Dynamic Pigmentary and Structural Coloration Within Cephalopod Chromatophore Organs
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The Case of Deirocheline Turtles
bioRxiv preprint doi: https://doi.org/10.1101/556670; this version posted February 21, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Body coloration and mechanisms of colour production in Archelosauria: 2 The case of deirocheline turtles 3 Jindřich Brejcha1,2*†, José Vicente Bataller3, Zuzana Bosáková4, Jan Geryk5, 4 Martina Havlíková4, Karel Kleisner1, Petr Maršík6, Enrique Font7 5 1 Department of Philosophy and History of Science, Faculty of Science, Charles University, Viničná 7, Prague 6 2, 128 00, Czech Republic 7 2 Department of Zoology, Natural History Museum, National Museum, Václavské nám. 68, Prague 1, 110 00, 8 Czech Republic 9 3 Centro de Conservación de Especies Dulceacuícolas de la Comunidad Valenciana. VAERSA-Generalitat 10 Valenciana, El Palmar, València, 46012, Spain. 11 4 Department of Analytical Chemistry, Faculty of Science, Charles University, Hlavova 8, Prague 2, 128 43, 12 Czech Republic 13 5 Department of Biology and Medical Genetics, 2nd Faculty of Medicine, Charles University and University 14 Hospital Motol, V Úvalu 84, 150 06 Prague, Czech Republic 15 6 Department of Food Science, Faculty of Agrobiology, Food, and Natural Resources, Czech University of Life 16 Sciences, Kamýcká 129, Prague 6, 165 00, Czech Republic 17 7 Ethology Lab, Cavanilles Institute of Biodiversity and Evolutionary Biology, University of Valencia, C/ 18 Catedrátic José Beltrán Martinez 2, Paterna, València, 46980, Spain 19 Keywords: Chelonia, Trachemys scripta, Pseudemys concinna, nanostructure, pigments, chromatophores 20 21 Abstract 22 Animal body coloration is a complex trait resulting from the interplay of multiple colour-producing mechanisms. -
Skin Patterning in Octopus Vulgaris and Its Importance for Camouflage
Skin patterning in Octopus vulgaris anditsimportance for camouflage DORSAL ANTERiOR POSTERIOR VENTRAL Wilma Meijer-Kuiper D490 Dqo "Scriptie"entitled: j Skin patterning in Octopus vulgaris and its importance for camouflage Author: Wilma Meijer-Kuiper. Supervisor: Dr. P.J. Geerlink. April, 1993. Cover figure from Wells, 1978. Department of Marine Biology, University of Groningen, Kerklaan 30, 9750 AA Haren, The Netherlands. TABLE OF CONTENTS PAGE Abstract 1 1. Introduction 2 1.1. Camouflage in marine invertebrates 2 1 .2. Cephalopods 2 2. General biology of the octopods 4 2.1. Octopus vulgar/s 4 3. Skin patterning in Octopus 6 3.1. Patterns 6 3.2. Components 8 3.3. Units 9 3.4. Elements 10 3.4.1. Chromatophores 10 3.4.2. Reflector cells and iridophores 16 3.4.3. Leucophores 18 4. The chromatic unit 20 5. Nervous system 22 5.1. Motor units 22 5.2. Electrical stimulation 22 5.3. Projection of nerves on the skin surface 24 5.4. The nervous control system 25 5.5. Neurotransmitters 27 6. Vision in cephalopods, particularly in O.vu!garis 28 6.1. Electro-physiological experiments 28 6.2. Photopigments and receptor cells 28 6.3. Behavioural (training) experiments 29 6.4. Eye movements and optomotor responses 29 7. Camouflage in a colour-blind animal 31 7.1. Matching methods 31 7.2. Countershading reflex 35 8. Conclusive remarks 36 Literature 38 ABSTRACT Camouflage is a method by which animals obtain concealment from other animals by blending in with their environment. Of the cephalopods, the octopods have an extra-ordinary ability to match their surroundings by changing the colour and texture of their skin. -
Pharaoh Cuttlefish, Sepia Pharaonis, Genome Reveals Unique Reflectin
fmars-08-639670 February 9, 2021 Time: 18:18 # 1 ORIGINAL RESEARCH published: 15 February 2021 doi: 10.3389/fmars.2021.639670 Pharaoh Cuttlefish, Sepia pharaonis, Genome Reveals Unique Reflectin Camouflage Gene Set Weiwei Song1,2, Ronghua Li1,2,3, Yun Zhao1,2, Herve Migaud1,2,3, Chunlin Wang1,2* and Michaël Bekaert3* 1 Key Laboratory of Applied Marine Biotechnology, Ministry of Education, Ningbo University, Ningbo, China, 2 Collaborative Innovation Centre for Zhejiang Marine High-Efficiency and Healthy Aquaculture, Ningbo University, Ningbo, China, 3 Institute of Aquaculture, Faculty of Natural Sciences, University of Stirling, Stirling, United Kingdom Sepia pharaonis, the pharaoh cuttlefish, is a commercially valuable cuttlefish species across the southeast coast of China and an important marine resource for the world fisheries. Research efforts to develop linkage mapping, or marker-assisted selection have been hampered by the absence of a high-quality reference genome. To address this need, we produced a hybrid reference genome of S. pharaonis using a long-read Edited by: platform (Oxford Nanopore Technologies PromethION) to assemble the genome and Andrew Stanley Mount, short-read, high quality technology (Illumina HiSeq X Ten) to correct for sequencing Clemson University, United States errors. The genome was assembled into 5,642 scaffolds with a total length of 4.79 Gb Reviewed by: and a scaffold N of 1.93 Mb. Annotation of the S. pharaonis genome assembly Simo Njabulo Maduna, 50 Norwegian Institute of Bioeconomy identified a total of 51,541 genes, including 12 copies of the reflectin gene, that enable Research (NIBIO), Norway cuttlefish to control their body coloration. -
