RP11-143M4 110L5 RP11-379D19 RP11-110H20 RP11-36J16 RP11-423H11 RP11-234J24 RP5-890E16 RP11-510P20 RP11-79O18 RP11-9M20 RP11-436J4 97H8 184L7 RP3-452O8 RP11-266I24 RP11-29C11 RP11-268H17 RP11-89A22 RP11-241H2 P1 RP11-58O9 265E19 RP11-513C18 RP11-38L14 RP11-87N6 59G17 RP11-749I16 CTD-2251j22 Neu4-béa Neu1-béa D152 19107 19108 201L4 56K13 RP11-19G24 RP11-81D5 RP11-58O8 RP11-252N11 RP11-294G4 RP11-521P1 RP11-490L18 RP11-90A23 RP11-451O17 RP11-79O9 RP11-525H19 P1 .9 RP11-451O6 RP11-398A1 RP11-73F15 RP11-100L12 RP11-88B16 RP11-405P10 RP11-363P3 RP11-79O4 RP11-160E2 RP11-525O11 RP11-404D6 RP11-459E6 RP11-273K13 RP11-90G21 RP11-89F21 RP11-42F12 RP11-89K6 RP11-746E8 RP11-385G5 RP11-55C13 RP11-383G9 RP11-89A15 RP11-89D11 RP11-9A21 RP11-61B20 RP11-457I18 RP11-4F24 RP11-459C13 RP11-545O6 RP11-587F22 RP11-582C6 RP11-135N5 RP11-380H7 RP11-357O7 RP11-294J5 RP11-26N16 RP11-91C8 RP11-61B16 Clone name Table S1 Orsetti etal. 610
Mb position
49,84 49,53 48,82 46,47 46,41 45,60 44,70 44,60 44,27 44,13 42,67 41,36 40,68 40,67 40,66 40,55 38,98 38,42 38,17 38,04 38,03 37,98 37,98 37,88 37,87 37,83 37,82 37,77 37,57 37,36 37,36 37,29 37,07 37,02 36,53 36,48 34,74 34,48 33,55 33,09 33,00 32,31 31,55 31,44 30,36 29,92 29,81 29,61 29,36 29,17 28,91 28,16 27,80 20,68 20,14 19,87 19,20 17,75 16,53 16,09 15,83 15,65 15,35 14,48 13,36 12,76 11,46 ucsc freeze june 8,67 8,67 8,54 7,81 7,78 7,13 5,47 4,45 4,08 3,82 3,56 3,18 2,69 2,46 2,14 1,28 0,89 0,65 0,49 2002 17q21,31-17q21,32 17p13,3-17p13,2 17p12-17p11,2
CytoBand ucsc
17q21,33 17q21,33 17q21,32 17q21,32 17q21,32 17q21,32 17q21,32 17q21,31 17q21,31 17q21,31 17q21,31 17q21,31 17q21,31 freeze june 17p13.1 17p13.1 17p13.1 17p13,2 17p13,2 17p13,3 17p13,3 17p13,3 17p13,3 17p13,3 17p13,3 17p13,3 17p13,3 17p13,3 17q23,3 17q21,2 17q21,2 17q21,2 17q21,2 17q21,2 17q21,2 17q21,2 17q21,2 17q21,2 17q21,1 17q21,1 17q21,1 17q11,2 17q11,2 17q11,2 17q11,2 17q11,2 17q11,2 17q11,2 17q11,2 17q11,2 17q11,2 17q11,2 17q11,2 17p11,2 17p11,2 17p11,2 17p11,2 17p11,2 17p11,2 17p13,1 17p13,1 17p13.1 17p13 17q22 17q12 17q12 17q12 17q12 17q12 17q12 17q12 17q12 17q12 17q12 17q12 17q12 17q12 17p12 17p12 17p12 17p12 17p12 17p12 17p12 2002 EFNB3/ KRT19/ SP2/FLJ10535/MGC11242/CDK5RAP3/LOC51226/NFE2L1/CBX1/SNX11/SCAP1 ALDH3A1/ULK2/AKAP10/FLJ11800/DKFZp434F1819/PMI/DKFZp5660O84 ATP1B2/ KRT14/ KRTHA6/ SHBG/ SOX15/FXR2/SSAT2/SHBG/ATP1B2/EFNB3/FLJ10385/TP53 LIG3/LOC117584/RAD51L3/DKFZp434H2215/FLJ10458/ GEMIN4/FLJ10979/FLJ22282/LOC51031/FLJ20435/NXN FXR2/ LIG3/LOC117584/RAD51L3/DKFZp434H2215/FLJ10458 KRT13/ SL15/ KRT15/KRTHA6/A5/A2/A8/A7/A1/A4/3B/3A GEMIN4/LOC51031/FLJ10581/FLJ20435/NXN IMP1/ ITGAE/GSG2/HSA277841/DKFZp761M0423 CD68/SENP3/SSAT2/SOX15/MPDU1/EIF4A1
LOC201158/LOC51030/C17orf1A/TRIM16 Gene or marker
RAB5EP/NUP88/MGC4189/C1QBP/DDX33 content GIP/ C17ORF1A/ EAP30/ NME1/NME2/FLJ20055/LOC51096 HAIK1/KAP3,3/KRTAP3,2/3,1/1,5 DPH2L1/OVCA2/HIC1/c17orf31 MGC13061/CENTA2/FLJ22729 ADORA2B/FLJ20343/NCOR1 MEOX1/SOST/DUSP3/MPP3 BECN1/MGC2744// ATP5G1/NDP52/FLJ13855 RPA1/ EBBP/ PEX12/D17S1669/APPB1 ALOX12/ WI-7901/RPL26/NUDEL SCYA6/SCYA13/SCYA1 GRAP/D17S1286/EPN2 LOC56934/D17S2122 PAFAH1B1/D17S2111 SHMT1/ULK2/AKAP10 WNT3/WNT15/GOSR2 MYL4/ SMCR5/RAI1/SREBF1 FLJ20261/SMARCE1 CREME9/SHGC-3743 PMI/DKFZp5660O84 DPH2L1/D17S2106 E2-EFP/ D17S1979/THRA RARA/FLJ14950 TOP2A/ ASGR1/ SLC6A4/ ITGB3/ TCF11, TIMM22/ABR CRK/YWHAE sts-H97559 UBB/TRPV2 MGC11316 D17S1323 D17S1984 NSF/WNT3 D17S1281 KIAA0399 LHX1/DED FLJ14950 D17S921 RH92507 D17S809 D17S950 ZNF207 PPARBP PPARBP NPEPPS ACACA ITGBP4 MLN51 MLN64 ACCN1 TOP2A BRCA1 ASGR2 LASP1 BECN1 LASP1 ERBB2 ERBB2 RPL27 ITGB3 RARA BLMH RNU2 GRB7 MNT NF1
