Pharmacodynamics in Pharmacology - Terry Kenakin
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Ion Channels in Drug Discovery
Department of Physiology and Pharmacology Karolinska Institutet, Stockholm, Sweden Thesis for doctoral degree (Ph.D.) 2008 Thesis for doctoral degree (Ph.D.) 2008 Ion Channels in Drug Discovery - focus on biological assays Ion Channels in Drug Discovery - focus on biological assays Kim Dekermendjian Ion Channels in Drug Discovery - focus on biological - focus on in Drug assays Channels Discovery Ion Kim Dekermendjian Kim Dekermendjian Stockholm 2008 Department of Physiology and Pharmacology Karolinska Institutet, Stockholm, Sweden Ion Channels in Drug Discovery - focus on biological assays Kim Dekermendjian Stockholm 2008 Main Supervisor: Bertil B Fredholm, Professor Department of Physiology and Pharmacology Karolinska Institutet. Co-Supervisor: Olof Larsson, PhD Associated Director Department of Molecular Pharmacology, Astrazeneca R&D Södertälje. Opponent: Bjarke Ebert, Adjunct Professor Faculty of Pharmaceutical Sciences, University of Copenhagen, Denmark. and Department of Electrophysiology, H. Lundbeck A/S, Copenhagen, Denmark. Examination board: Ole Kiehn, Professor Department of Neurovetenskap, Karolinska Institutet. Bryndis Birnir, PhD Docent Department of Clinical Sciences, Lund University. Bo Rydqvist, Professor Department of Physiology and Pharmacology Karolinska Institutet. All previously published papers were reproduced with permission from the publisher. Front page (a) Side view of the GABA-A model; the trans membrane domain (TMD) (bottom) spans through the lipid membrane (32 Å) and partly on the extracellular side (12 Å), while the ligand binding domain (LBD) (top) is completely extracellular (60 Å). (b) The LBD viewed from the extracellular side (diameter of 80 Å). (c) The TMD viewed from the extracellular side. Arrows and ribbons (which correspond to ȕ-strands and Į- helices, respectively) are coloured according to position in each individual subunit sequence, as well as in the TM4 of each subunit which is not bonded to the rest of the model (with permission from Campagna-Slater and Weaver, 2007 Copyright © 2006 Elsevier Inc.). -
Pharmacokinetics, Biodistribution, and Pharmacodynamics of Drug Delivery Systems
JPET Fast Forward. Published on March 5, 2019 as DOI: 10.1124/jpet.119.257113 This article has not been copyedited and formatted. The final version may differ from this version. JPET # 257113 Title: Pharmacokinetic and Pharmacodynamic Properties of Drug Delivery Systems Authors: Patrick M. Glassman, Vladimir R. Muzykantov Affiliation: Department of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania Address: 3400 Civic Center Boulevard, Bldg 421, Philadelphia, Pennsylvania 19104-5158, United States Downloaded from jpet.aspetjournals.org at ASPET Journals on September 24, 2021 1 JPET Fast Forward. Published on March 5, 2019 as DOI: 10.1124/jpet.119.257113 This article has not been copyedited and formatted. The final version may differ from this version. JPET # 257113 Running Title: PK/PD Properties of Drug Delivery Systems Corresponding Authors: Vladimir R. Muzykantov ([email protected], (215) 898-9823) and Patrick M. Glassman ([email protected]) # of Text Pages: 22 # of Tables: 2 # of Figures: 4 Word Count – Abstract: 144 Word Count – Introduction: 350 Word Count – Discussion: N/A Downloaded from Non-Standard Abbreviations: Absorption, Distribution, Metabolism, and Elimination (ADME) Biodistribution (BD) Drug Delivery Systems (DDSs) Enhanced Permeability & Retention (EPR) jpet.aspetjournals.org Gastrointestinal (GI) Intravenously (IV) Neonatal Fc Receptor (FcRn) Monoclonal Antibody (mAb) Reticuloendothelial System (RES) at ASPET Journals on September 24, 2021 Pharmacodynamics (PD) Pharmacokinetics (PK) Physiologically-Based Pharmacokinetic (PBPK) Subcutaneously (SC) Target-Mediated Drug Disposition (TMDD) Recommended Section: Drug Discovery and Translational Medicine 2 JPET Fast Forward. Published on March 5, 2019 as DOI: 10.1124/jpet.119.257113 This article has not been copyedited and formatted. -
Clinical Pharmacology 1: Phase 1 Studies and Early Drug Development
