1 2 Visual Phototransduction Components in Cephalopod
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The Case of Deirocheline Turtles
bioRxiv preprint doi: https://doi.org/10.1101/556670; this version posted February 21, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Body coloration and mechanisms of colour production in Archelosauria: 2 The case of deirocheline turtles 3 Jindřich Brejcha1,2*†, José Vicente Bataller3, Zuzana Bosáková4, Jan Geryk5, 4 Martina Havlíková4, Karel Kleisner1, Petr Maršík6, Enrique Font7 5 1 Department of Philosophy and History of Science, Faculty of Science, Charles University, Viničná 7, Prague 6 2, 128 00, Czech Republic 7 2 Department of Zoology, Natural History Museum, National Museum, Václavské nám. 68, Prague 1, 110 00, 8 Czech Republic 9 3 Centro de Conservación de Especies Dulceacuícolas de la Comunidad Valenciana. VAERSA-Generalitat 10 Valenciana, El Palmar, València, 46012, Spain. 11 4 Department of Analytical Chemistry, Faculty of Science, Charles University, Hlavova 8, Prague 2, 128 43, 12 Czech Republic 13 5 Department of Biology and Medical Genetics, 2nd Faculty of Medicine, Charles University and University 14 Hospital Motol, V Úvalu 84, 150 06 Prague, Czech Republic 15 6 Department of Food Science, Faculty of Agrobiology, Food, and Natural Resources, Czech University of Life 16 Sciences, Kamýcká 129, Prague 6, 165 00, Czech Republic 17 7 Ethology Lab, Cavanilles Institute of Biodiversity and Evolutionary Biology, University of Valencia, C/ 18 Catedrátic José Beltrán Martinez 2, Paterna, València, 46980, Spain 19 Keywords: Chelonia, Trachemys scripta, Pseudemys concinna, nanostructure, pigments, chromatophores 20 21 Abstract 22 Animal body coloration is a complex trait resulting from the interplay of multiple colour-producing mechanisms. -
Skin Patterning in Octopus Vulgaris and Its Importance for Camouflage
Skin patterning in Octopus vulgaris anditsimportance for camouflage DORSAL ANTERiOR POSTERIOR VENTRAL Wilma Meijer-Kuiper D490 Dqo "Scriptie"entitled: j Skin patterning in Octopus vulgaris and its importance for camouflage Author: Wilma Meijer-Kuiper. Supervisor: Dr. P.J. Geerlink. April, 1993. Cover figure from Wells, 1978. Department of Marine Biology, University of Groningen, Kerklaan 30, 9750 AA Haren, The Netherlands. TABLE OF CONTENTS PAGE Abstract 1 1. Introduction 2 1.1. Camouflage in marine invertebrates 2 1 .2. Cephalopods 2 2. General biology of the octopods 4 2.1. Octopus vulgar/s 4 3. Skin patterning in Octopus 6 3.1. Patterns 6 3.2. Components 8 3.3. Units 9 3.4. Elements 10 3.4.1. Chromatophores 10 3.4.2. Reflector cells and iridophores 16 3.4.3. Leucophores 18 4. The chromatic unit 20 5. Nervous system 22 5.1. Motor units 22 5.2. Electrical stimulation 22 5.3. Projection of nerves on the skin surface 24 5.4. The nervous control system 25 5.5. Neurotransmitters 27 6. Vision in cephalopods, particularly in O.vu!garis 28 6.1. Electro-physiological experiments 28 6.2. Photopigments and receptor cells 28 6.3. Behavioural (training) experiments 29 6.4. Eye movements and optomotor responses 29 7. Camouflage in a colour-blind animal 31 7.1. Matching methods 31 7.2. Countershading reflex 35 8. Conclusive remarks 36 Literature 38 ABSTRACT Camouflage is a method by which animals obtain concealment from other animals by blending in with their environment. Of the cephalopods, the octopods have an extra-ordinary ability to match their surroundings by changing the colour and texture of their skin. -
Shedding New Light on the Generation of the Visual Chromophore PERSPECTIVE Krzysztof Palczewskia,B,C,1 and Philip D
PERSPECTIVE Shedding new light on the generation of the visual chromophore PERSPECTIVE Krzysztof Palczewskia,b,c,1 and Philip D. Kiserb,d Edited by Jeremy Nathans, Johns Hopkins University School of Medicine, Baltimore, MD, and approved July 9, 2020 (received for review May 16, 2020) The visual phototransduction cascade begins with a cis–trans photoisomerization of a retinylidene chro- mophore associated with the visual pigments of rod and cone photoreceptors. Visual opsins release their all-trans-retinal chromophore following photoactivation, which necessitates the existence of pathways that produce 11-cis-retinal for continued formation of visual pigments and sustained vision. Proteins in the retinal pigment epithelium (RPE), a cell layer adjacent to the photoreceptor outer segments, form the well- established “dark” regeneration pathway