Chapter 21 Pathwidth and Planar Graph Drawing
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Bayes Nets Conclusion Inference
Bayes Nets Conclusion Inference • Three sets of variables: • Query variables: E1 • Evidence variables: E2 • Hidden variables: The rest, E3 Cloudy P(W | Cloudy = True) • E = {W} Sprinkler Rain 1 • E2 = {Cloudy=True} • E3 = {Sprinkler, Rain} Wet Grass P(E 1 | E 2) = P(E 1 ^ E 2) / P(E 2) Problem: Need to sum over the possible assignments of the hidden variables, which is exponential in the number of variables. Is exact inference possible? 1 A Simple Case A B C D • Suppose that we want to compute P(D = d) from this network. A Simple Case A B C D • Compute P(D = d) by summing the joint probability over all possible values of the remaining variables A, B, and C: P(D === d) === ∑∑∑ P(A === a, B === b,C === c, D === d) a,b,c 2 A Simple Case A B C D • Decompose the joint by using the fact that it is the product of terms of the form: P(X | Parents(X)) P(D === d) === ∑∑∑ P(D === d | C === c)P(C === c | B === b)P(B === b | A === a)P(A === a) a,b,c A Simple Case A B C D • We can avoid computing the sum for all possible triplets ( A,B,C) by distributing the sums inside the product P(D === d) === ∑∑∑ P(D === d | C === c)∑∑∑P(C === c | B === b)∑∑∑P(B === b| A === a)P(A === a) c b a 3 A Simple Case A B C D This term depends only on B and can be written as a 2- valued function fA(b) P(D === d) === ∑∑∑ P(D === d | C === c)∑∑∑P(C === c | B === b)∑∑∑P(B === b| A === a)P(A === a) c b a A Simple Case A B C D This term depends only on c and can be written as a 2- valued function fB(c) === === === === === === P(D d) ∑∑∑ P(D d | C c)∑∑∑P(C c | B b)f A(b) c b …. -
On Treewidth and Graph Minors
On Treewidth and Graph Minors Daniel John Harvey Submitted in total fulfilment of the requirements of the degree of Doctor of Philosophy February 2014 Department of Mathematics and Statistics The University of Melbourne Produced on archival quality paper ii Abstract Both treewidth and the Hadwiger number are key graph parameters in structural and al- gorithmic graph theory, especially in the theory of graph minors. For example, treewidth demarcates the two major cases of the Robertson and Seymour proof of Wagner's Con- jecture. Also, the Hadwiger number is the key measure of the structural complexity of a graph. In this thesis, we shall investigate these parameters on some interesting classes of graphs. The treewidth of a graph defines, in some sense, how \tree-like" the graph is. Treewidth is a key parameter in the algorithmic field of fixed-parameter tractability. In particular, on classes of bounded treewidth, certain NP-Hard problems can be solved in polynomial time. In structural graph theory, treewidth is of key interest due to its part in the stronger form of Robertson and Seymour's Graph Minor Structure Theorem. A key fact is that the treewidth of a graph is tied to the size of its largest grid minor. In fact, treewidth is tied to a large number of other graph structural parameters, which this thesis thoroughly investigates. In doing so, some of the tying functions between these results are improved. This thesis also determines exactly the treewidth of the line graph of a complete graph. This is a critical example in a recent paper of Marx, and improves on a recent result by Grohe and Marx. -
Randomly Coloring Graphs of Logarithmically Bounded Pathwidth Shai Vardi
Randomly coloring graphs of logarithmically bounded pathwidth Shai Vardi To cite this version: Shai Vardi. Randomly coloring graphs of logarithmically bounded pathwidth. 2018. hal-01832102 HAL Id: hal-01832102 https://hal.archives-ouvertes.fr/hal-01832102 Preprint submitted on 6 Jul 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Randomly coloring graphs of logarithmically bounded pathwidth Shai Vardi∗ Abstract We consider the problem of sampling a proper k-coloring of a graph of maximal degree ∆ uniformly at random. We describe a new Markov chain for sampling colorings, and show that it mixes rapidly on graphs of logarithmically bounded pathwidth if k ≥ (1 + )∆, for any > 0, using a new hybrid paths argument. ∗California Institute of Technology, Pasadena, CA, 91125, USA. E-mail: [email protected]. 1 Introduction A (proper) k-coloring of a graph G = (V; E) is an assignment σ : V ! f1; : : : ; kg such that neighboring vertices have different colors. We consider the problem of sampling (almost) uniformly at random from the space of all k-colorings of a graph.1 The problem has received considerable attention from the computer science community in recent years, e.g., [12, 17, 24, 26, 33, 44, 45]. -
K-Outerplanar Graphs, Planar Duality, and Low Stretch Spanning Trees