Clinical Pharmacology 1: Phase 1 Studies and Early Drug Development Gerlie Gieser, Ph.D. Office of Clinical Pharmacology, Div. IV Objectives • Outline the Phase 1 studies conducted to characterize the Clinical Pharmacology of a drug; describe important design elements of and the information gained from these studies. • List the Clinical Pharmacology characteristics of an Ideal Drug • Describe how the Clinical Pharmacology information from Phase 1 can help design Phase 2/3 trials • Discuss the timing of Clinical Pharmacology studies during drug development, and provide examples of how the information generated could impact the overall clinical development plan and product labeling. Phase 1 of Drug Development CLINICAL DEVELOPMENT RESEARCH PRE POST AND CLINICAL APPROVAL 1 DISCOVERY DEVELOPMENT 2 3 PHASE e e e s s s a a a h h h P P P Clinical Pharmacology Studies Initial IND (first in human) NDA/BLA SUBMISSION Phase 1 – studies designed mainly to investigate the safety/tolerability (if possible, identify MTD), pharmacokinetics and pharmacodynamics of an investigational drug in humans Clinical Pharmacology • Study of the Pharmacokinetics (PK) and Pharmacodynamics (PD) of the drug in humans – PK: what the body does to the drug (Absorption, Distribution, Metabolism, Excretion) – PD: what the drug does to the body • PK and PD profiles of the drug are influenced by physicochemical properties of the drug, product/formulation, administration route, patient’s intrinsic and extrinsic factors (e.g., organ dysfunction, diseases, concomitant medications, -
Computational Approaches for Drug Design and Discovery: an Overview
Review Article Computational Approaches for Drug Design and Discovery: An Overview Baldi A College of Pharmacy, Dr. Shri R.M.S. Institute of Science & Technology, Bhanpura, Dist. Mandsaur (M.P.), India ARTICLE INFO ABSTRACT Article history: The process of drug discovery is very complex and requires an interdisciplinary effort to design Received 12 July 2009 effective and commercially feasible drugs. The objective of drug design is to find a chemical Accepted 21 July 2009 compound that can fit to a specific cavity on a protein target both geometrically and chemically. Available online 04 February 2010 After passing the animal tests and human clinical trials, this compound becomes a drug available Keywords: to patients. The conventional drug design methods include random screening of chemicals Computer-aided drug design found in nature or synthesized in laboratories. The problems with this method are long design Combinatorial chemistry cycle and high cost. Modern approach including structure-based drug design with the help Drug of informatic technologies and computational methods has speeded up the drug discovery Structure-based drug deign process in an efficient manner. Remarkable progress has been made during the past five years in almost all the areas concerned with drug design and discovery. An improved generation of softwares with easy operation and superior computational tools to generate chemically stable and worthy compounds with refinement capability has been developed. These tools can tap into cheminformation to shorten the cycle of drug discovery, and thus make drug discovery more cost-effective. A complete overview of drug discovery process with comparison of conventional approaches of drug discovery is discussed here. -
Principle of Pharmacodynamics
Principle of pharmacodynamics Dr. M. Emamghoreishi Full Professor Department of Pharmacology Medical School Shiraz University of Medical Sciences Email:[email protected] Reference: Basic & Clinical Pharmacology: Bertrum G. Katzung and Anthony J. Treveror, 13th edition, 2015, chapter 20, p. 336-351 Learning Objectives: At the end of sessions, students should be able to: 1. Define pharmacology and explain its importance for a clinician. 2. Define ―drug receptor‖. 3. Explain the nature of drug receptors. 4. Describe other sites of drug actions. 5. Explain the drug-receptor interaction. 6. Define the terms ―affinity‖, ―intrinsic activity‖ and ―Kd‖. 7. Explain the terms ―agonist‖ and ―antagonist‖ and their different types. 8. Explain chemical and physiological antagonists. 9. Explain the differences in drug responsiveness. 10. Explain tolerance, tachyphylaxis, and overshoot. 11. Define different dose-response curves. 12. Explain the information that can be obtained from a graded dose-response curve. 13. Describe the potency and efficacy of drugs. 14. Explain shift of dose-response curves in the presence of competitive and irreversible antagonists and its importance in clinical application of antagonists. 15. Explain the information that can be obtained from a quantal dose-response curve. 16. Define the terms ED50, TD50, LD50, therapeutic index and certain safety factor. What is Pharmacology?It is defined as the study of drugs (substances used to prevent, diagnose, and treat disease). Pharmacology is the science that deals with the interactions betweena drug and the bodyor living systems. The interactions between a drug and the body are conveniently divided into two classes. The actions of the drug on the body are termed pharmacodynamicprocesses.These properties determine the group in which the drug is classified, and they play the major role in deciding whether that group is appropriate therapy for a particular symptom or disease. -
