Conservation Status Assessment and a New Method for Establishing Conservation Priorities for Freshwater Mussels
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Gene Family Amplification Facilitates Adaptation in Freshwater Unionid
Gene family amplification facilitates adaptation in freshwater unionid bivalve Megalonaias nervosa Rebekah L. Rogers1∗, Stephanie L. Grizzard1;2, James E. Titus-McQuillan1, Katherine Bockrath3;4 Sagar Patel1;5;6, John P. Wares3;7, Jeffrey T Garner8, Cathy C. Moore1 Author Affiliations: 1. Department of Bioinformatics and Genomics, University of North Carolina, Charlotte, NC 2. Department of Biological Sciences, Old Dominion University, Norfolk, VA 3. Department of Genetics, University of Georgia, Athens, GA 4. U.S. Fish and Wildlife Service, Midwest Fisheries Center Whitney Genetics Lab, Onalaska, WI 5. Department of Biology, Saint Louis University, St. Louis, MO 6. Donald Danforth Plant Science Center, St. Louis, MO 7. Odum School of Ecology, University of Georgia, Athens, GA 8. Division of Wildlife and Freshwater Fisheries, Alabama Department of Conservation and Natural Resources, Florence, AL *Corresponding author: Department of Bioinformatics and Genomics, University of North Carolina, Charlotte, NC. [email protected] Keywords: Unionidae, M. nervosa, Evolutionary genomics, gene family expansion, arXiv:2008.00131v2 [q-bio.GN] 16 Nov 2020 transposable element evolution, Cytochrome P450, Population genomics, reverse ecological genetics Short Title: Gene family expansion in Megalonaias nervosa 1 Abstract Freshwater unionid bivalves currently face severe anthropogenic challenges. Over 70% of species in the United States are threatened, endangered or extinct due to pollution, damming of waterways, and overfishing. These species are notable for their unusual life history strategy, parasite-host coevolution, and biparental mitochondria inheritance. Among this clade, the washboard mussel Megalonaias nervosa is one species that remains prevalent across the Southeastern United States, with robust population sizes. We have created a reference genome for M. -
Environmental Changes in Chaohu Lake (Southeast, China) Since the Mid 20Th Century: the Interactive Impacts of Nutrients, Hydrology and Climate
Limnologica 43 (2013) 10–17 Contents lists available at SciVerse ScienceDirect Limnologica journal homepage: www.elsevier.com/locate/limno Environmental changes in Chaohu Lake (southeast, China) since the mid 20th century: The interactive impacts of nutrients, hydrology and climate Xu Chen a,b, Xiangdong Yang a,∗, Xuhui Dong a, Enfeng Liu a a State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, People’s Republic of China b Faculty of Earth Sciences, China University of Geosciences, Wuhan 430074, People’s Republic of China article info abstract Article history: Chaohu Lake, the fifth largest freshwater lake in the Yangtze floodplain, is faced with multiple stresses Received 21 June 2011 from anthropogenic disturbances and climate change. To explore the ecological changes in Chaohu Lake Received in revised form 31 October 2011 since the mid 20th century, we examined diatoms, geochemical indicators and particle size in 210Pb- Accepted 6 March 2012 dated sediment core from the lake. Diatom succession revealed that the lake had switched to a eutrophic Available online 11 June 2012 state since the late 1970s. Redundancy analysis using limnological data, hydrological and meteorological variables showed that sedimentary total phosphorus (TP) and total organic carbon (TOC), annual mean Keywords: temperature, annual mean wind velocity, and water-level amplitude (WLA) were five significant factors Diatoms Nutrient loading influencing diatom succession. Diatom assemblages from 1950 till 1978 were driven by WLA and wind. Hydrological alteration The establishment of Chaohu Dam baffled hydrological connectivity between the lake and the Yangtze Climate warming River in 1962, and reducing water exchange-induced flow. -
Supplement of a Systematic Examination of the Relationships Between CDOM and DOC in Inland Waters in China