k-Outerplanar Graphs, Planar Duality, and Low Stretch Spanning Trees Yuval Emek∗ Abstract Low distortion probabilistic embedding of graphs into approximating trees is an extensively studied topic. Of particular interest is the case where the approximating trees are required to be (subgraph) spanning trees of the given graph (or multigraph), in which case, the focus is usually on the equivalent problem of finding a (single) tree with low average stretch. Among the classes of graphs that received special attention in this context are k-outerplanar graphs (for a fixed k): Chekuri, Gupta, Newman, Rabinovich, and Sinclair show that every k-outerplanar graph can be probabilistically embedded into approximating trees with constant distortion regardless of the size of the graph. The approximating trees in the technique of Chekuri et al. are not necessarily spanning trees, though. In this paper it is shown that every k-outerplanar multigraph admits a spanning tree with constant average stretch. This immediately translates to a constant bound on the distortion of probabilistically embedding k-outerplanar graphs into their spanning trees. Moreover, an efficient randomized algorithm is presented for constructing such a low average stretch spanning tree. This algorithm relies on some new insights regarding the connection between low average stretch spanning trees and planar duality. Keywords: planar graphs, outerplanarity, average stretch, planar dual. ∗Microsoft Israel R&D Center, Herzelia, Israel and School of Electrical Engineering, Tel Aviv University, Tel Aviv, Israel. E-mail: [email protected]. Supported in part by the Israel Science Foundation, grants 221/07 and 664/05. 1 Introduction The problem. -
Planar Graph Theory We Say That a Graph Is Planar If It Can Be Drawn in the Plane Without Edges Crossing
Planar Graph Theory We say that a graph is planar if it can be drawn in the plane without edges crossing. We use the term plane graph to refer to a planar depiction of a planar graph. e.g. K4 is a planar graph Q1: The following is also planar. Find a plane graph version of the graph. A B F E D C A Method that sometimes works for drawing the plane graph for a planar graph: 1. Find the largest cycle in the graph. 2. The remaining edges must be drawn inside/outside the cycle so that they do not cross each other. Q2: Using the method above, find a plane graph version of the graph below. A B C D E F G H non e.g. K3,3: K5 Here are three (plane graph) depictions of the same planar graph: J N M J K J N I M K K I N M I O O L O L L A face of a plane graph is a region enclosed by the edges of the graph. There is also an unbounded face, which is the outside of the graph. Q3: For each of the plane graphs we have drawn, find: V = # of vertices of the graph E = # of edges of the graph F = # of faces of the graph Q4: Do you have a conjecture for an equation relating V, E and F for any plane graph G? Q5: Can you name the 5 Platonic Solids (i.e. regular polyhedra)? (This is a geometry question.) Q6: Find the # of vertices, # of edges and # of faces for each Platonic Solid. -
Tree Structures
Tree Structures Definitions: o A tree is a connected acyclic graph. o A disconnected acyclic graph is called a forest o A tree is a connected digraph with these properties: . There is exactly one node (Root) with in-degree=0 . All other nodes have in-degree=1 . A leaf is a node with out-degree=0 . There is exactly one path from the root to any leaf o The degree of a tree is the maximum out-degree of the nodes in the tree. o If (X,Y) is a path: X is an ancestor of Y, and Y is a descendant of X. Root X Y CSci 1112 – Algorithms and Data Structures, A. Bellaachia Page 1 Level of a node: Level 0 or 1 1 or 2 2 or 3 3 or 4 Height or depth: o The depth of a node is the number of edges from the root to the node. o The root node has depth zero o The height of a node is the number of edges from the node to the deepest leaf. o The height of a tree is a height of the root. o The height of the root is the height of the tree o Leaf nodes have height zero o A tree with only a single node (hence both a root and leaf) has depth and height zero. o An empty tree (tree with no nodes) has depth and height −1. o It is the maximum level of any node in the tree. CSci 1112 – Algorithms and Data Structures, A. -
A Simple Linear-Time Algorithm for Finding Path-Decompostions of Small Width