Opportunities and Challenges in Phenotypic Drug Discovery: an Industry Perspective
PERSPECTIVES Nevertheless, there are still challenges in OPINION prospectively understanding the key success factors for modern PDD and how maximal Opportunities and challenges in value can be obtained. Articles published after the analysis by Swinney and Anthony have re-examined the contribution of PDD phenotypic drug discovery: an to new drug discovery6,7 and have refined the conditions for its successful application8. industry perspective Importantly, it is apparent on closer examination that the classification of drugs John G. Moffat, Fabien Vincent, Jonathan A. Lee, Jörg Eder and as ‘phenotypically discovered’ is somewhat Marco Prunotto inconsistent6,7 and that, in fact, the majority of successful drug discovery programmes Abstract | Phenotypic drug discovery (PDD) approaches do not rely on knowledge combine target knowledge and functional of the identity of a specific drug target or a hypothesis about its role in disease, in cellular assays to identify drug candidates contrast to the target-based strategies that have been widely used in the with the most advantageous molecular pharmaceutical industry in the past three decades. However, in recent years, there mechanism of action (MoA). Although there is clear evidence that phenotypic has been a resurgence in interest in PDD approaches based on their potential to screening can be an attractive proposition address the incompletely understood complexity of diseases and their promise for efficiently identifying functionally of delivering first-in-class drugs, as well as major advances in the tools for active hits that lead to first-in-class drugs, cell-based phenotypic screening. Nevertheless, PDD approaches also have the gap between a screening hit and an considerable challenges, such as hit validation and target deconvolution. -
Medicinal Chemistry for Drug Discovery | Charles River
Summary Medicinal chemistry is an integral part of bringing a drug through development. Our medicinal chemistry approach enables clients to benefit from efficient navigation of the early drug discovery process through to delivery of preclinical candidates. DISCOVERY Click to learn more Medicinal Chemistry for Drug Discovery Medicinal Chemistry A Proven Track Record in Drug Discovery Services: Our medicinal chemistry team has experience in progressing small molecule drug discovery programs across a broad range • Target identification of therapeutic areas and gene families. Our scientists are skilled in the design and synthesis of novel pharmacologically active - Capture Compound® mass compounds and understand the challenges facing modern drug discovery. Together, they are cited as inventors on over spectrometry (CCMS) 350 patents and have identified 80 preclinical candidates for client organizations across a variety of therapeutic areas. As • Hit-finding strategies project leaders, our chemists are fundamental in driving the program strategy and have consistently empowered our clients’ - Optimizing high-throughput success. A high proportion of candidates regularly progress to the clinic, and our first co-invented drug, Belinostat, received screening (HTS) hits marketing approval in 2015. As an organization, Charles River has worked on 85% of the therapies approved in 2018. • Hit-to-lead We have a deep understanding of the factors that drive medicinal chemistry design: structure-activity relationship (SAR), • Lead optimization biology, physical chemistry, drug metabolism and pharmacokinetics (DMPK), pharmacokinetic/pharmacodynamic (PK/PD) • Patent strategy modelling, and in vivo efficacy. Charles River scientists are skilled in structure-based and ligand-based design approaches • Preparation for IND filing utilizing our in-house computer-aided drug design (CADD) expertise. -
Overcoming the Immunosuppressive Tumor Microenvironment in Multiple Myeloma