Supplement of Hydrol. Earth Syst. Sci., 21, 5127–5141, 2017 https://doi.org/10.5194/hess-21-5127-2017-supplement © Author(s) 2017. This work is distributed under the Creative Commons Attribution 3.0 License. Supplement of A systematic examination of the relationships between CDOM and DOC in inland waters in China Kaishan Song et al. Correspondence to: Kaishan Song ([email protected]) The copyright of individual parts of the supplement might differ from the CC BY 3.0 License. Figure S1. Sampling location at three rivers for tracing the temporal variation of CDOM and DOC. The average widths at sampling stations are about 1020 m, 206m and 152 m for the Songhua River, Hunjiang River and Yalu River, respectively. Table S1 the sampling information for fresh and saline water lakes, the location information shows the central positions of the lakes. Res. is the abbreviation for reservoir; N, numbers of samples collected; Lat., latitude; Long., longitude; A, area; L, maximum length in kilometer; W, maximum width in kilometer. Water body type Sampling date N Lat. Long. A(km2) L (km) W (km) Fresh water lake Shitoukou Res. 2009.08.28 10 43.9319 125.7472 59 17 6 Songhua Lake 2015.04.29 8 43.6146 126.9492 185 55 6 Erlong Lake 2011.06.24 6 43.1785 124.8264 98 29 8 Xinlicheng Res. 2011.06.13 7 43.6300 125.3400 43 22 6 Yueliang Lake 2011.09.01 6 45.7250 123.8667 116 15 15 Nierji Res. 2015.09.16 8 48.6073 124.5693 436 83 26 Shankou Res. -
Determination of Geochronology and Sedimentation Rates of Shallow Lakes in the Middle Yangtze Reaches Using 210Pb, 137Cs and Spheroidal Carbonaceous Particles
Determination of geochronology and sedimentation rates of shallow lakes in the middle Yangtze reaches using 210Pb, 137Cs and spheroidal carbonaceous particles Xu Chen1*, Qianglong Qiao1, Suzanne McGowan2, Linghan Zeng1,2, Mark A Stevenson3, Lei Xu1, Chunling Huang1, Jia Liang1, Yanmin Cao4 1State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences, Wuhan 430074, China 2School of Geography, University of Nottingham, Nottingham NG7 2RD, UK 3School of Natural and Environmental Sciences, Newcastle University, Newcastle- upon-Tyne NE1 7RU, UK 4College of Resources and Environmental Science, South-Central University for Nationalities, Wuhan 430074, China *Corresponding author; e-mail address: [email protected] https://doi.org/10.1016/j.catena.2018.11.041 Catena Abstract: Accurate chronologies for recent sediments of shallow lakes in the Yangtze floodplain are critical to calibrate proxy records for reconstructing environmental changes during the past century. This study presents the results of detailed 210Pb analysis from eight lake sediment cores collected from the middle Yangtze reaches, 210 southeast China. Unsupported Pb activities generally declined exponentially with mass depth in the eight cores. The chronologies and sedimentation rates for the sediment cores were calculated using different 210Pb-based mathematical models. The 137Cs chronomarker (i.e. the 1963 fallout peak) and the spheroidal carbonaceous particle (SCP) chronomarker (i.e. the start of the rapid increase in 1970 AD) were selected to validate the 210Pb dating. Sedimentation rates derived from different models were validated using historical data including lake area, arable land area, sediment discharge and reservoir volume in the Yangtze basin. The SCP-corrected CRS (constant rate of supply) model performs better than other models, based on validation using historical documents in the Yangtze basin. -
Margaritanopsis (Unionidae) from Notes on Solenaia
XI DESCRIPTION OF A NEW SPECIES OF MARGARITANOPSIS (UNIONIDAE) FROM THE SOUTHERN SHAN STATES, WITH NOTES ON SOLENAIA SOLENIFORMIS By LT.-COL. H. a. GODWIN-AuSTEN, F.R.S. (With Plate XV.) . Feddon and Theobald \"ere the first to visit and collect mollusca in the, Shan country in 1864, but they did not penetrate to the neighbourhood of the Inle Lake which is not) as far as I can remember, mentioned in their Geological Reports. It was not until Colonel R. Woodthorpe, R.E., visited Fort Stedman in 1894 on his way to survey the Siam frontier that he obtained any shells from this piece of water or its neighbourhood. Among them is the remarkable large bivalve, which I have named after him, but never as yet had an opportunity of publishing. The animal has not yet been seen nor has that been described of its possible ally Solenaia solenilormis, Bs. of Cachar.l I append the description of U nio laosensis, to which the Shan species comes nearest. Genus Margaritanopsist Haas, 1912. Haas in Martini u. Chemnitz, S)'st. Conch. Cabinet, Bd. IX (ii) 2, pp. 121-122. pI. xii, figs. 1 .. 