known as the classical visual cycle. This pathway is sufficient to maintain continuous rod function and support cone photoreceptors as well although its throughput has to be augmented by additional mechanism(s) to maintain pigment levels in the face of high rates of photon capture. Recent studies indicate that the classical visual cycle works together with light-dependent pro- cesses in both the RPE and neural retina to ensure adequate 11-cis-retinal production under natural illu- minances that can span ten orders of magnitude. Further elucidation of the interplay between these complementary systems is fundamental to understanding how cone-mediated vision is sustained in vivo. Here, we describe recent -
Activation and Molecular Recognition of the GPCR Rhodopsin –
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Institutional Repository of the Freie Universität Berlin Activation and molecular recognition of the GPCR rhodopsin – Insights from time-resolved fluorescence depolarization and single molecule experiments Tai-Yang Kim, Thomas Schlieter, Sebastian Haase, and Ulrike Alexiev Physics Department, Freie Universität Berlin, Arnimallee 14, D-14195 Berlin, Germany Correspondence: Dr. Ulrike Alexiev, Physics Department, Freie Universität Berlin, Arnimallee 14, D-14195 Berlin, Germany, Phone: +49-30-838-55157, Fax: +49-30-838-56150, email: [email protected] Keywords: GPCR, visual phototransduction, rhodopsin, GPCR helix 8, protein dynamics, time-resolved fluorescence depolarization, fluorescence anisotropy, surface potential, single particle tracking 1 Abstract The cytoplasmic surface of the G-protein coupled receptor (GPCR) rhodopsin is a key element in membrane receptor activation, molecular recognition by signaling molecules, and receptor deactivation. Understanding of the coupling between conformational changes in the intramembrane domain and the membrane-exposed surface of the photoreceptor rhodopsin is crucial for the elucidation of molecular mechanism in GPCR activation. As little is known about protein dynamics, particularly the conformational dynamics of the cytoplasmic surface elements on the nanoseconds timescale, we utilized time-resolved fluorescence anisotropy experiments and site-directed fluorescence labeling to provide information on both, conformational space and motion. We summarize our recent advances in understanding rhodopsin dynamics and function using time-resolved fluorescence depolarization and single molecule fluorescence experiments, with particular focus on the amphipathic helix 8, lying parallel to the cytoplasmic membrane surface and connecting transmembrane helix 7 with the long C-terminal tail. -
WO 2011/043591 A2 14 April 2011 (14.04.2011) PCT
(12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization International Bureau I (10) International Publication Number (43) International Publication Date WO 2011/043591 A2 14 April 2011 (14.04.2011) PCT (51) International Patent Classification: (81) Designated States (unless otherwise indicated, for every C12N 5/071 (2010.01) C12N 5/02 (2006.01) kind of national protection available): AE, AG, AL, AM, C12N 5/07 (2010.01) AO, AT, AU, AZ, BA, BB, BG, BH, BR, BW, BY, BZ, CA, CH, CL, CN, CO, CR, CU, CZ, DE, DK, DM, DO, (21) Number: International Application DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, GT, PCT/KR20 10/006832 HN, HR, HU, ID, IL, IN, IS, JP, KE, KG, KM, KN, KP, (22) International Filing Date: KZ, LA, LC, LK, LR, LS, LT, LU, LY, MA, MD, ME, 6 October 2010 (06.10.2010) MG, MK, MN, MW, MX, MY, MZ, NA, NG, NI, NO, NZ, OM, PE, PG, PH, PL, PT, RO, RS, RU, SC, SD, SE, (25) Filing Language: English SG, SK, SL, SM, ST, SV, SY, TH, TJ, TM, TN, TR, TT, (26) Publication Language: English TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW. (30) Priority Data: (84) Designated States (unless otherwise indicated, for every 10-2009-0094854 6 October 2009 (06. 10.2009) KR kind of regional protection available): ARIPO (BW, GH, GM, KE, LR, LS, MW, MZ, NA, SD, SL, SZ, TZ, UG, (71) Applicant (for all designated States except US): SNU ZM, ZW), Eurasian (AM, AZ, BY, KG, KZ, MD, RU, TJ, R&DB FOUNDATION [KR/KR]; San 56-1, Sillim- TM), European (AL, AT, BE, BG, CH, CY, CZ, DE, DK, dong, Gwanak-gu, Seoul 15 1-742 (KR). -
Phototransduction Mediated by Melanopsin in Intrinsically Photosensitive Retinal Ganglion Cells