Introduction Preliminary Definitions Pathwidth Algorithm Summary A Simple Linear-Time Algorithm for Finding Path-Decompostions of Small Width Kevin Cattell Michael J. Dinneen Michael R. Fellows Department of Computer Science University of Victoria Victoria, B.C. Canada V8W 3P6 Information Processing Letters 57 (1996) 197–203 Kevin Cattell, Michael J. Dinneen, Michael R. Fellows Linear-Time Path-Decomposition Algorithm Introduction Preliminary Definitions Pathwidth Algorithm Summary Outline 1 Introduction Motivation History 2 Preliminary Definitions Boundaried graphs Path-decompositions Topological tree obstructions 3 Pathwidth Algorithm Main result Linear-time algorithm Proof of correctness Other results Kevin Cattell, Michael J. Dinneen, Michael R. Fellows Linear-Time Path-Decomposition Algorithm Introduction Preliminary Definitions Motivation Pathwidth Algorithm History Summary Motivation Pathwidth is related to several VLSI layout problems: vertex separation link gate matrix layout edge search number ... Usefullness of bounded treewidth in: study of graph minors (Robertson and Seymour) input restrictions for many NP-complete problems (fixed-parameter complexity) Kevin Cattell, Michael J. Dinneen, Michael R. Fellows Linear-Time Path-Decomposition Algorithm Introduction Preliminary Definitions Motivation Pathwidth Algorithm History Summary History General problem(s) is NP-complete Input: Graph G, integer t Question: Is tree/path-width(G) ≤ t? Algorithmic development (fixed t): O(n2) nonconstructive treewidth algorithm by Robertson and Seymour (1986) O(nt+2) treewidth algorithm due to Arnberg, Corneil and Proskurowski (1987) O(n log n) treewidth algorithm due to Reed (1992) 2 O(2t n) treewidth algorithm due to Bodlaender (1993) O(n log2 n) pathwidth algorithm due to Ellis, Sudborough and Turner (1994) Kevin Cattell, Michael J. Dinneen, Michael R. -
Minimal Acyclic Forbidden Minors for the Family of Graphs with Bounded Path-Width
Discrete Mathematics 127 (1994) 293-304 293 North-Holland Minimal acyclic forbidden minors for the family of graphs with bounded path-width Atsushi Takahashi, Shuichi Ueno and Yoji Kajitani Department of Electrical and Electronic Engineering, Tokyo Institute of Technology. Tokyo, 152. Japan Received 27 November 1990 Revised 12 February 1992 Abstract The graphs with bounded path-width, introduced by Robertson and Seymour, and the graphs with bounded proper-path-width, introduced in this paper, are investigated. These families of graphs are minor-closed. We characterize the minimal acyclic forbidden minors for these families of graphs. We also give estimates for the numbers of minimal forbidden minors and for the numbers of vertices of the largest minimal forbidden minors for these families of graphs. 1. Introduction Graphs we consider are finite and undirected, but may have loops and multiple edges unless otherwise specified. A graph H is a minor of a graph G if H is isomorphic to a graph obtained from a subgraph of G by contracting edges. A family 9 of graphs is said to be minor-closed if the following condition holds: If GEB and H is a minor of G then H EF. A graph G is a minimal forbidden minor for a minor-closed family F of graphs if G#8 and any proper minor of G is in 9. Robertson and Seymour proved the following deep theorems. Theorem 1.1 (Robertson and Seymour [15]). Every minor-closed family of graphs has a finite number of minimal forbidden minors. Theorem 1.2 (Robertson and Seymour [14]). -
Characterizations of Restricted Pairs of Planar Graphs Allowing Simultaneous Embedding with Fixed Edges
Characterizations of Restricted Pairs of Planar Graphs Allowing Simultaneous Embedding with Fixed Edges J. Joseph Fowler1, Michael J¨unger2, Stephen Kobourov1, and Michael Schulz2 1 University of Arizona, USA {jfowler,kobourov}@cs.arizona.edu ⋆ 2 University of Cologne, Germany {mjuenger,schulz}@informatik.uni-koeln.de ⋆⋆ Abstract. A set of planar graphs share a simultaneous embedding if they can be drawn on the same vertex set V in the Euclidean plane without crossings between edges of the same graph. Fixed edges are common edges between graphs that share the same simple curve in the simultaneous drawing. Determining in polynomial time which pairs of graphs share a simultaneous embedding with fixed edges (SEFE) has been open. We give a necessary and sufficient condition for when a pair of graphs whose union is homeomorphic to K5 or K3,3 can have an SEFE. This allows us to determine which (outer)planar graphs always an SEFE with any other (outer)planar graphs. In both cases, we provide efficient al- gorithms to compute the simultaneous drawings. Finally, we provide an linear-time decision algorithm for deciding whether a pair of biconnected outerplanar graphs has an SEFE. 1 Introduction In many practical applications including the visualization of large graphs and very-large-scale integration (VLSI) of circuits on the same chip, edge crossings are undesirable. A single vertex set can be used with multiple edge sets that each correspond to different edge colors or circuit layers. While the pairwise union of all edge sets may be nonplanar, a planar drawing of each layer may be possible, as crossings between edges of distinct edge sets are permitted. -
Minor-Closed Graph Classes with Bounded Layered Pathwidth