2 (1912). Laos Mountains, Cambodia., Siam. Mons. ].\t1ouhot. Diam. O'g, length I '2, breadth 3 inches. C, Torrey Simpson, Des. Cat. Na£ades, p. 520 (1914), Sowerby, Conch. Icon., XVI, pI. xlvii, f. 256 (1866). Type, U nio laosensis, Lea. It is thus described. "Shell elongated, arcnate, rather solid, not inflated, inequilateral; beaks slightly elevated, not full, thin sculpture consisting of ridges that nearly follow the growth lines, posterior ridge high. -
Atlas of the Freshwater Mussels (Unionidae)
1 Atlas of the Freshwater Mussels (Unionidae) (Class Bivalvia: Order Unionoida) Recorded at the Old Woman Creek National Estuarine Research Reserve & State Nature Preserve, Ohio and surrounding watersheds by Robert A. Krebs Department of Biological, Geological and Environmental Sciences Cleveland State University Cleveland, Ohio, USA 44115 September 2015 (Revised from 2009) 2 Atlas of the Freshwater Mussels (Unionidae) (Class Bivalvia: Order Unionoida) Recorded at the Old Woman Creek National Estuarine Research Reserve & State Nature Preserve, Ohio, and surrounding watersheds Acknowledgements I thank Dr. David Klarer for providing the stimulus for this project and Kristin Arend for a thorough review of the present revision. The Old Woman Creek National Estuarine Research Reserve provided housing and some equipment for local surveys while research support was provided by a Research Experiences for Undergraduates award from NSF (DBI 0243878) to B. Michael Walton, by an NOAA fellowship (NA07NOS4200018), and by an EFFRD award from Cleveland State University. Numerous students were instrumental in different aspects of the surveys: Mark Lyons, Trevor Prescott, Erin Steiner, Cal Borden, Louie Rundo, and John Hook. Specimens were collected under Ohio Scientific Collecting Permits 194 (2006), 141 (2007), and 11-101 (2008). The Old Woman Creek National Estuarine Research Reserve in Ohio is part of the National Estuarine Research Reserve System (NERRS), established by section 315 of the Coastal Zone Management Act, as amended. Additional information on these preserves and programs is available from the Estuarine Reserves Division, Office for Coastal Management, National Oceanic and Atmospheric Administration, U. S. Department of Commerce, 1305 East West Highway, Silver Spring, MD 20910. -
Conservation Status Assessment and a New Method for Establishing Conservation Priorities for Freshwater Mussels
Received: 8 March 2018 Revised: 9 November 2019 Accepted: 17 December 2019 DOI: 10.1002/aqc.3298 RESEARCH ARTICLE Conservation status assessment and a new method for establishing conservation priorities for freshwater mussels (Bivalvia: Unionida) in the middle and lower reaches of the Yangtze River drainage Xiongjun Liu1,2 | Xue Yang3 | David T. Zanatta4 | Manuel Lopes-Lima5 | Arthur E. Bogan6 | Alexandra Zieritz7,8 | Shan Ouyang3 | Xiaoping Wu1,2,3 1Key Laboratory of Poyang Lake Environment and Resource Utilization, School of Resources Abstract Environmental and Chemical Engineering, 1. The freshwater mussel (Unionida) fauna of the Yangtze River is among the most Nanchang University, Nanchang, People's Republic of China diverse on Earth. In recent decades, human activities have caused habitat degra- 2School of Resources Environmental & dation in the river, and previous studies estimated that up to 80% of the mussel Chemical Engineering, Nanchang University, species in the Yangtze River are Threatened or Near Threatened with extinction. Nanchang, People's Republic of China 3School of Life Sciences, Nanchang University, However, a comprehensive and systematic evaluation of the conservation status Nanchang, People's Republic of China of this fauna has yet to be completed. 4 Central Michigan University, Institute for 2. This study evaluated the conservation status of the 69 recognized freshwater Great Lakes Research, Mount Pleasant, MI mussel species in the middle and lower reaches of the Yangtze River, using the 5CIBIO/InBIO – Research Center -