RP11-131C4 49,90 17q22 LOC56934/D17S788 RP11-42M14 50,23 17q22 D17S2136 RP11-372K20 52,23 17q22 D17S790 110D21 53,01 17q22 HLF RP11-515O17 53,07 17q22 HLF RP11-515E23 53,17 17q22 MMD 215L21 53,44 17q23,1 D17S1607 RP11-524I12 53,48 17q23,1-17q23,2 PCTP RP11-550K23 53,49 17q23,2 FLJ10970/PCTP RP11-670E13 54,63 17q23,2 DGKE/ZNF147 RP5-1107A17 55,11 17q23,2 D17S957 RP11-118E18 55,19 17q23,2 RP11-343K8 55,61 17q23,2 MRPS23/FLJ20739 RP11-506H21 55,80 17q23,2 LPO/FLJ20345/EPX RP5-1171I10 56,08 17q23,2 MPO RP5-1081P3 56,71 17q23,2 WI-6857/MUL RP11-329E11 56,92 17q23,2 stSG39547 RP11-481M4 57,05 17q23,2 FLJ22060 RP11-118K23 57,39 17q23,2 CLTC RP11-521F6 57,55 17q23,2 CA4/APPBP2 92E7 57,73 17q23,2 D17S1604 RP11-178C3 57,82 17q23,2 RP6KB1 23E14 59,20 17q23,2 D17S1855 RP1-210A19 59,23 17q23,2 TXB2 RP11-332H18 59,23 17q23,2 TBX2 RP11-15K2 59,27 17q23,2 TBX4 RP11-180P8 60,34 17q23,2 RP11-156L14 60,37 17q23,2 D17S794 RP11-269G24 61,16 17q23,2 CYB561 RP11-548G14 61,22 17q23,2 RP11-214C8 61,63 17q23,3 GH1/ICAM2 RP11-89H15 61,66 17q23,3 HT008 176P24 61,94 17q23,3 PECAM1 RP11-557B23 62,34 17q23,3 FALZ/DKFZ586L0724/RDGBB RP11-304E2 62,52 17q23,3-17q24,1 RDGBB RP11-299G24 63,11 17q24,1 PRKCA RP11-349A8 63,18 17q24,1 CACNG1/CGCNG4 RP11-52B5 63,29 17q24,1 KIAA0054=HUMORF5/D17S807 208L20 63,46 17q24,1 D17S807 RP11-74H8 63,50 17q24,1 PRKCA RP11-4F22 63,88 17q24,2 PRKCA P0135 64,83 17q24,3 AXIN2 RP11-489G5 65,17 17q24,1 stSG9582 RP11-81D7 65,64 17q24,1 RP11-387O17 66,07 17q24,2 KIAA1001/FLJ10055/PRKAR1A RP11-62F10 66,23 17q24,2 PRKAR1A RP11-79K13 66,61 17q24,2 RP11-293K20 66,78 17q24,2 ABCA6/ABCA10 RP11-300G13 67,68 17q24,3 stSG22227 RP11-90L11 68,13 17q24,3 RP11-84E24 69,66 17q24,3 SOX9 RP11-65C22 70,31 17q24,3 D17S1351/c17orf26 RP11-387C17 70,48 17q24,3-17q25,1 R10736 RP11-319A23 70,99 17q25,1 A004R48/COG1 RP11-41E12 71,00 17q25,1 FLJ14775/CEP4/KIAA1514/FLJ20721 RP11-91O17 72,19 17q25,1 DNAI2 RP11-225G19 72,48 17q25,1 CMRF35 RP11-89J11 72,72 17q25,1 FLJ20255/GRIN2C/FDXR/ATP5H/ICT1 RP11-399J11 72,77 17q25,1 A002D35/GRIN2C/FDXR RP11-145C11 72,99 17q25,1 KIAA0176/SLC16A5 RP11-76G4 73,08 17q25,1 GRB2/D17S820E/FLJ12549/GGA3/MRPS7/AD023/SLC25A19/FLJ20886/ACOX1 RP1-171G12 73,24 17q25,1 GRB2 RP11-379P18 73,66 17q25,1 ITGb4 105A14 73,92 17q25,1 CDK3 RP11-89B11 74,06 17q25,1 PRPSAP1 282L16 74,16 17q25,1 D17S785 RP11-318A15 74,27 17q25,1 AANAT/SFRS2/STHM RP11-526M7 74,32 17q25,1 ST6GaINAcI/SFRS2/ET RP11-141D15 75,85 17q25,3 TK1/SYNGR2/BIRC5 RP11-26B13 76,29 17q25,3 RP11-79L19 76,48 17q25,3 KIAA1453 RP11-537M14 76,61 17q25,3 SHAPY/LGALS3BP RP11-128J1 76,87 17q25,3 RP11-46E14 77,25 17q25,3 CBX4/ RC1/D17S784/MGC10561/CBX8/GAA/FLJ20753 93J11 77,63 17q25,3 D17S784 RP11-160F4 77,81 17q25,3 RP11-561K8 77,96 17q25,3 RP11-455O6 78,38 17q25,3 stSG9053 RP11-467J3 78,99 17q25,3 RH45324 RP11-165M24 79,32 17q25,3 RP1-53N20 17q22 (home FISH) BCL5 RP11-504F22 17q22-17q23,1 RP11-545P13 RP11-847E16 17p13.3 RP11-89P18 17q21 (home FISH) RP11-91M1 17q25,3 RP11-469C13 76,52 17q25,3 Cda13g07 Orsetti et al. Table S2
