Chapter 7. Sex Determining Mechanisms in Vertebrates Sarah B
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DNA Barcode of Parodontidae Species from the La Plata River Basin - Applying New Data to Clarify Taxonomic Problems
Neotropical Ichthyology, 11(3):497-506, 2013 Copyright © 2013 Sociedade Brasileira de Ictiologia DNA barcode of Parodontidae species from the La Plata river basin - applying new data to clarify taxonomic problems Elisangela Bellafronte1, Tatiane Casagrande Mariguela2, Luiz Henrique Garcia Pereira2, Claudio Oliveira2 and Orlando Moreira-Filho1 In the past years, DNA barcoding has emerged as a quick, accurate and efficient tool to identify species. Considering the difficulty in identifying some Parodontidae species from the La Plata basin and the absence of molecular data for the group, we aimed to test the effectiveness of DNA barcoding and discuss the importance of using different approaches to solve taxonomic problems. Eight species were analyzed with partial sequences of Cytochrome c oxidase I. The mean intraspecific K2P genetic distance was 0.04% compared to 4.2% for mean interspecific K2P genetic distance. The analyses of distance showed two pairs of species with K2P genetic divergence lower than 2%, but enough to separate these species. Apareiodon sp. and A. ibitiensis, considered as the same species by some authors, showed 4.2% genetic divergence, reinforcing their are different species. Samples of A. affinis from the Uruguay and Paraguay rivers presented 0.3% genetic divergence, indicating a close relationship between them. However, these samples diverged 6.1% from the samples of the upper Paraná River, indicating that the latter represents a potentially new species. The results showed the effectiveness of the DNA barcoding method in identifying the analyzed species, which, together with the morphological and cytogenetic available data, help species identification. Nos últimos anos o DNA barcoding surgiu como uma ferramenta rápida, precisa e eficiente para identificar espécies. -
Zootaxa, Apareiodon Agmatos, a New Species from The
Zootaxa 1925: 31–38 (2008) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA Copyright © 2008 · Magnolia Press ISSN 1175-5334 (online edition) Apareiodon agmatos, a new species from the upper Mazaruni river, Guyana (Teleostei: Characiformes: Parodontidae) DONALD C. TAPHORN B.1, HERNÁN LÓPEZ-FERNÁNDEZ 2 & CALVIN R. BERNARD3 1Museo de Ciencias Naturales de Guanare, BioCentro, UNELLEZ, Mesa de Cavacas, Guanare 3310, Estado Portuguesa, Venezuela. E-mail: [email protected] 2Department of Natural History, Royal Ontario Museum, 100 Queen’s Park, Toronto, Ontario M5S 2C6, Canada. E-mail: [email protected] 3Center for the Study of Biodiversity, University of Guyana, Georgetown, Guyana. E-mail: [email protected] Abstract Apareiodon agmatos, new species, is described from the upper Mazaruni River and its tributaries, Essequibo Basin, in western Guyana. The new species is distinguishable from all other species of Parodontidae by having an incomplete lat- eral line. The scales of A. agmatos are more numerous than in any previously described parodontid. It has five incisor- like pedunculate teeth on the premaxilla aligned in a straight row, each with a large central spatulate cusp bordered on each side by a minute lateral cusp. The maxilla has two or infrequently three incisors. It shares an unusual pigmentation pattern of one dorsomedial and four lateral black stripes with A. gransabana, which was described from the neighboring upper Río Caroní drainage, Orinoco Basin. Apareiodon agmatos also shares with A. gransabana and Parodon guyanen- sis a higher number (5 versus 4) of teeth than other members of the genus in the premaxillary. Apareiodon agmatos and A. -
Character Assessment, Genus Level Boundaries, and Phylogenetic Analyses of the Family Rhacophoridae: a Review and Present Day Status