Physics of Structural Colors
HOME | SEARCH | PACS & MSC | JOURNALS | ABOUT | CONTACT US Physics of structural colors This article has been downloaded from IOPscience. Please scroll down to see the full text article. 2008 Rep. Prog. Phys. 71 076401 (http://iopscience.iop.org/0034-4885/71/7/076401) The Table of Contents and more related content is available Download details: IP Address: 132.72.138.1 The article was downloaded on 02/07/2008 at 16:04 Please note that terms and conditions apply. IOP PUBLISHING REPORTS ON PROGRESS IN PHYSICS Rep. Prog. Phys. 71 (2008) 076401 (30pp) doi:10.1088/0034-4885/71/7/076401 Physics of structural colors S Kinoshita, S Yoshioka and J Miyazaki Graduate School of Frontier Biosciences, Osaka University, Suita, Osaka 565-0871, Japan E-mail: [email protected] Received 3 September 2007, in final form 16 January 2008 Published 6 June 2008 Online at stacks.iop.org/RoPP/71/076401 Abstract In recent years, structural colors have attracted great attention in a wide variety of research fields. This is because they are originated from complex interaction between light and sophisticated nanostructures generated in the natural world. In addition, their inherent regular structures are one of the most conspicuous examples of non-equilibrium order formation. Structural colors are deeply connected with recent rapidly growing fields of photonics and have been extensively studied to clarify their peculiar optical phenomena. Their mechanisms are, in principle, of a purely physical origin, which differs considerably from the ordinary coloration mechanisms such as in pigments, dyes and metals, where the colors are produced by virtue of the energy consumption of light. -
Pigment Pattern Formation in Zebrafish 443
MICROSCOPY RESEARCH AND TECHNIQUE 58:442–455 (2002) Pigment Pattern Formation in Zebrafish: A Model for Developmental Genetics and the Evolution of Form 1 1,2 IAN K. QUIGLEY AND DAVID M. PARICHY * 1Section of Integrative Biology, University of Texas at Austin, Austin, Texas 78712 2Section of Molecular, Cell and Developmental Biology and Institute for Cellular and Molecular Biology University of Texas at Austin, Austin, Texas 78712 ABSTRACT The zebrafish Danio rerio is an emerging model organism for understanding vertebrate development and genetics. One trait of both historical and recent interest is the pattern formed by neural crest–derived pigment cells, or chromatophores, which include black melano- phores, yellow xanthophores, and iridescent iridophores. In zebrafish, an embryonic and early larval pigment pattern consists of several stripes of melanophores and iridophores, whereas xanthophores are scattered widely over the flank. During metamorphosis, however, this pattern is transformed into that of the adult, which comprises several dark stripes of melanophores and iridophores that alternate with light stripes of xanthophores and iridophores. In this review, we place zebrafish relative to other model and non-model species; we review what is known about the processes of chromatophore specification, differentiation, and morphogenesis during the develop- ment of embryonic and adult pigment patterns, and we address how future studies of zebrafish will likely aid our understanding of human disease and the evolution of form. Microsc. Res. Tech. 58: 442–455, 2002. © 2002 Wiley-Liss, Inc. INTRODUCTION number of genetic mutants have been isolated that To generate the adult body plan, cells must differen- affect pigmentation. For example, a variety of pigment tiate, proliferate, die, and migrate. -
The Biology and Ecology of the Common Cuttlefish (Sepia Officinalis)
Supporting Sustainable Sepia Stocks Report 1: The biology and ecology of the common cuttlefish (Sepia officinalis) Daniel Davies Kathryn Nelson Sussex IFCA 2018 Contents Summary ................................................................................................................................................. 2 Acknowledgements ................................................................................................................................. 2 Introduction ............................................................................................................................................ 3 Biology ..................................................................................................................................................... 3 Physical description ............................................................................................................................ 3 Locomotion and respiration ................................................................................................................ 4 Vision ................................................................................................................................................... 4 Chromatophores ................................................................................................................................. 5 Colour patterns ................................................................................................................................... 5 Ink sac and funnel organ -
Flip Your Lid for Squid!