Bp position : ucsc CytoBand : ucsc Bp position : ucsc CytoBand : ucsc GENE name GENE name freeze june 2002 freezejune 2002 freeze june 2002 freezejune 2002 UBE2G 04493299-04528433 17p13 MKP-L (DUSP14) 35255731-35279323 17q12 NOS2A 25939800-25983524 17q11.2 AP1GBP1 35284735-35375173 17q12 NOS2A 25939800-25983524 17q11.2 ROK1 35378884-35409201 17q12 PYY2 26408807-26410059 17q11.2 TCF2 35452160-35510785 17q12 PPY2 26429437-26430283 17q11.2 MLLT6 36347477-36367443 17q12 MAC 30 26501193-26510213 17q11.2 ZNF144 36376124-36388473 17q12 TNFAIP1 26517814-26529001 17q11.2 PSMB3 36394593-36406070 17q12 DKFZP586F1524 26529174-26539474 17q11.2 PIP5K2B 36409527-36441750 17q12 VTN 26549272-26552272 17q11.2 RPL23 36491941-36495595 17q12 KIAA0524 (SARM) 26554093-26583033 17q11.2 LASP1 36529854-36581558 17q12 UNC 119 26718897-26724802 17q11.2 TEM7 36723090-36811307 17q12 DEEPEST 26749780-26771470 17q11.2 CACNB1 36833240-36857436 17q12 KIAA0100 26786900-26816844 17q11.2 CACNB1 36833240-36857436 17q12 SDF2 26820779-26834106 17q11.2 RPL19 36860105-36864515 17q12 RPL23A 26892705-26896662 17q11.2 TRIP3 37043716-37052820 17q21 FLJ10700 26928858-26996470 17q11.2 PPARBP 37066388-37111066 17q12 FLOT2 27051658-27069945 17q11.2 CrkRS 37121574-37188208 17q12 TIAF1 27420504-27483840 17q11.2 PPP1R1B (DARPP32) 37283120-37289786 17q12 PIPOX 27500144-27500585 17q11.2 MLN64 37292846-37319201 17q12 PIPOX/SCAMP2 27500144-27500585 17q11.2 ERBB2 37355863-37384391 17q12 GIT1 27560454-27576370 17q11.2 PRO2521 37430265-37444416 17q12 SLC6A4 28278382-28302500 17q11.2 GRB7 37569442-37578773 17q12 BLMH 28328675-28372393 17q11.2 KIAA0130 37619792-37624097 17q21.1 CPD 28459155-28546609 17q11.2 CSF3 37625381-37627751 17q21.1 GOSR1 28557596-28602798 17q11.2 MLN51 37765209-37779306 17q21.1 FLJ10120 28971716-29004074 17q11.2 THRA 37816744-37845501 17q21.1 HCA66 29084568-29122520 17q11.2 NR1D1 37844421-37852355 17q21.1 CREME9 29215318-29840209 17q11 CDC6 37939552-37954704 17q21.2 CREME9 29215318-29840209 17q11 CDC6 37939552-37954705 17q21.2 NF1 29610652-29889947 17q11.2 RARA 37961138-38012625 17q21.2 EVI2A 29663407-29667438 17q11.2 TOP2A 38045208-38073667 17q21.2 EVI2B 29671023-29681313 17q11.2 IGFBP4 38099553-38113665 17q21.2 OMG 29687547-29690510 17q11.2 CCR7 38210312-38221982 17q21.2 HSA272195 (CENTA2) 30025756-30063029 17q11.2 CCR7 38210312-38221982 17q21.2 FLJ11040 30275051-30317955 17q11.2 SMARCE1 38285228-38304358 17q21.2 ZNF207 30443855-30464159 17q11.2 KRT10 38474610-38479082 17q21.2 PSMD11 30538221-30574732 17q11.2 KRT20 38532465-38541442 17q21.2 CDK5R1 30581248-30582330 17q11.2 DKFZP434G032 (HAIK1) 38579211-38594096 17q21.2 KIAA0727 (MYO1D) 30586318-30869351 17q11.2 KRT14 38859634-38864236 17q21.2 DKFZP564K1964 31028306-31041796 17q11.2 KRTHA3A 39086879-39091564 17q21.2 NME1 31298019-31312916 17q11.2 KRTHA1 39134483-39138352 17q21.2 SCYA2 32351990-32353909 17q11.2 KRTHA2 39200567-39207982 17q21.2 SCYA7 32366930-32368947 17q11.2 KRT13 39241737-39246354 17q21.2 SCYA7 32366930-32368947 17q11.2 KRT15 39254502-39259645 17q21.2 SCYA11 32382465-32384890 17q11.2 KRT19 39264373-39269057 17q21.2 SCYA8 32415756-32418112 