Minor-Closed Graph Classes with Bounded Layered Pathwidth Vida Dujmovi´c z David Eppstein y Gwena¨elJoret x Pat Morin ∗ David R. Wood { 19th October 2018; revised 4th June 2020 Abstract We prove that a minor-closed class of graphs has bounded layered pathwidth if and only if some apex-forest is not in the class. This generalises a theorem of Robertson and Seymour, which says that a minor-closed class of graphs has bounded pathwidth if and only if some forest is not in the class. 1 Introduction Pathwidth and treewidth are graph parameters that respectively measure how similar a given graph is to a path or a tree. These parameters are of fundamental importance in structural graph theory, especially in Roberston and Seymour's graph minors series. They also have numerous applications in algorithmic graph theory. Indeed, many NP-complete problems are solvable in polynomial time on graphs of bounded treewidth [23]. Recently, Dujmovi´c,Morin, and Wood [19] introduced the notion of layered treewidth. Loosely speaking, a graph has bounded layered treewidth if it has a tree decomposition and a layering such that each bag of the tree decomposition contains a bounded number of vertices in each layer (defined formally below). This definition is interesting since several natural graph classes, such as planar graphs, that have unbounded treewidth have bounded layered treewidth. Bannister, Devanny, Dujmovi´c,Eppstein, and Wood [1] introduced layered pathwidth, which is analogous to layered treewidth where the tree decomposition is arXiv:1810.08314v2 [math.CO] 4 Jun 2020 required to be a path decomposition. -
Lowest Common Ancestors in Trees and Directed Acyclic Graphs1
Lowest Common Ancestors in Trees and Directed Acyclic Graphs1 Michael A. Bender2 3 Martín Farach-Colton4 Giridhar Pemmasani2 Steven Skiena2 5 Pavel Sumazin6 Version: We study the problem of finding lowest common ancestors (LCA) in trees and directed acyclic graphs (DAGs). Specifically, we extend the LCA problem to DAGs and study the LCA variants that arise in this general setting. We begin with a clear exposition of Berkman and Vishkin’s simple optimal algorithm for LCA in trees. The ideas presented are not novel theoretical contributions, but they lay the foundation for our work on LCA problems in DAGs. We present an algorithm that finds all-pairs-representative : LCA in DAGs in O~(n2 688 ) operations, provide a transitive-closure lower bound for the all-pairs-representative-LCA problem, and develop an LCA-existence algorithm that preprocesses the DAG in transitive-closure time. We also present a suboptimal but practical O(n3) algorithm for all-pairs-representative LCA in DAGs that uses ideas from the optimal algorithms in trees and DAGs. Our results reveal a close relationship between the LCA, all-pairs-shortest-path, and transitive-closure problems. We conclude the paper with a short experimental study of LCA algorithms in trees and DAGs. Our experiments and source code demonstrate the elegance of the preprocessing-query algorithms for LCA in trees. We show that for most trees the suboptimal Θ(n log n)-preprocessing Θ(1)-query algorithm should be preferred, and demonstrate that our proposed O(n3) algorithm for all- pairs-representative LCA in DAGs performs well in both low and high density DAGs. -
Separator Theorems and Turán-Type Results for Planar Intersection Graphs
SEPARATOR THEOREMS AND TURAN-TYPE¶ RESULTS FOR PLANAR INTERSECTION GRAPHS JACOB FOX AND JANOS PACH Abstract. We establish several geometric extensions of the Lipton-Tarjan separator theorem for planar graphs. For instance, we show that any collection C of Jordan curves in the plane with a total of m p 2 crossings has a partition into three parts C = S [ C1 [ C2 such that jSj = O( m); maxfjC1j; jC2jg · 3 jCj; and no element of C1 has a point in common with any element of C2. These results are used to obtain various properties of intersection patterns of geometric objects in the plane. In particular, we prove that if a graph G can be obtained as the intersection graph of n convex sets in the plane and it contains no complete bipartite graph Kt;t as a subgraph, then the number of edges of G cannot exceed ctn, for a suitable constant ct. 1. Introduction Given a collection C = fγ1; : : : ; γng of compact simply connected sets in the plane, their intersection graph G = G(C) is a graph on the vertex set C, where γi and γj (i 6= j) are connected by an edge if and only if γi \ γj 6= ;. For any graph H, a graph G is called H-free if it does not have a subgraph isomorphic to H. Pach and Sharir [13] started investigating the maximum number of edges an H-free intersection graph G(C) on n vertices can have. If H is not bipartite, then the assumption that G is an intersection graph of compact convex sets in the plane does not signi¯cantly e®ect the answer.