C.A. Domínguez-Solís, J.A. Pérez-León: Phototransduction mediated by melanopsin Contents available at PubMed www.anmm.org.mx PERMANYER Gac Med Mex. 2015;151:709-20 www.permanyer.com GACETA MÉDICA DE MÉXICO REVIEW ARTICLE Phototransduction mediated by melanopsin in intrinsically photosensitive retinal ganglion cells Carlos Augusto Domínguez-Solís and Jorge Alberto Pérez-León* Department of Chemical-Biological Sciences, Institute of Biomedical Sciences, Universidad Autónoma de Ciudad Juárez, Chihuahua, Chih., México Abstract Melanopsin is the most recent photopigment described. As all the other opsins, it attaches in the retina as chromophore. Its amino acid sequence resembles more invertebrate opsins than those of vertebrates. The signal transduction pathway of opsins in vertebrates is based on the coupling to the G protein transducin, triggering a signaling cascade that results in the hyperpolarization of the plasma membrane. On the contrary, the photoreceptors of invertebrates activate the Gq protein pathway, which leads to depolarizing responses. Phototransduction mediated by melanopsin leads to the depolarization of those cells where it is expressed, the intrinsically photosensitive retinal ganglion cells; the cellular messengers and the ion channel type(s) responsible for the cells´ response is still unclear. Studies to elucidate the signaling cascade of melanopsin in heterologous expression systems, in retina and isolated/cultured intrinsically photosensitive retinal ganglion cells, have provided evidence for the involvement of protein Gq and phospholipase C together with the likely participation of an ion channel member of the transient receptor potential-canonical family, a transduction pathway similar to invertebrate photopigments, particularly Drosophila melanogaster. The intrinsically photosensitive retinal ganglion cells are the sole source of retinal inferences to the suprachiasmatic nucleus; thus, clarifying completely the melanopsin signaling pathway will impact the chronobiology field, including the clinical aspects. -
Pigment Pattern Formation in Zebrafish 443
MICROSCOPY RESEARCH AND TECHNIQUE 58:442–455 (2002) Pigment Pattern Formation in Zebrafish: A Model for Developmental Genetics and the Evolution of Form 1 1,2 IAN K. QUIGLEY AND DAVID M. PARICHY * 1Section of Integrative Biology, University of Texas at Austin, Austin, Texas 78712 2Section of Molecular, Cell and Developmental Biology and Institute for Cellular and Molecular Biology University of Texas at Austin, Austin, Texas 78712 ABSTRACT The zebrafish Danio rerio is an emerging model organism for understanding vertebrate development and genetics. One trait of both historical and recent interest is the pattern formed by neural crest–derived pigment cells, or chromatophores, which include black melano- phores, yellow xanthophores, and iridescent iridophores. In zebrafish, an embryonic and early larval pigment pattern consists of several stripes of melanophores and iridophores, whereas xanthophores are scattered widely over the flank. During metamorphosis, however, this pattern is transformed into that of the adult, which comprises several dark stripes of melanophores and iridophores that alternate with light stripes of xanthophores and iridophores. In this review, we place zebrafish relative to other model and non-model species; we review what is known about the processes of chromatophore specification, differentiation, and morphogenesis during the develop- ment of embryonic and adult pigment patterns, and we address how future studies of zebrafish will likely aid our understanding of human disease and the evolution of form. Microsc. Res. Tech. 58: 442–455, 2002. © 2002 Wiley-Liss, Inc. INTRODUCTION number of genetic mutants have been isolated that To generate the adult body plan, cells must differen- affect pigmentation. For example, a variety of pigment tiate, proliferate, die, and migrate. -
This Week in the Journal