17q11.2 KRT16 39284570-39287490 17q21.2 SCYA13 32453157-32455314 17q11.2 JUP 39465596-39497955 17q21.2 SCYA13 32453157-32455314 17q11.2 SC65 39513218-39524003 17q21.2 SCYA1 32457085-32459898 17q11.2 FLJ10572 39566234-39578081 17q21.2 CCT6B 33024991-33058508 17q12 FLJ10572 39566234-39578082 17q21.2 LIG3 33077638-33101876 17q12 ACLY 39579631-39631756 17q21.2 RAD51L3 33197452-33216798 17q12 TTC2 39682299-39723295 17q21.2 DKFZp434H2215 33218731-33227796 17q12 GCN5L2 39819036-39827252 17q21.2 FLJ10458 33228420-33239359 17q12 RAB5C 39830902-39863770 17q21.2 FLJ10458 33228420-33239360 17q12 STAT5B 39960502-40026777 17q21.2 FLJ10260 33508107-33529539 17q12 STAT5A 39988086-40029214 17q21.2 PEX12 33671834-33675594 17q12 STAT3 40032144-40105859 17q21.2 AP2B1 33684312-33823448 17q12 PTRF 40194164-40197002 17q21.2 TAF2N(taf15) 33906508-33944258 17q12 NAGLU 40212439-40220721 17q21.2 SCYA5 33968546-33977350 17q12 HSD17B1 40269123-40271414 17q21.2 LOC57151 34031545-34036530 17q12 MLX(TCFL4) 40283280-40289448 17q21.2 SCYA16 34073557-34078552 17q12 NRXN4 40350410-40422014 17q21.2 SCYA14 34080711-34098606 17q12 TUBG1 40369221-40374780 17q21.2 SCYA15 34080711-34098606 17q12 TUBG2 40390227-40397943 17q21.2 SCYA23 34110117-34115025 17q12 EZH1 40422469-40454404 17q21.2 SCYA18 34161662-34168861 17q12 RAMP2 40484705-40486595 17q21.2 SCYA18 34161662-34168861 17q12 G6PC 40566025-40578622 17q21.31 SCYA3 34185621-34187484 17q12 AOC3 40621328-40628273 17q21.31 SCYA4 34201087-34202882 17q12 BECN1 40655199-40665527 17q21.31 DED 34690453-34798332 17q12 RPL27 40721134-40726246 17q21.31 ACACA 34828446-35071535 17q12 NBR2 41024067-41043572 17q21.31 Bp position : ucsc CytoBand : ucsc Bp position : ucsc CytoBand : ucsc GENE name GENE name freeze june 2002 freezejune 2002 freeze june 2002 freezejune 2002 M17S2 41068941-41110147 17q21.31 FLJ20694 48551527-48558012 17q21.33 ARF4L 41240983-41242915 17q21.31 TOB1 48653351-48654546 17q21.33 DDX8 41326219-41350786 17q21.31 NME2 48956944-48962237 17q21.33 ETV4 41415610-41425521 17q21.31 CA10 49420806-49950501 17q21.33 MEOX1 41459697-41480872 17q21.31 LOC56934 49952569- 17 DUSP3 41587614-41598280 17q21.31 TOM1L1 52708811-52770009 17q22 MPP3 41620107-41651551 17q21.31 COX11 52759961-52776713 17q22 MPP2 41694667-41726830 17q21.31 HLF 53073225-53131591 17q22 PPY 41760113-41760964 17q21.31 MMD 53200672-53229822 17q22 UBTF 42026411-42038852 17q21.31 FLJ10970 53531585-53534738 17q23.1 SLC4A1 42068967-42087395 17q21.31 PCTP 53563001-53589318 17q23.1 RPIP8 42127708-42137966 17q21.31 NOG 54405184-54405882 17q23.2 GRN 42164416-42172398 17q21.31 DGKE 54648819-54678190 17q23.2 ITGA2B 42191478-42208801 17q21.31 DGKE 54648819-54678191 17q23.2 FZD2 42290787-42292714 17q21.31 COIL 54752823-54775663 17q23.2 GJA7 42400632-42401822 17q21.31 AKAP1 54899920-54935870 17q23.2 CLST11240 42444084-42446460 17q21.31 FLJ20739 55686177-55777565 17q23.2 U5-116KD 42446478-42495441 17q21.31 FLJ20739 55686177-55777566 17q23.2 GFAP 42501652-42511529 17q21.31 ZNF161 55796051-55810451 17q23.2 NMT1 42667176-42714604 17q21.31 SFRS1 55825798-55829476 17q23.2 HIS1 42789358-42792962 17q21.31 EPX 56014621-56026753 17q23.2 C17orf1B 42849376-42854356 17q21.31 FLJ20345 56027028-56037833 17q23.2 MAP3K14 42870163-42898009 17q21.31 MPO 