Contemporary Herpetology ISSN 1094-2246 2000 Number 2 7 April 2000 CHARACTER ASSESSMENT, GENUS LEVEL BOUNDARIES, AND PHYLOGENETIC ANALYSES OF THE FAMILY RHACOPHORIDAE: A REVIEW AND PRESENT DAY STATUS Jeffery A. Wilkinson ([email protected]) and Robert C. Drewes ([email protected]) Department of Herpetology, California Academy of Sciences, Golden Gate Park, San Francisco, California 94118 Abstract. The first comprehensive phylogenetic analysis of the family Rhacophoridae was conducted by Liem (1970) scoring 81 species for 36 morphological characters. Channing (1989), in a reanalysis of Liem’s study, produced a phylogenetic hypothesis different from that of Liem. We compared the two studies and produced a third phylogenetic hypothesis based on the same characters. We also present the synapomorphic characters from Liem that define the major clades and each genus within the family. Finally, we summarize intergeneric relationships within the family as hypothesized by other studies, and the family’s current status as it relates to other ranoid families. The family Rhacophoridae is comprised of over 200 species of Asian and African tree frogs that have been categorized into 10 genera and two subfamilies (Buergerinae and Rhacophorinae; Duellman, 1993). Buergerinae is a monotypic category that accommodates the relatively small genus Buergeria. The remaining genera, Aglyptodactylus, Boophis, Chirixalus, Chiromantis, Nyctixalus, Philautus, Polyp edates, Rhacophorus, and Theloderma, comprise Rhacophorinae (Channing, 1989). The family is part of the neobatrachian clade Ranoidea, which also includes the families Ranidae, Hyperoliidae, Dendrobatidae, Arthroleptidae, the genus Hemisus, and possibly the family Microhylidae. The Ranoidea clade is distinguished from other neobatrachians by the synapomorphic characters of completely fused epicoracoid cartilages, the medial end of the coracoid being wider than the lateral end, and the insertion of the semitendinosus tendon being dorsal to the m. -
Buergeria Japonica) Tadpoles from Island Populations
Volume 26 (July 2016), 207–211 FULL PAPER Herpetological Journal Published by the British Salinity and thermal tolerance of Japanese stream tree Herpetological Society frog (Buergeria japonica) tadpoles from island populations Shohei Komaki1, 2, Takeshi Igawa1, 2, Si-Min Lin3 & Masayuki Sumida2 1Division of Developmental Science, Graduate School of International Development and Cooperation, Hiroshima University, Hiroshima, Japan 2Institute for Amphibian Biology, Graduate School of Science, Hiroshima University, Hiroshima, Japan 3Department of Life Science, National Taiwan Normal University, Taipei, Taiwan Physiological tolerance to variable environmental conditions is essential for species to disperse over habitat boundaries and sustain populations in new habitats. In particular, salinity and temperature are one of the major factors determining species’ distributions. The tree frog Buergeria japonica is the most widely distributed amphibian species found in the Ryukyu Archipelago in Japan and Taiwan, and uses a wide range of breeding sites. Such characteristics suggest a high salinity and thermal tolerance in B. japonica tadpoles. We measured the salinity and thermal tolerance of tadpoles from three islands to determine if physiological tolerance could have contributed to the wide dispersal and survival across different environments. The critical salinity of B. japonica was 10–11‰, a value markedly below seawater. We also observed a critical maximum temperature of approximately 40°C, a value which is higher than what is commonly observed -
Cytogenetic Studies in Some Apareiodon Species (Pisces, Parodontidae)
C 2000 The Japan Mendel Society Cytologia 65: 397-402,2000 Cytogenetic Studies in Some Apareiodon Species (Pisces, Parodontidae) Celia Maria de Jesus* and Orlando Moreira-Filho Departamento de Genetica e Evolucbo, Universidade Federal de Sdo Carlos Rodovia Washington Luis, km 235, Caixa Postal 676, CEP 13565-905, Sdo Carlos, SP, Brasil Accepted September 8, 2000 Summary Cytogenetic studies in 6 species of Apareiodon (Pisces, Parodontidae) from different Brazilian hydrographic basins showed a diploid number equal to 2n=54 chromosomes and the ab- sence of morphologically differentiated sex chromosomes. Although the diploid and the fundamental numbers had been constant, some differences were observed concerning the karyotypic structure of the species. A. ibitiensis, Apareiodon sp. A and Apareiodon sp. B presented 50M/SM+4ST chromo- somes, while A. piracicabae, A. vittatus and Apareiodon sp. C presented 52M/SM+2ST ones. Apareiodon piracicabae showed a polymorphism in relation to the number and position of the nucle- olar organizer regions (NORs), while A. vittatus showed a variation