The Journal of Neuroscience, February 11, 2004 • 24(6):i • i This Week in The Journal F Cellular/Molecular leaving a “carbohydrate stub” that can still tied to a cue that promises imminent food inhibit axon growth. To overcome this reward. Sensory Signals Barreling into limitation, Grimpe and Silver designed a Cortical Layer 1 DNA enzyme that specifically targets the ࡗ mRNA for xylosyltransferase-1 (XT-1). Neurobiology of Disease Yinghua Zhu and J. Julius Zhu Because XT-1 initiates glycosylation of the (see pages 1272-1279) protein backbone, the DNA enzyme Adenosine as an Immunomodulator Specific sensory input to neocortex arrives should inhibit formation of carbohydrate side chains. Consistent with this hypothe- Shigeki Tsutsui, Jurgen Schnermann, in layer 4, whereas nonspecific input, such Farshid Noorbakhsh, Scot Henry, as information about salience or novelty, sis, the new reagent reduced fully glycosy- is thought to arrive in layer 1. This scheme lated proteoglycans and allowed regener- V. Wee Yong, Brent W. Winston, might imply a slower arrival of inputs to ation of adult sensory neurons past a Kenneth Warren, and Christopher Power layer 1. In this issue, Zhu and Zhu exam- spinal cord stab lesion. (see pages 1521-1529) ine this question using paired whole-cell f Behavioral/Systems/Cognitive As neuroscientists, we generally think of recording in vivo from layer 1 nonpyrami- modulators in terms of their effect on dal cells and the dendrites of the output Dopamine and Food-Seeking in Real neurons or glia. However in the case of pyramidal neurons in layer 5. They mea- Time adenosine, this purine nucleoside also sured the latency of EPSCs evoked by nat- ural stimulation of whiskers. -
Time-Series Plasma Cell-Free DNA Analysis Reveals Disease Severity of COVID-19 Patients
medRxiv preprint doi: https://doi.org/10.1101/2020.06.08.20124305; this version posted June 9, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted medRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license . Time-series plasma cell-free DNA analysis reveals disease severity of COVID- 19 patients Authors: Xinping Chen1†, Yu Lin2†, Tao Wu1†, Jinjin Xu2†, Zhichao Ma1†, Kun Sun2,5†, Hui Li1†, Yuxue Luo2,3†, Chen Zhang1, Fang Chen2, Jiao Wang1, Tingyu Kuo2,4, Xiaojuan Li1, Chunyu Geng2, Feng Lin1, Chaojie Huang2, Junjie Hu1, Jianhua Yin2, Ming Liu1, Ye Tao2, Jiye Zhang1, Rijing Ou2, Furong Xiao1, Huanming Yang2,6, Jian Wang2,6, Xun Xu2,7, Shengmiao Fu1*, Xin Jin2,3*, Hongyan Jiang1*, Ruoyan Chen2* Affiliations: 1Hainan General Hospital, Hainan Affiliated Hospital of Hainan Medical University, Hainan Provincial Key Laboratory of Cell and Molecular Genetic Translational Medicine, Haikou 570311, Hainan, China. 2BGI-Shenzhen, Shenzhen, 518083, Guangdong, China 3School of Medicine, South China University of Technology, Guangzhou 510006, Guangdong, China 4BGI Education Center, University of Chinese Academy of Sciences, Shenzhen 518083, Guangdong, China 5Shenzhen Bay Laboratory, Shenzhen 518132, Guangdong, China 6James D. Watson Institute of Genome Sciences, Hangzhou 310058, China 7Guangdong Provincial Key Laboratory of Genome Read and Write, BGI-Shenzhen, Shenzhen, 518120, China *Correspondence to: [email protected]; [email protected]; [email protected]; [email protected]. †These authors contributed equally to this work. Abstract: Clinical symptoms of coronavirus disease 2019 (COVID-19) range from asymptomatic to severe pneumonia and death. -
The Biology and Ecology of the Common Cuttlefish (Sepia Officinalis)
Supporting Sustainable Sepia Stocks Report 1: The biology and ecology of the common cuttlefish (Sepia officinalis) Daniel Davies Kathryn Nelson Sussex IFCA 2018 Contents Summary ................................................................................................................................................. 2 Acknowledgements ................................................................................................................................. 2 Introduction ............................................................................................................................................ 3 Biology ..................................................................................................................................................... 3 Physical description ............................................................................................................................ 3 Locomotion and respiration ................................................................................................................ 4 Vision ................................................................................................................................................... 4 Chromatophores ................................................................................................................................. 5 Colour patterns ................................................................................................................................... 5 Ink sac and funnel organ -
Flip Your Lid for Squid!