56091427-56102508 17q23.2 KIAA0356 43041084-43096042 17q21.31 PRAX-1 56122817-56149704 17q23.2 CRHR1 43455875-43507400 17q21.31 SUPT4H1 56166764-56173789 17q23.2 MAPT 43566223-43696064 17q21.31 FLJ20315 56175262-56237323 17q23.2 NSF 44205944-44333113 17q21.31 FLJ20315 56175262-56237324 17q23.2 GOSR2 44498391-44516025 17q21.32 PNUTL2 56341842-56353637 17q23.2 KIIA0563 44590602-44596011 17q21.32 RAD51C 56517886-56559615 17q23.2 CDC27 44695432-44764486 17q21.32 KIAA1072 56581154-56808949 17q23.2 MYL4 44784337-44802936 17q21.32 FLJ11029 56995092-57014815 17q23.2 ITGB3 44829092-44898378 17q21.32 FLJ10587 57020152-57025376 17q23.2 NPEPPS 45314247-45406166 17q21.32 CLTC 57433676-57508480 17q23.2 KPNB1 45432815-45466539 17q21.32 PRO0456 57443786-57445702 17q23.2 KIAA0775 45478170-45494957 17q21.32 LOC51651 57511022-57521212 17q23.2 TBX21 45516150-45529026 17q21.32 CA4 57703210-57712766 17q23.2 SP2 45680514-45711862 17q21.32 RPS6KB1 57819125-57873488 17q23.2 FLJ10535 45724477-45731195 17q21.32 APPBP2 58261324-58340302 17q23.2 NFE2L1 45831298-45844408 17q21.32 PPM1D 58414297-58530650 17q23.2 CBX1 45852980-45884374 17q21.32 FLJ20128 58649226-59234062 17q23.2 CBX2 45852980-45884374 17 TBX2 59241382-59249850 17q23.2 SNX11 45890486-45905672 17q21.32 TBX4 59297669-59325527 17q23.2 SKAP55 45916372-46213156 17q21.32 TRAP240 59786909-59906825 17q23.2 HOXB2 46331186-46333469 17q21.32 KIAA0709 60322551-60421915 17q23.2 HOXB5 46379758-46382464 17q21.32 DKFZP564D166 60845647-61126828 17q23.2 HOXB6 46384307-46387221 17q21.32 CYB561 61161425-61174677 17q23.2 HOXB7 46395738-46399523 17q21.32 ACE 61205448-61225819 17q23.2 HOXB13 46514889-46517166 17q21.32 MAP3K3 61350510-61422015 17q23.2 NDP52 46559566-46652458 17q21.32 GK001 61473118-61501445 17q23.3 ATP5G1 46682974-46686050 17q21.32 RNAHP 61514933-61547186 17q23.3 EAP30 46720570-46734980 17q21.32 FLJ20062 61547301-61553465 17q23.3 NESH 46998665-47011664 17q21.32 PSMC5 61555327-61559888 17q23.3 PHB 47193274-47203307 17q21.33 SMARCD2 61560621-61570860 17q23.3 NGFR 47283744-47303439 17q21.33 CSH2 61599884-61601507 17q23.3 NXPH3 47367081-47372275 17q21.33 GH2 61615449-61617101 17q23.3 SPOP 47388449-47466495 17q21.33 CSH1 61631972-61633585 17q23.3 UGTREL1 47489771-47496378 17q21.33 GH1 61631972-61633585 17q23.3 HBOA 47577143-47617544 17q21.33 CD79B 61643510-61647124 17q23.3 DLX4 47761041-47762871 17q21.33 SCN4A 61653323-61687715 17q23.3 DLX3 47778636-47783500 17q21.33 ICAM2 61717374-61721526 17q23.3 DLX3 47778636-47783501 17q21.33 ICAM2 61717374-61721526 17q23.3 SGCA 47841156-47856749 17q21.33 PECAM1 61945894-61946123 17q23.3 COL1A1 47864108-47882452 17q21.33 PECAM1 61945894-61946123 17q23.3 ITGA3 47940737-47976651 17q21.33 CACNG5 62252497-62254714 17q23.3 PDK2 47981557-47997228 17q21.33 CACNG5 62252497-62254715 17q23.3 PRO1855 48171731-48188047 17q21.33 BRCA1 62255578-62335273 17q23.3 CHAD 48255269-48259359 17q21.33 RHO7 62352266-62355599 17q23.3 FLJ11164 48269322-48276469 17q21.33 VATI 62358560-62366930 17q23.3 CACNA1G 48351737-48417618 17q21.33 IFI35 62367078-62368490 17q23.3 ABCC3 48480015-48482593 17q21.33 FALZ 62415489-62493223 17q23.3 OA48-18 48510096-48543203 17q21.33 DKFZP586L0724 62575195-62601293 17q23.3 Bp position : ucsc CytoBand : ucsc Bp position : ucsc CytoBand : ucsc GENE name GENE name freeze june 2002 freezejune 2002 freeze june 2002 freezejune 2002 KIAA0054 (HELZ) 63140494-63341040 17q24.1 PYCR1 79270891-79275583 17q25.3 CACNG1 63362197-63374401 17q24.1 GCGR 79285177-79303438 17q25.3 CACNG4 63387986-63454096 17q24.1 ARHGDIA 79317130-79321066 17q25.3 PRKCA 63614750-64114513 17q24.1 PCYT2 79354168-79360721 17q25.3 AXIN2 64858591-64887775 17q24.1 RAC3 79412830-79415453 17q25.3 RGS9 65188656-65278934 17q24.1 RFNG 79429154-79431808 17q25.3 KPNA2 65608066-65617023 17q24.1 RFNG 79429154-79431808 17q25.3 POLG2 65809811-65874228 17q24.2 GPS1 79433162-79438738 17q25.3 DDX5 65876811-65883484 17q24.2 FASN 79459602-79479491 17q25.3 SLC16A6 66068625-66083128 17q24.2 ILF1 79551047-79751027 17q25.3 KIAA1001 66107458-66230211 17q24.2 NARF 79555330-79633118 17q25.3 FLJ10055 66230633-66266847 17q24.2 LOC56270 79663390-79714786 17q25.3 PRKAR1A 66304550-66324342 17q24.2 SEC4L 79683562-79774491 17q25.3 ABCA8 66662403-66750463 17q24.2 TBCD 79837106-80034951 17q25.3 ABCA6 66873818-66936986 17q24.2 KIAA0195 17 ABCA5 67042581-67122258 17q24.3 LOC51701 17 MAP2K6 67254075-67293666 17q24.3 LOC51747 17 KCNJ16 67826931-67887255 17q24.3 PDE6G 17q25 KCNJ2 67921181-67931691 17q24.3 PRO2543 17 SOX9 69873549-69878937 17q24.3 RPML12 17q25 SSTR2 71050926-71053495 17q25.1 SPHK1 17q25 FLJ20721 71117987-71318577 17q25.1 FLJ10832 71133273-71279164 17q25.1 RPL38 72221522-72227691 17q25.1 CMRF35 72514532-72519119 17q25.1 IRC1 72575824-72594208 17q25.1 SLC9A3R1 72760835-72781560 17q25.1 DKFZP564C103 72782753-72788538 17q25.1 FLJ20255 72788706-72851958 17q25.1 FDXR 72875132-72885610 17q25.1 KIAA0176 73068800-73087366 17q25.1 SMT3H2 73161097-73176005 17q25.1 AD023 73259304-73264299 17q25.1 GRB2 73313175-73398819 17q25.1 LLGL2 73523022-73542161 17q25.1 RECQL5 73593763-73634086 17q25.1 HCNGP 73634285-73681724 17q25.1 ITGB4 73695143-73730168 17q25.1 H3F3A 73750620-73752134 17q25.1 WBP2 73818122-73827758 17q25.1 SRP68 73853819-73888378 17q25.1 EVPL 73900189-73920672 17q25.1 CDK3 73921942-73926181 17q25.1 ACOX1 73948170-73969550 17q25.1 FOXJ1 73990919-73994977 17q25.1 PRPSAP1 74165521-74208462 17q25.1 STHM 74395128-74415597 17q25.1 SFRS2 74566601-74608427 17q25.1 SEC14L1 74969895-75065171 17q25.3 MSF 75165399-75310701 17q25.3 LAK-4P 75932362-75943490 17q25.3 SYNGR2 75988409-75992834 17q25.3 TK1 75994005-76140593 17q25.3 BIRC5 76124977-76135412 17q25.3 SSI-3 76194428-76195278 17q25.3 DNAH17 76291309-76312104 17q25.3 TIMP2 76623255-76641648 17q25.3 LGALS3BP 76798389-76807113 17q25.3 FLJ20748 77529010-77533990 17q25.3 GAA 77620684-77638860 17q25.3 FLJ20753 77639959-77690983 17q25.3 CBX4 77736065-77741559 17q25.3 SGSH 77757872-77760262 17q25.3 KIAA0111 77799613-77811276 17q25.3 NPTX1 78086362-78095820 17q25.3 CD7 79074198-79076869 17q25.3 CD7 79074198-79076869 17q25.3 CSNK1D 79094692-79123476 17q25.3 SECTM1 79165545-79178439 17q25.3 P4HB 79210609-79227978 17q25.3 MAFG 79241330-79242462 17q25.3 Orsetti et al. Table S3 2
2 0 2 0 0 3 0 2 /
2
e s e n e n t u i j u
j s
e e e n z z o m e i e a t e s i e r r n s r f
o
f n e
c a m n c s r u s o t c l t
c u
f C
u d
o n
n d o e a i n
c t i a s n s B e e o o r n i t p l u
