Assembling the Squamate Tree of Life: Perspectives from the Phenotype and the Fossil Record Jacques A. Gauthier,1 Maureen Kearney,2 Jessica Anderson Maisano,3 Olivier Rieppel4 and Adam D.B. Behlke5 1 Corresponding author: Department of Geology and Geophysics, Yale University, P.O. Box 208109, New Haven CT 06520-8109 USA and Divisions of Vertebrate Paleontology and Vertebrate Zoology, Peabody Museum of Natural History, Yale University, P.O. Box 208118, New Haven CT 06520-8118 USA —email:
[email protected] 2 Division of Environmental Biology, National Science Foundation, Arlington VA 22230 USA 3 Jackson School of Geosciences, The University of Texas at Austin, Austin TX 78712 USA 4 Department of Geology, Field Museum of Natural History, 1400 S. Lake Shore Drive, Chicago, IL 60605-2496 USA 5 Department of Geology and Geophysics, Yale University, P.O. Box 208109, New Haven CT 06520-8109 USA Abstract We assembled a dataset of 192 carefully selected species—51 extinct and 141 extant—and 976 apo- morphies distributed among 610 phenotypic characters to investigate the phylogeny of Squamata (“lizards,” including snakes and amphisbaenians). These data enabled us to infer a tree much like those derived from previous morphological analyses, but with better support for some key clades. There are also several novel elements, some of which pose striking departures from traditional ideas about lizard evolution (e.g., that mosasaurs and polyglyphanodontians are on the scleroglos- san stem, rather than parts of the crown, and related to varanoids and teiids, respectively). Long- bodied, limb-reduced, “snake-like” fossorial lizards—most notably dibamids, amphisbaenians and snakes—have been and continue to be the chief source of character conflict in squamate morpho- logical phylogenetics.