FLIP YOUR LID FOR SQUID! Adapted from http://njseagrant.org/wp-content/uploads/2014/03/squid_dissection.pdf PURPOSE Students learn the basics of squid anatomy and physiology by conducting a squid dissection. MATERIALS • frozen whole squid—not “clean” and not cut (get whole squid in frozen section of the grocery store) • hand lenses • dissection pan (plate) • scissors • tweezers • probe or toothpick • paper towels PROCEDURE Dissection of External Anatomy • Have students observe their squids for a few moments looking at the relationship between head and the rest of the body. Then ask students why they think squid are in the family of cephalopods (head-foots). • Tentacles and Arms: Have students count the number of arms. They may use the toothpicks to spread out the squid arms. Ask if all the arms look the same? There should be eight short arms and 2 long arms. Explain that the long thin arms with suckers only at the ends are called tentacles. The tentacles large ends with suckers are known as clubs. The tentacles are used to strike out and capture prey. The eight arms are used to hold onto prey when captured and bring food into its mouth. • Suction Cups: Student may use the magnifying lenses to get a closer look at the suction cups on each arm and tentacles. The suction cups have a small-toothed ring around each one and they are on short stalks. The suction cups are like suckers that help the arms hold onto the prey when it is captured and tries to escape. • Beak and Buccal Mass: Located within the circle of arms students can locate the squids mouth which is a beak. -
UNIVERSITY of CALIFORNIA, IRVINE Protonic Conduction and Photochemical Modification of Protein Reflectin THESIS Submitted In
UNIVERSITY OF CALIFORNIA, IRVINE Protonic Conduction and Photochemical Modification of Protein Reflectin THESIS submitted in partial satisfaction of the requirements for the degree of MASTER OF SCIENCE in Chemical and Biochemical Engineering by Yegor Van Dyke Thesis Committee: Professor Alon A. Gorodetsky, Chair Professor Hung D. Nguyen Professor Frank G. Shi 2016 Chapter 1 © 2016 American Chemical Society Chapter 2 © 2016 Gorodetsky Group Chapter 3 © 2016 Yegor Van Dyke TABLE OF CONTENTS LIST OF FIGURES ....................................................................................................................... iii ACKNOWLEDGMENTS ............................................................................................................. vi ABSTRACT OF THE THESIS .................................................................................................... vii CHAPTER 1: Photochemical Doping of Protonic Transistors from a Cephalopod Protein ..................................................................................................................... 1 1.1 Abstract ..................................................................................................................................... 1 1.2 Introduction ………….............................................................................................................. 4 1.3 Experimental Section ................................................................................................................ 5 1.3.1 Preparation of Wild-Type and Mutant Reflectins -
Pollia Condensata Has an Extraordinary Blue Fruit Known for Its High Intensity Reflectivity, and Glittery Appearance
LIVING LIGHT 2018 3 CONTENTS Introduction ....................................................... 3 Scientific commitee ............................................. 4 Local organising commitee ................................... 4 Graphics ............................................................ 4 History .............................................................. 5 Timetable .......................................................... 6 Find us .............................................................11 Abstracts, invited lectures ...................................13 Abstracts, lectures .............................................21 Abstracts, posters ..............................................67 List of participants .............................................92 Contacts...........................................................96 Sponsors ..........................................................97 Notes ...............................................................98 4 5 INTRODUCTION Dear Living Light 2018 Participant, It is an honour for us to host such an exciting meeting in Cambridge and we thank you for joining us! We designed the meeting with the intention of maximising interaction between the participants and with the hope that you will go back home with a new set of collaborators and friends which are as passionate as you are about working at the interface between biology, chemistry, physics, and engineering! We truly hope that you will enjoy the conference and we ask for your collaboration to keep the meeting -
Cephalopod Coloration Model. I. Squid Chromatophores and Iridophores