y l c l b C c e M O c RP11-88B16 27,80 17q11,2 RP11-100L12 28,16 17q11,2 RP11-73F15 28,91 17q11,2 RP11-398A1 29,17 17q11,2 RP11-451O6 29,36 17q11,2 P1 .9 29,61 17q11,2 RP11-525H19 29,81 17q11,2 RP11-79O9 29,92 17q11,2 RP11-451O17 30,36 17q11,2 RP11-90A23 31,44 17q11,2 RP11-490L18 31,55 17q11,2 RP11-521P1 32,31 17q11,2 RP11-294G4 33,00 17q12 RP11-252N11 33,09 17q12 RP11-58O8 33,55 17q12 RP11-81D5 34,48 17q12 RP11-19G24 34,74 17q12
56K13 36,48 17q12 5 201L4 36,53 17q12 19108 37,02 17q12 19107 37,07 17q12 18 D152 37,29 17q12 Neu1-béa 37,36 17q12 Neu4-béa 37,36 17q12 CTD-2251j22 37,57 17q12 17 RP11-749I16 37,77 17q21,1 59G17 37,82 17q21,1 RP11-87N6 37,83 17q21,1 RP11-38L14 37,87 17q21,2 RP11-513C18 37,88 17q21,2 265E19 37,98 17q21,2 RP11-58O9 37,98 17q21,2 P1 610 38,03 17q21,2 5 RP11-241H2 38,04 17q21,2 RP11-89A22 38,17 17q21,2 RP11-268H17 38,42 17q21,2 RP11-29C11 38,98 17q21,2 RP11-266I24 40,55 17q21,31 RP3-452O8 40,66 17q21,31 184L7 40,67 17q23,3 97H8 40,68 17q21,31 RP11-436J4 41,36 17q21,31 RP11-9M20 42,67 17q21,31 RP11-79O18 44,13 17q21,31 RP11-510P20 17q21,31-17q21,3244,27 6 RP5-890E16 44,60 17q21,32 RP11-234J24 44,70 17q21,32 RP11-423H11 45,60 17q21,32 RP11-36J16 46,41 17q21,32 RP11-110H20 46,47 17q21,32 7 RP11-379D19 48,82 17q21,33 110L5 49,53 17q21,33 RP11-143M4 49,84 17q22 RP11-131C4 49,90 17q22 RP11-42M14 50,23 17q22 4 RP11-372K20 52,23 17q22 110D21 53,01 17q22 RP11-515O17 53,07 17q22 RP11-515E23 53,17 17q22 215L21 53,44 17q23,1 RP11-524I12 17q23,1-17q23,253,48 RP11-550K23 53,49 17q23,2 6 Orsetti et al. Table S3 6 RP11-670E13 54,63 17q23,2 RP5-1107A17 55,11 17q23,2 RP11-118E18 55,19 17q23,2 RP11-343K8 55,61 17q23,2 RP11-506H21 55,80 17q23,2 RP5-1171I10 56,08 17q23,2 RP5-1081P3 56,71 17q23,2 7 RP11-329E11 56,92 17q23,2 RP11-481M4 57,05 17q23,2 RP11-118K23 57,39 17q23,2 RP11-521F6 57,55 17q23,2 92E7 57,73 17q23,2 RP11-178C3 57,82 17q23,2 11 23E14 59,20 17q23,2 RP1-210A19 59,23 17q23,2 RP11-332H18 59,23 17q23,2 RP11-15K2 59,27 17q23,2 RP11-180P8 60,34 17q23,2 RP11-156L14 60,37 17q23,2 RP11-269G24 61,16 17q23,2 RP11-214C8 61,63 17q23,3 RP11-89H15 61,66 17q23,3 4 176P24 61,94 17q23,3 RP11-557B23 62,34 17q23,3 RP11-304E2 17q23,3-17q24,162,52 RP11-299G24 63,11 17q24,1 RP11-349A8 63,18 17q24,1 RP11-52B5 63,29 17q24,1 208L20 63,46 17q24,1 RP11-74H8 63,50 17q24,1 RP11-4F22 63,88 17q24,2 9 P0135 64,83 17q24,3 RP11-489G5 65,17 17q24,1 RP11-81D7 65,64 17q24,1 RP11-387O17 66,07 17q24,2 RP11-62F10 66,23 17q24,2 RP11-79K13 66,61 17q24,2 RP11-293K20 66,78 17q24,2 RP11-300G13 67,68 17q24,3 RP11-90L11 68,13 17q24,3 5 RP11-84E24 69,66 17q24,3 RP11-65C22 70,31 17q24,3 RP11-387C17 17q24,3-17q25,170,48 RP11-319A23 70,99 17q25,1 RP11-41E12 71,00 17q25,1 4 RP11-91O17 72,19 17q25,1 RP11-225G19 72,48 17q25,1 RP11-89J11 72,72 17q25,1 RP11-399J11 72,77 17q25,1 RP11-145C11 72,99 17q25,1 RP11-76G4 73,08 17q25,1 RP1-171G12 73,24 17q25,1 RP11-379P18 73,66 17q25,1 105A14 73,92 17q25,1 RP11-89B11 74,06 17q25,1 282L16 74,16 17q25,1 RP11-318A15 74,27 17q25,1 RP11-526M7 74,32 17q25,1 RP11-141D15 75,85 17q25,3 RP11-26B13 76,29 17q25,3 RP11-79L19 76,48 17q25,3 RP11-537M14 76,61 17q25,3 RP11-128J1 76,87 17q25,3 RP11-46E14 77,25 17q25,3 93J11 77,63 17q25,3 RP11-160F4 77,81 17q25,3 RP11-561K8 77,96 17q25,3 RP11-455O6 78,38 17q25,3 RP11-467J3 78,99 17q25,3 RP11-165M24 79,32 17q25,3
localisation of transition sites Orsetti et al.