Diatom Community Succession and Nutrient Evolution Recorded from a Sediment Core of the Longgan Lake, a Large Shallow Lake in East China
第 30 卷 第 6 期 水 生 生 物 学 报 Vol . 30 ,No . 6 2 0 0 6 年 1 1 月 ACTA HYDROBIOLOGICA SINICA Nov. , 2 0 0 6 DIATOM COMMUNITY SUCCESSION AND NUTRIENT EVOLUTION RECORDED FROM A SEDIMENT CORE OF THE LONGGAN LAKE, A LARGE SHALLOW LAKE IN EAST CHINA DONG Xu2Hui and YANG Xiang2Dong ( Nanjing Institute of Geography &Limnology , the Chinese Academy of Sciences , Nanjing 210008 , China) Abstract :The Longgan Lake is a shallow mesotrophic macrophyted2ominated lake. According to the high2resolution diatom research from its sediment core , the diatom community succession was built , and the total phosphorus (TP) and chlorophyll2a (Chl2a) con2 centration were quantitatively reconstructed for the past 2000 years , based on the diatom2TP and diatom2Chla transfer functions. The shifts of diatom assemblages also mirrored the developments of aquatic plant , reflecting the characters of aquatic ecosystem evolution. The inferred epilimnetic TP concentration fluctuated within a small range of 36 to 62μg/ L , indicating the lake remained a relative stable mesotrophic status in the long historical period. The periodical variations of the diatom assemblage and trophic sta2 tus suggest a mitigating function of shallow macrophyte2dominated lakes to nutrient input. The changes of lakesptrophic status donpt linearly respond to the human disturbance in the catchment. The dynamics mechanism of phosphorus in macrophyte2dominated lakes , as inferred from diatoms , will provide a scientific foundation for the prediction of trophic status change in a shallow lake , as well as the lake ecological restoration and management decisions. Key words :Diatom assemblage ; Nutrient ; Quantitative reconstruction ; Aquatic macrophyte ; Longgan Lake CLC number :X172 Document code :A Article ID :100023207(2006) 0620702209 The importance of aquatic vegetation to the ecologi2 on the environment reconstruction based on the sediment cal restoration has been recognized commonly by limnolo2 biomarker such as diatom have made rapid gists and lake managements[1 —4 ] . -
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The Complete Maternally and Paternally Inherited Mitochondrial Genomes of the Endangered Freshwater Mussel Solenaia Carinatus
The Complete Maternally and Paternally Inherited Mitochondrial Genomes of the Endangered Freshwater Mussel Solenaia carinatus (Bivalvia: Unionidae) and Implications for Unionidae Taxonomy Xiao-Chen Huang1,2, Jun Rong1, Yong Liu2, Ming-Hua Zhang2, Yuan Wan1,2, Shan Ouyang2, Chun-Hua Zhou1,2*, Xiao-Ping Wu1,2* 1 Center for Watershed Ecology, Institute of Life Science, Nanchang University, Nanchang, P. R. China, 2 School of Life Sciences and Food Engineering, Nanchang University, Nanchang, P. R. China Abstract Doubly uniparental inheritance (DUI) is an exception to the typical maternal inheritance of mitochondrial (mt) DNA in Metazoa, and found only in some bivalves. In species with DUI, there are two highly divergent gender-associated mt genomes: maternal (F) and paternal (M), which transmit independently and show different tissue localization. Solenaia carinatus is an endangered freshwater mussel species exclusive to Poyang Lake basin, China. Anthropogenic events in the watershed greatly threaten the survival of this species. Nevertheless, the taxonomy of S. carinatus based on shell morphology is confusing, and the subfamilial placement of the genus Solenaia remains unclear. In order to clarify the taxonomic status and discuss the phylogenetic implications of family Unionidae, the entire F and M mt genomes of S. carinatus were sequenced and compared with the mt genomes of diverse freshwater mussel species. The complete F and M mt genomes of S. carinatus are 16716 bp and 17102 bp in size, respectively. The F and M mt genomes of S. carinatus diverge by about 40% in nucleotide sequence and 48% in amino acid sequence. Compared to F counterparts, the M genome shows a more compact structure. -