in the NORs size. The available data indicate that the Parodontidae family have been submitted to a chromosomal diversification dur- ing their species differentiation process, despite the maintenance of the same diploid number. Key words Apareiodon, Karyotypic evolution, NOR, C-band. The Characiformes fish are widely distributed in the neotropical region, showing a wide varia- tion in the diploid number. Two general trends in the chromosomal evolution can be observed in this order. In fact, some groups show a heterogeneous evolutionary with a diversity in the chromo- some number and the karyotypic structure. In contrast, a more homogenous pattern can be observed in other groups, leading to a relatively stable karyotypes. -
Molecular Phylogeny and Phylogeography of Reed Warblers and Allies (Aves: Acrocephalidae)
Dissertation submitted to the Combined Faculties for the Natural Sciences and for Mathematics of the Ruperto-Carola University of Heidelberg, Germany for the degree of Doctor of Natural Sciences presented by Tayebeh Arbabi Born in Mashhad, Iran Oral examination: 26 June 2014 Molecular Phylogeny and Phylogeography of Reed Warblers and Allies (Aves: Acrocephalidae) Referees: Prof. Dr. Michael Wink Prof. Dr. Marcus Koch i Table of contents Zusammenfassung..................................................................................................................... v Summary .................................................................................................................................. vi Abbreviations ......................................................................................................................... vii Publications ........................................................................................................................... viii 1 Introduction ............................................................................................................................ 1 1.1 General introduction ......................................................................................................... 1 1.1.1 Avian taxonomy ......................................................................................................... 1 1.1.2 Phylogeny and phylogeography ................................................................................. 2 1.1.3 Molecular markers .................................................................................................... -
Chaetostoma Milesi) Ecological Risk Screening Summary
Spotted Rubbernose Pleco (Chaetostoma milesi) Ecological Risk Screening Summary U.S. Fish & Wildlife Service, March 2014 Revised, November 2016, November 2017 Web Version, 9/10/2018 Photo: Frank Alvarez. Licensed under Creative Commons BY 3.0. Available: http://www.fishbase.org/photos/UploadedBy.php?autoctr=9310&win=uploaded. (March 31, 2014). 1 Native Range and Status in the United States Native Range From Froese and Pauly (2017): “South America: Magdalena and Apuré River basins.” From Ballen et al. (2016): “The new species [Chaetostoma joropo] has been long confused with Chaetostoma milesi, a species with similar overall morphology and color pattern that is restricted to the Magdalena- Cauca River Basin.” 1 Status in the United States No records of Chaetostoma milesi in the wild or in trade United States were found. Means of Introductions in the United States No records of Chaetostoma milesi in the United States were found. Remarks From Ballen et al. (2016): “The new species [Chaetostoma joropo] has been long confused with Chaetostoma milesi, a species with similar overall morphology and color pattern that is restricted to the Magdalena- Cauca River Basin.” 2 Biology and Ecology Taxonomic Hierarchy and Taxonomic Standing According to Eschmeyer et al. (2017), Chaetostoma milesi Fowler 1941 is the valid name for this species. It is also the original name. From ITIS (2013): “Kingdom Animalia Subkingdom Bilateria Infrakingdom Deuterostomia Phylum Chordata Subphylum Vertebrata Infraphylum Gnathostomata Superclass Osteichthyes Class Actinopterygii -
Evolutionary and Conservation Genetics of the Seychelles Warbler ( Acrocephalus Sechellensis )