588 J. Opt. Soc. Am. A/Vol. 25, No. 3/March 2008 Sutherland et al. Cephalopod coloration model. I. Squid chromatophores and iridophores Richard L. Sutherland,1,2,* Lydia M. Mäthger,3 Roger T. Hanlon,3 Augustine M. Urbas,1 and Morley O. Stone1 1Air Force Research Laboratory, 3005 Hobson Way, Wright-Patterson Air Force Base, Ohio 45433-7707, USA 2Science Applications International Corporation, 4031 Colonel Glenn Highway, Dayton, Ohio 45431, USA 3Marine Resources Center, Marine Biological Laboratory, 7 MBL Street, Woods Hole, Massachusetts 02543, USA *Corresponding author: [email protected] Received September 11, 2007; revised November 28, 2007; accepted December 3, 2007; posted December 21, 2007 (Doc. ID 87405); published February 7, 2008 We have developed a mathematical model of skin coloration in cephalopods, a class of aquatic animals. Cepha- lopods utilize neurological and physiological control of various skin components to achieve active camouflage and communication. Specific physical processes of this coloration are identified and modeled, utilizing avail- able biological materials data, to simulate active spectral changes in pigment-bearing organs and structural iridescent cells. Excellent agreement with in vitro measurements of squid skin is obtained. A detailed under- standing of the physical principles underlying cephalopod coloration is expected to yield insights into the be- havioral ecology of these animals. © 2008 Optical Society of America OCIS codes: 000.1430, 050.7330, 160.1435, 240.0310, 260.3160, 330.1690. 1. INTRODUCTION -
The Optical Janus Effect: Asymmetric Structural Color Reflection Materials
The Optical Janus Effect: Asymmetric Structural Color Reflection Materials The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation England, Grant T., Calvin Russell, Elijah Shirman, Theresa Kay, Nicolas Vogel, and Joanna Aizenberg. 2017. “The Optical Janus Effect: Asymmetric Structural Color Reflection Materials.” Advanced Materials 29 (29) (June 6): 1606876. doi:10.1002/adma.201606876. Published Version doi:10.1002/adma.201606876 Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:37235483 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Open Access Policy Articles, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#OAP DOI: 10.1002/ ((please add manuscript number)) Article type: Full Paper The Optical Janus Effect: Asymmetric Structural Color Reflection Materials Grant T. Englanda, Calvin Russella, Elijah Shirmanab, Theresa Kayb, Nicolas Vogelc, and Joanna Aizenberg*abd aJohn A. Paulson School of Engineering and Applied Sciences, Harvard University, Cambridge, USA bWyss Institute for Biologically Inspired Engineering, Harvard University, Cambridge, USA cInstitute of Particle Technology, Friedrich-Alexander University Erlangen-Nürnberg, Cauerstrasse 4, 91058 Erlangen, Germany dDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, USA Keywords: structural color, absorption, multilayer, photonic crystals, thin film. Abstract: Structurally colored materials are often used for their resistance to photobleaching and their complex viewing direction-dependent optical properties. Frequently, absorption has been added to these types of materials in order to improve the color saturation by mitigating the effects of nonspecific scattering that is present in most samples due to imperfect manufacturing procedures. -
A Study of the Chromatophore Pigments in the Skin of the Cephalopod Sepia Officinalis L
Biol. Jb. Dodonaea, 44, 1976, 345-352. A STUDY OF THE CHROMATOPHORE PIGMENTS IN THE SKIN OF THE CEPHALOPOD SEPIA OFFICINALIS L. by C. VAN DEN BRANDEN and W. DECLEIR A b s t r a c t . — In the chromatophores of the dorsal skin of the cuttlefish Sepia officinalis L. at least three different pigments can be found. They belong to the om- mochromes and they differ from each other by their color, solubility and redox behavior. Introduction Cephalopods possess a unique system of chromatophore organs and iridophores which allow very rapid physiological color changes. The iridophores form a layer of immobile reflector cells which is only exposed when the chromatophore cells are absent or fully contracted(H oi.m e s , 1940 and M ir o w , 1972, a). The morphology and structure of the chromatophore organ has been studied in detail(M ir o w , 1972, b - S e r e n i, 1930 -B o y c o t t , 1948). It is composed of a central pigment containing cell, several radially arranged obliquely striated muscle fibers, nerve cells, Schwann cells and sheath cells. The cell bodies of the fibres innervating the chromatophore muscles are concentrated in anterior and posterior chromatophore lobes, which were classified as lower motor centres (B o ycott and Y o u n g , 1950). A possible endocrine regulation of chromatophores has been proposed byK a h r (1958 and 1959). The different color changes and color patterns of cephalopods and the corresponding complex behavioral patterns have been the subject of several studies (W e l l s, 1962 -K u h n , 1950 - H o l m e s , 1940 -S e r e n i, 1930).