FLIP YOUR LID FOR SQUID! Adapted from http://njseagrant.org/wp-content/uploads/2014/03/squid_dissection.pdf PURPOSE Students learn the basics of squid anatomy and physiology by conducting a squid dissection. MATERIALS • frozen whole squid—not “clean” and not cut (get whole squid in frozen section of the grocery store) • hand lenses • dissection pan (plate) • scissors • tweezers • probe or toothpick • paper towels PROCEDURE Dissection of External Anatomy • Have students observe their squids for a few moments looking at the relationship between head and the rest of the body. Then ask students why they think squid are in the family of cephalopods (head-foots). • Tentacles and Arms: Have students count the number of arms. They may use the toothpicks to spread out the squid arms. Ask if all the arms look the same? There should be eight short arms and 2 long arms. Explain that the long thin arms with suckers only at the ends are called tentacles. The tentacles large ends with suckers are known as clubs. The tentacles are used to strike out and capture prey. The eight arms are used to hold onto prey when captured and bring food into its mouth. • Suction Cups: Student may use the magnifying lenses to get a closer look at the suction cups on each arm and tentacles. The suction cups have a small-toothed ring around each one and they are on short stalks. The suction cups are like suckers that help the arms hold onto the prey when it is captured and tries to escape. • Beak and Buccal Mass: Located within the circle of arms students can locate the squids mouth which is a beak. -
Cephalopod Coloration Model. I. Squid Chromatophores and Iridophores
588 J. Opt. Soc. Am. A/Vol. 25, No. 3/March 2008 Sutherland et al. Cephalopod coloration model. I. Squid chromatophores and iridophores Richard L. Sutherland,1,2,* Lydia M. Mäthger,3 Roger T. Hanlon,3 Augustine M. Urbas,1 and Morley O. Stone1 1Air Force Research Laboratory, 3005 Hobson Way, Wright-Patterson Air Force Base, Ohio 45433-7707, USA 2Science Applications International Corporation, 4031 Colonel Glenn Highway, Dayton, Ohio 45431, USA 3Marine Resources Center, Marine Biological Laboratory, 7 MBL Street, Woods Hole, Massachusetts 02543, USA *Corresponding author: [email protected] Received September 11, 2007; revised November 28, 2007; accepted December 3, 2007; posted December 21, 2007 (Doc. ID 87405); published February 7, 2008 We have developed a mathematical model of skin coloration in cephalopods, a class of aquatic animals. Cepha- lopods utilize neurological and physiological control of various skin components to achieve active camouflage and communication. Specific physical processes of this coloration are identified and modeled, utilizing avail- able biological materials data, to simulate active spectral changes in pigment-bearing organs and structural iridescent cells. Excellent agreement with in vitro measurements of squid skin is obtained. A detailed under- standing of the physical principles underlying cephalopod coloration is expected to yield insights into the be- havioral ecology of these animals. © 2008 Optical Society of America OCIS codes: 000.1430, 050.7330, 160.1435, 240.0310, 260.3160, 330.1690. 1. INTRODUCTION