Evolutionary and conservation genetics of the Seychelles warbler ( Acrocephalus sechellensis ) David John Wright A thesis submitted for the degree of Doctor of Philosophy School of Biological Sciences University of East Anglia, UK May 2014 © This copy of the thesis has been supplied on condition that anyone who consults it is understood to recognise that its copyright rests with the author and that use of any information derived there from must be in accordance with current UK Copyright Law. In addition, any quotation or extract must include full attribution. This thesis is dedicated to Laura, my wife and partner-in-crime, for the endless supply of love, support, tea and cake. ii Abstract In this thesis, I investigated how evolutionary forces and conservation action interact to shape neutral and adaptive genetic variation within and among populations. To accomplish this, I studied an island species, the Seychelles warbler (Acrocephalus sechellensis ), with microsatellite markers and major histocompatibility complex (MHC) genes as measures of neutral and adaptive variation respectively. First, I used museum DNA and historical records to reveal a recent bottleneck that provides context for the contemporary genetic variation observed in this species. I then determined the impact of four translocations on genetic diversity over two decades. I found that diversity does not differ significantly between islands but the use of smaller founder sizes in two translocations has caused population divergence. These results indicate that stochastic genetic capture is important in translocations and that future assisted gene flow between populations may be necessary. As a tool for conservation practitioners, I wrote a technical report of the most recent translocation - to Frégate Island - detailing practicalities and outcomes to help inform future translocation policy. -
Niche Enlargement As a Consequence of Co-Existence
Niche enlargement as a consequence of co-existence: a case study Mazzoni, R.a*, Marques, PS.a, Rezende, CF.a,c and Iglesias-Rios, R.b aDepartamento de Ecologia, Instituto de Biologia Roberto Alcantara Gomes, Universidade do Estado do Rio de Janeiro – UERJ, Rua São Francisco Xavier, 524, CEP 20550-013, Rio de Janeiro, RJ, Brazil bDepartamento de Ecologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro – UFRJ, CP 68020, Rio de Janeiro, RJ, Brazil cDepartamento de Biologia, Universidade Federal do Ceará – UFC, CEP 60455-970, Fortaleza, CE, Brazil *e-mail: [email protected] Received March 22, 2011 – Accepted July 04, 2011 – Distributed May 31, 2012 (With 4 figures) Abstract Spatio-temporal changes in the diet, niche breadth and niche overlap of two species of Characidium from three different sites along a Neotropical coastal stream were studied during a dry and rainy season. Seasonal changes were restricted to the occurrence of plant items in the stomach contents. The relative importance of food items in the diet of both species varied across sites, but Diptera, Ephemeroptera, Simuliidae, Trichoptera and Coleoptera larvae were always the main prey items. Contrary to the expected pattern, values of the niche breadth were higher at the site where Characidium species co-existed and niche overlapped at this site indicated 52% (p = 0.52) of feeding overlap. Keywords: neotropical characidae, coastal stream, close related species. Ampliação do nicho como consequência da co-existência: um estudo de caso Resumo Variações espaço-temporal na dieta, na amplitude e na sobreposição de nicho foram estudadas para duas espécies de Characidium de três localidades distintas de um riacho costeiro da região Neotropical, considerando-se as estações seca e chuvosa. -
336 Natural History Notes
336 NATURAL HISTORY NOTES in an introduced population in Florida, USA (Patrovic 1973. J. kuvangensis (Channing and Howell. 2003. Herpetol. Rev. 34:51– Herpetol. 7:49–51). The frog observed by Patrovic (1973, op. cit.) 52), Kassina lamottei (Rödel et al. 2000, op. cit.), and Kassina also had melanin on the dorsal skin between the eyes but its eyes maculata (Liedtke and Müller 2012. Herpetol. Notes. 