteins. Crystal structures of SMPDL3A uncovered the helical fold of a novel C-terminal subdomain, a slightly distinct catalytic mechanism, and a nucleotide-binding mode without specific contacts to their nucleoside moiety. The ASMase investigation revealed a conformational flexibility of its saposin domain: this module can switch from a detached, closed conformation to an open form which establishes a hydrophobic interface to the catalytic domain. This open configuration represents the active form of the enzyme, likely allowing lipid access to the active site. The SMPDL3B structure showed a narrow, boot-shaped substrate binding site that accommodates the head group of SM. -
A Possible Role for Arylsulfatase G in Dermatan Sulfate Metabolism
International Journal of Molecular Sciences Article A Possible Role for Arylsulfatase G in Dermatan Sulfate Metabolism Aleksandra Poterala-Hejmo 1,*, Adam Golda 2 , Marcin Pacholczyk 1 , Sebastian Student 1, Anna Tylki-Szyma´nska 3 and Anna Lalik 1,* 1 Department of Systems Biology and Engineering, Silesian University of Technology, 44-100 Gliwice, Poland; [email protected] (M.P.); [email protected] (S.S.) 2 Department of Cardiology, 4th Municipal Hospital, 44-100 Gliwice, Poland; [email protected] 3 Department of Pediatrics, Nutrition and Metabolic Diseases, The Children’s Memorial Health Institute, 04-730 Warsaw, Poland; [email protected] * Correspondence: [email protected] (A.P.-H.); [email protected] (A.L.); Tel.: +48-32-2371168 (A.P.-H.); +48-32-2372769 (A.L.) Received: 2 June 2020; Accepted: 6 July 2020; Published: 12 July 2020 Abstract: Perturbations of glycosaminoglycan metabolism lead to mucopolysaccharidoses (MPS)—lysosomal storage diseases. One type of MPS (type VI) is associated with a deficiency of arylsulfatase B (ARSB), for which we previously established a cellular model using pulmonary artery endothelial cells with a silenced ARSB gene. Here, we explored the effects of silencing the ARSB gene on the growth of human pulmonary artery smooth muscle cells in the presence of different concentrations of dermatan sulfate (DS). The viability of pulmonary artery smooth muscle cells with a silenced ARSB gene was stimulated by the dermatan sulfate. In contrast, the growth of pulmonary artery endothelial cells was not affected. As shown by microarray analysis, the expression of the arylsulfatase G (ARSG) in pulmonary artery smooth muscle cells increased after silencing the arylsulfatase B gene, but the expression of genes encoding other enzymes involved in the degradation of dermatan sulfate did not. -
Human Induced Pluripotent Stem Cell–Derived Podocytes Mature Into Vascularized Glomeruli Upon Experimental Transplantation
BASIC RESEARCH www.jasn.org Human Induced Pluripotent Stem Cell–Derived Podocytes Mature into Vascularized Glomeruli upon Experimental Transplantation † Sazia Sharmin,* Atsuhiro Taguchi,* Yusuke Kaku,* Yasuhiro Yoshimura,* Tomoko Ohmori,* ‡ † ‡ Tetsushi Sakuma, Masashi Mukoyama, Takashi Yamamoto, Hidetake Kurihara,§ and | Ryuichi Nishinakamura* *Department of Kidney Development, Institute of Molecular Embryology and Genetics, and †Department of Nephrology, Faculty of Life Sciences, Kumamoto University, Kumamoto, Japan; ‡Department of Mathematical and Life Sciences, Graduate School of Science, Hiroshima University, Hiroshima, Japan; §Division of Anatomy, Juntendo University School of Medicine, Tokyo, Japan; and |Japan Science and Technology Agency, CREST, Kumamoto, Japan ABSTRACT Glomerular podocytes express proteins, such as nephrin, that constitute the slit diaphragm, thereby contributing to the filtration process in the kidney. Glomerular development has been analyzed mainly in mice, whereas analysis of human kidney development has been minimal because of limited access to embryonic kidneys. We previously reported the induction of three-dimensional primordial glomeruli from human induced pluripotent stem (iPS) cells. Here, using transcription activator–like effector nuclease-mediated homologous recombination, we generated human iPS cell lines that express green fluorescent protein (GFP) in the NPHS1 locus, which encodes nephrin, and we show that GFP expression facilitated accurate visualization of nephrin-positive podocyte formation in -
Lab Dept: Chemistry Test Name: ARYLSULFATASE A, LEUKOCYTES
Lab Dept: Chemistry Test Name: ARYLSULFATASE A, LEUKOCYTES General Information Lab Order Codes: ARYL Synonyms: Metachromic Leukodystrophy; Mucolipidoses, Types II and III; ARS-A (Arylsulfatase A); WBC Aryl Sulfatase A CPT Codes: 82657 – Enzyme activity in blood cells, cultured cells, or tissue, not elsewhere specified; nonradioactive substrate Test Includes: Arylsulfatase A, Leukocyte level reported in nmol/h/mg. Logistics Test Indications: Leukocyte assay is the preferred test to order first to rule out metachromatic leukodystrophy. Not reliable in identifying carriers due both to analytical variation and unusual genetic variants. The urine assay should be used in confirming leukocyte results. Lab Testing Sections: Chemistry - Sendouts Referred to: Mayo Medical Laboratories (MML Test: ARSAW) Phone Numbers: MIN Lab: 612-813-6280 STP Lab: 651-220-6550 Test Availability: Daily, 24 hours (Specimen must be received by reference lab within 96 hours of collection and must be received 1 day prior to assay day for processing) Turnaround Time: 8 – 15 days; test set up Tuesday Special Instructions: Specimen must arrive within 48 hours of draw. Obtain special collection tube from the laboratory. Specimen Specimen Type: Whole blood Container: Yellow top (ACD Solution B) tube available from laboratory Alternate: Yellow top (ACD Solution A) Draw Volume: 6 mL (Minimum: 5 mL) ACD Whole blood Processed Volume: Same as Draw Volume Collection: Routine blood collection Special Processing: Lab Staff: Do Not process specimen, leave in original draw container.