cancers Review Overcoming the Immunosuppressive Tumor Microenvironment in Multiple Myeloma Fatih M. Uckun 1,2,3 1 Norris Comprehensive Cancer Center and Childrens Center for Cancer and Blood Diseases, University of Southern California Keck School of Medicine (USC KSOM), Los Angeles, CA 90027, USA; [email protected] 2 Department of Developmental Therapeutics, Immunology, and Integrative Medicine, Drug Discovery Institute, Ares Pharmaceuticals, St. Paul, MN 55110, USA 3 Reven Pharmaceuticals, Translational Oncology Program, Golden, CO 80401, USA Simple Summary: This article provides a comprehensive review of new and emerging treatment strategies against multiple myeloma that employ precision medicines and/or drugs capable of improving the ability of the immune system to prevent or slow down the progression of multiple myeloma. These rationally designed new treatment methods have the potential to change the therapeutic landscape in multiple myeloma and improve the long-term survival outcome. Abstract: SeverFigurel cellular elements of the bone marrow (BM) microenvironment in multiple myeloma (MM) patients contribute to the immune evasion, proliferation, and drug resistance of MM cells, including myeloid-derived suppressor cells (MDSCs), tumor-associated M2-like, “alter- natively activated” macrophages, CD38+ regulatory B-cells (Bregs), and regulatory T-cells (Tregs). These immunosuppressive elements in bidirectional and multi-directional crosstalk with each other inhibit both memory and cytotoxic effector T-cell populations as well as natural killer (NK) cells. Immunomodulatory imide drugs (IMiDs), protease inhibitors (PI), monoclonal antibodies (MoAb), Citation: Uckun, F.M. Overcoming the Immunosuppressive Tumor adoptive T-cell/NK cell therapy, and inhibitors of anti-apoptotic signaling pathways have emerged as Microenvironment in Multiple promising therapeutic platforms that can be employed in various combinations as part of a rationally Myeloma. -
Exploring Non-Covalent Interactions Between Drug-Like Molecules and the Protein Acetylcholinesterase
Exploring non-covalent interactions between drug-like molecules and the protein acetylcholinesterase Lotta Berg Doctoral Thesis, 2017 Department of Chemistry Umeå University, Sweden This work is protected by the Swedish Copyright Legislation (Act 1960:729) ISBN: 978-91-7601-644-2 Elektronisk version tillgänglig på http://umu.diva-portal.org/ Printed by: VMC-KBC Umeå Umeå, Sweden, 2017 “Life is a relationship between molecules, not a property of any one molecule” Emile Zuckerkandl and Linus Pauling 1962 i Table of contents Abstract vi Sammanfattning vii Papers covered in the thesis viii List of abbreviations x 1. Introduction 1 1.1. Drug discovery 1 1.2. The importance of non-covalent interactions 1 1.3. Fundamental forces of non-covalent interactions 2 1.4. Classes of non-covalent interactions 3 1.5. Hydrogen bonds 3 1.5.1. Definition of the hydrogen bond 3 1.5.2. Classical and non-classical hydrogen bonds 4 1.5.3. CH∙∙∙Y hydrogen bonds 5 1.6. Interactions between aromatic rings 6 1.7. Thermodynamics of binding 7 1.8. The essential enzyme acetylcholinesterase 8 1.8.1. The relevance of research focused on AChE 8 1.8.2. The structure of AChE 9 1.8.3. AChE in drug discovery 10 2. Scope of the thesis 12 3. Background to techniques and methods 13 3.1. Structure determination by X-ray crystallography 13 3.1.1. The significance of crystal structures of proteins 13 3.1.2. Data collection and structure refinement 13 3.1.3. Electron density maps 14 3.1.4. -
Drug Discovery - Yesterday and Tomorrow: the Common Approaches in Drug Design and Cancer
Cell & Cellular Life Sciences Journal Drug Discovery - Yesterday and Tomorrow: The Common Approaches in Drug Design and Cancer 1,2 1 3 Hamad ON *, Amran SIB and Sabbah AM Mini Review 1Faculty of Bioscience & Medical Engineering, Malaysia Volume 3 Issue 1 2University of Wasit, College of Medicine, Iraq Received Date: February 27, 2018 3Forensic DNA for research and training Centre, Al Nahrain University, Iraq Published Date: April 03, 2018 *Corresponding author: Oras Naji Hamad, Faculty of Bioscience & Medical Engineering, University of Technology, Malaysia, Tel: 01121715960; E-mail: [email protected] Abstract The process of drug discovery has undergone radical changes and development over years. Traditionally, the drugs were discovered by employing chemistry and pharmacology-based cautious approach. When natural products were the most important source of drugs or drug precursors, but the conventional randomized drug research phenomenon was no longer effective at that time due to many negatives of these approaches like: high expenses of discovering new drugs, time-consuming and reduced success guarantee. Thus, with the development of the era, the concept of “Rational Drug Design” has enabled drug target identification and validation to be more specific. In addition, several novel technologies and approaches have been introducing economics, proteomics and other omics areas such as 3D QSAR, pharmacophore modeling and other, which playing a promising role in accelerating the pace of drug discovery process. Their view of the current -