5:309– were pink. 310). Here we report observations of death–feigning for two We thank the Environment Conservation Fund and the Hong additional Kassina species: K. maculosa and K. arboricola. On Kong Government for supporting this work. 23 May 2018, we observed death-feigning behavior exhibited by HO-NAM NG, FRANCO KA-WAH LEUNG and WING-HO LEE, K. maculosa, while surveying a small forest patch on the Batéké Department of Biology, Hong Kong Baptist University, Hong Kong SAR, Plateau in Lekety Village, Cuvette department, Republic of Congo China; YIK-HEI SUNG, Division of Ecology and Biodiversity, School of (1.59216°S, 14.95787°E; WGS 84; 381 m elev.). After hand capturing Biological Sciences, The University of Hong Kong (e-mail: heisyh@gmail. the individual, it curled into a ball and remained immobile (Fig. com). 1A); this was the only individual out of six who exhibited this response. This specimen is deposited at the Florida Museum of FEJERVARYA LIMNOCHARIS (Asian Rice Frog). DIET. Anurans Natural History (UF 185502). This is also the first country record are generalist feeders and in most cases gape-limited foragers. of K. maculosa for the Republic of Congo. -
Fundamental Experiments to Develop Eco-Friendly Techniques for Conserving Frog Habitat in Paddy Areas Escape Countermeasures for Frogs Falling Into Agricultural Concrete Canals
JARQ 44 (4), 405 – 413 (2010) http://www.jircas.affrc.go.jpFundamental Experiment of Eco-friendly Techniques for Frogs in Paddy Areas Fundamental Experiments to Develop Eco-friendly Techniques for Conserving Frog Habitat in Paddy Areas: Escape Countermeasures for Frogs Falling into Agricultural Concrete Canals Keiji WATABE*, Atsushi MORI, Noriyuki KOIZUMI and Takeshi TAKEMURA Department of Rural Environment, National Institute for Rural Engineering, National Agriculture and Food Research Organization (Tsukuba, Ibaraki 305–8609, Japan) Abstract Frogs often drown in agricultural canals with deep concrete walls that are installed commonly in paddy areas after land consolidation projects in Japan because they cannot escape after falling into the canal. We propose a partial concrete canal with gently sloped walls as a countermeasure for frogs to escape the canal and investigated the preferable angle of the sloped walls, water depth and flow ve- locity for Rana porosa porosa. Our experiments showed that only 13 individuals (2%) escaped by leaping out of the canal, indicating that climbing up is the main escape behavior of R. p. porosa. Walls with slopes of 30–45 degrees allowed 50–60% of frogs to escape from experimental canals, the frogs especially easily climbed up walls with a 30 degree slope. Adjusting water depth to 5 cm or more would assist the frogs in reaching the escape countermeasures because at such depths frogs are not able to stand on the canal bottom and to move freely about. Flow velocity should be slower around the countermeasures because R. p. porosa is not good at long-distance swimming and cannot remain under running water for a long time. -
A Rapid Biological Assessment of the Upper Palumeu River Watershed (Grensgebergte and Kasikasima) of Southeastern Suriname
Rapid Assessment Program A Rapid Biological Assessment of the Upper Palumeu River Watershed (Grensgebergte and Kasikasima) of Southeastern Suriname Editors: Leeanne E. Alonso and Trond H. Larsen 67 CONSERVATION INTERNATIONAL - SURINAME CONSERVATION INTERNATIONAL GLOBAL WILDLIFE CONSERVATION ANTON DE KOM UNIVERSITY OF SURINAME THE SURINAME FOREST SERVICE (LBB) NATURE CONSERVATION DIVISION (NB) FOUNDATION FOR FOREST MANAGEMENT AND PRODUCTION CONTROL (SBB) SURINAME CONSERVATION FOUNDATION THE HARBERS FAMILY FOUNDATION Rapid Assessment Program A Rapid Biological Assessment of the Upper Palumeu River Watershed RAP (Grensgebergte and Kasikasima) of Southeastern Suriname Bulletin of Biological Assessment 67 Editors: Leeanne E. Alonso and Trond H. Larsen CONSERVATION INTERNATIONAL - SURINAME CONSERVATION INTERNATIONAL GLOBAL WILDLIFE CONSERVATION ANTON DE KOM UNIVERSITY OF SURINAME THE SURINAME FOREST SERVICE (LBB) NATURE CONSERVATION DIVISION (NB) FOUNDATION FOR FOREST MANAGEMENT AND PRODUCTION CONTROL (SBB) SURINAME CONSERVATION FOUNDATION THE HARBERS FAMILY FOUNDATION The RAP Bulletin of Biological Assessment is published by: Conservation International 2011 Crystal Drive, Suite 500 Arlington, VA USA 22202 Tel : +1 703-341-2400 www.conservation.org Cover photos: The RAP team surveyed the Grensgebergte Mountains and Upper Palumeu Watershed, as well as the Middle Palumeu River and Kasikasima Mountains visible here. Freshwater resources originating here are vital for all of Suriname. (T. Larsen) Glass frogs (Hyalinobatrachium cf. taylori) lay their