A New Species of Solenaia from Thailand (Bivalvia: Unionidae: Ambleminae)
The Natural History Journal of Chulalongkorn University 3(2): 53-58, October 2003 ©2003 by Chulalongkorn University A new Species of Solenaia from Thailand (Bivalvia: Unionidae: Ambleminae) GRIDSADA DEEIN 1, YONGYUTH UNAKORNSAWAT 1, PARINDA RATTANADAENG 1 CHIRASAK SUTCHARIT 2, BANG-ON KONG-IM 2 AND SOMSAK PANHA 2* 1 Phitsanulok Inland Fisheries Research and Development Center, Inland Fisheries Research and Development Bureau, Department of Fisheries, Ministry of Agriculture and Cooperatives, Naraesuan Dam area, Prompiram District, Phitsanulok 65150, THAILAND 2 Mollusc Research Unit, Department of Biology, Faculty of Science, Chulalongkorn University, Phyathai Road, Bangkok 10330, THAILAND ABSTRACT.–Solenaia khwaenoiensis n. sp. (Bivalvia: Unionidae) is described from The Khwae Noi River, Phitsanulok, Thailand. Solenaia khwaenoiensis n. sp. has long razor-shell like shells similar to a former described Solenaia emarginatus (Lea, 1860) from “Siam”. The new species possesses an elongate linguiform shell but the narrow anterior and wide posterior confers a unique razor shell shape. The umbo is located towards the anterior near the adductor muscle scar. Solenaia khwaenoiensis exhibits distinct intrageneric differentiation in the diploid chromosome number (2n=37) but is uniform in haploid number (n=19), with 3 metacentric 15 submetacentric and 1 subtelocentric chromosomes. KEY WORDS: Solenaia khwaenoiensis; Unionidae; Khwae Noi River; Phitsanulok; Thailand. Solenaia khwaenoiensis was found in April INTRODUCTION 2003, in deep waters of the Khwae Noi River, Phitsanulok, Thailand (Fig. 1). Comparisons of Classification at the species level for shell and soft part morphology and karyotypes Southeast Asian unionid mussels is in urgent revealed that these specimens differ from all need of revision. On the basis of characters recognized 5 subfamilies of Thai Amblemidae such as a semi-oval glochidial shell shape and i.e. -
Potential Indicator Value of Subfossil Gastropods in Assessing the Ecological Health of the Middle and Lower Reaches of the Yangtze River Floodplain System (China)
geosciences Article Potential Indicator Value of Subfossil Gastropods in Assessing the Ecological Health of the Middle and Lower Reaches of the Yangtze River Floodplain System (China) Giri Kattel 1,2,3,*, Yongjiu Cai 1, Xiangdong Yang 1, Ke Zhang 1, Xu Hao 4, Rong Wang 1 and Xuhui Dong 5 1 State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology Chinese Academy of Sciences, Nanjing 210008, China; [email protected] (Y.C.); [email protected] (X.Y.); [email protected] (K.Z.); [email protected] (R.W.) 2 Environmental Hydrology and Water Resources Group, Department of Infrastructure Engineering, University of Melbourne, Melbourne, Parkville, VIC 3010, Australia 3 Department of Hydraulic Engineering, Tsinghua University, Beijing 100084, China 4 Hoan Environmental Monitoring Corporation, Nanjing 210008, China; [email protected] 5 School of Geographical Sciences, Gunagzhou University, Guangzhou 510006, China; [email protected] * Correspondence: [email protected]; Tel.: +61-428-171-180 Received: 20 April 2018; Accepted: 15 June 2018; Published: 17 June 2018 Abstract: The lakes across China’s middle and lower reaches of the Yangtze River system have a long history of sustaining human pressures. These aquatic resources have been exploited for fisheries and irrigation over millennia at a magnitude of scales, with the result that many lakes have lost their ecological integrity. The consequences of these changes in the ecosystem health of lakes are not fully understood; therefore, a long-term investigation is urgently needed. Gastropods (aquatic snails) are powerful bio-indicators that link primary producers, herbivores, and detritivores associated with macrophytes and grazers of periphyton and higher-level consumers.