In Silico Pharmacodynamics, Toxicity Profile and Biological Activities of the Saharan Medicinal Plant Limoniastrum Feei
Brazilian Journal of Pharmaceutical Sciences Article http://dx.doi.org/10.1590/s2175-97902017000300061 In silico pharmacodynamics, toxicity profile and biological activities of the Saharan medicinal plant Limoniastrum feei Ouahab Ammar* Department of Pharmacy, Faculty of Medical Sciences, University of Batna 2, Algeria In-silico study was performed to find the pharmacodynamics, toxicity profiles and biological activities of three phytochemicals isolated from Limoniastrum feei (Plumbagenaceae). Online pharmacokinetic tools were used to estimate the potential of Quercetin, kaempferol-3-O-β-D-glucopyranoside (astragalin) and quercitin-7-O-β-D-glucopyranoside as specific drugs. Then the prediction of potential targets of these compounds were investigated using PharmMapper. Auto-Dock 4.0 software was used to investigate the different interactions of these compounds with the targets predicted earlier. The permeability of quercetin s rule of five. Hematopoietic prostaglandin (PG) D׳ was found within the range stated by Lipinski synthase (HPGDS), farnesyl diphosphate synthetase (FPPS) and the deoxycytidine kinase (DCK) were potential targets for quercetin, astragalin and quercetin 7, respectively. Quercetin showed antiallergic and anti-inflammatory activity, while astragalin and quercetin 7 were predicted to have anticancer activities. The activity of Astragalin appeared to be mediated by FPPS inhibition. The inhibition of DCK was predicted as the anticancer mechanisms of quercetin 7. The compounds showed interesting interactions and satisfactory binding energies when docked into their targets. These compounds are proposed to have activities against a variety of human aliments such as allergy, tumors, muscular dystrophy, and diabetic cataracts. Keywords: Limoniastrum feei/pharmacokinetics. Limoniastrum feei/biological activity. Quercetin. Astragalin. Quercetin 7. Medicinal plants. Molecular docking. -
Clinical Pharmacology of Antiмcancer Agents
A CLINI CLINICAL PHARMACOLOGY OF NTI- C ANTI-CANCER AGENTS C AL PHARMA AN Cristiana Sessa, Luca Gianni, Marina Garassino, Henk van Halteren www.esmo.org C ER A This is a user-friendly handbook, designed for young GENTS medical oncologists, where they can access the essential C information they need for providing the treatment which could OLOGY OF have the highest chance of being effective and tolerable. By finding out more about pharmacology from this handbook, young medical oncologists will be better able to assess the different options available and become more knowledgeable in the evaluation of new treatments. ESMO ESMO Handbook Series European Society for Medical Oncology CLINICAL PHARMACOLOGY OF Via Luigi Taddei 4, 6962 Viganello-Lugano, Switzerland Handbook Series ANTI-CANCER AGENTS Cristiana Sessa, Luca Gianni, Marina Garassino, Henk van Halteren ESMO Press · ISBN 978-88-906359-1-5 ISBN 978-88-906359-1-5 www.esmo.org 9 788890 635915 ESMO Handbook Series handbook_print_NEW.indd 1 30/08/12 16:32 ESMO HANDBOOK OF CLINICAL PHARMACOLOGY OF ANTI-CANCER AGENTS CM15 ESMO Handbook 2012 V14.indd1 1 2/9/12 17:17:35 ESMO HANDBOOK OF CLINICAL PHARMACOLOGY OF ANTI-CANCER AGENTS Edited by Cristiana Sessa Oncology Institute of Southern Switzerland, Bellinzona, Switzerland; Ospedale San Raffaele, IRCCS, Unit of New Drugs and Innovative Therapies, Department of Medical Oncology, Milan, Italy Luca Gianni Ospedale San Raffaele, IRCCS, Unit of New Drugs and Innovative Therapies, Department of Medical Oncology, Milan, Italy Marina Garassino Oncology Department, Istituto Nazionale dei Tumori, Milan, Italy Henk van Halteren Department of Internal Medicine, Gelderse Vallei Hospital, Ede, The Netherlands ESMO Press CM15 ESMO Handbook 2012 V14.indd3 3 2/9/12 17:17:35 First published in 2012 by ESMO Press © 2012 European Society for Medical Oncology All rights reserved.