Table S4: 85 genes overexpressed in case when gained at the genomic level. Asterisks indicate genes selected both as underexpressed when lost and overexpressed when gained
Segment number Gene Symbol Location (Mb) Cytoband Gene name
3 TAF2N (TAF15) 33906508-33944258 17q12 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa 3 MKP-L(DUSP14) 35255731-35279323 17q12 dual specificity phosphatase 14 3 * MLLT6 36347477-36367443 17q12 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 3 ZNF144 36376124-36388473 17q12 zinc finger protein 144 3 PSMB3 36394593-36406070 17q12 proteasome (prosome, macropain) subunit, beta type, 3 3 PIP5K2B 36409527-36441750 17q12 phosphatidylinositol-4-phosphate 5-kinase, type II, beta 3 LASP1 36529854-36581558 17q12 LIM and SH3 protein 1 3 RPL19 36860105-36864515 17q12 ribosomal protein L19 3 PPARBP 37066388-37111066 17q12 PPAR binding protein 3 PPP1R1B (DARPP32) 37283120-37289786 17q12 protein phosphatase 1, regulatory rotein phosphatase 1, regulatory (inhibitor) subunit 1B 3 MLN64 (STARD3) 37292846-37319201 17q12 START domain containing 3 (STARD3) 3 ERBB2 37355863-37384391 17q12 v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro 3 * GRB7 37569442-37578773 17q12 growth factor receptor-bound protein 7 3 MLN51 37765209-37779306 17q21.1 metastatic axillary lymph nodes,cDNA51 4 CDC6 37939552-37954705 17q21.2 CDC6 cell division cycle 6 homolog 4 * TOP2A 38045208-38073667 17q21.2 topoisomerase (DNA) II alpha 4 CCR7 38210312-38221982 17q21.2 chemokine (C-C motif) receptor 7 4 * SMARCE1 38285228-38304358 17q21.2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 4 * KRT20 38532465-38541442 17q21.2 keratin 20 4 * KRTHA1 39134483-39138352 17q21.2 keratin, hair, acidic, 1 4 * KRT13 39241737-39246354 17q21.2 keratin 13 4 * KRT15 39254502-39259645 17q21.2 keratin 15 4 ACLY 39579631-39631756 17q21.2 ATP citrate lyase 4 TTC2 39682299-39723295 17q21.2 DnaJ (Hsp40) homolog, subfamily C, member 7 4 * STAT5B 39960502-40026777 17q21.2 signal transducer and activator of transcription 5B 4 * TUBG1 40369221-40374780 17q21.2 tubulin, gamma 1 4 BECN1 40655199-40665527 17q21.31 beclin 1 (coiled-coil, myosin-like BCL2 interacting protein) 4 M17S2 41068941-41110147 17q21.31 membrane component, chromosome 17, surface marker 2 (ovarian carcinoma antigen CA125) 4 CLST11240 42444084-42446460 17q21.31 CLST 11240-15 protein 5 HIS1 42789358-42792962 17q21.31 HMBA-inducible hexamethylene-bis acetimide) 5 MAPT 43566223-43696064 17q21.31 microtubule-associated protein tau 5 GOSR2 44498391-44516025 17q21.32 golgi SNAP receptor complex member 2 5 MYL4 44784337-44802936 17q21.32 myosin, light polypeptide 4, alkali; atrial, embryonic 5 NPEPPS 45314247-45406166 17q21.32 aminopeptidase puromycin sensitive 6 SP2 45680514-45711862 17q21.32 Sp2 transcription factor 6 SNX11 45890486-45905672 17q21.32 sorting nexin 11 6 HOXB6 46384307-46387221 17q21.32 homeo box B6 6 HOXB7 46395738-46399523 17q21.32 homeo box B7 6 NDP52 46559566-46652458 17q21.32 nuclear domain protein 52 6 PHB 47193274-47203307 17q21.33 prohibitin 6 SPOP 47388449-47466495 17q21.33 speckle-type POZ protein 6 UGTREL1 (SLC35B1) 47489771-47496378 17q21.33 solute carrier family 35, member B1 6 ITGA3 47940737-47976651 17q21.33 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor) 6 PRO1855 48171731-48188047 17q21.33 hypothetical protein PRO1855 6 * FLJ11164 48269322-48276469 17q21.33 hypothetical protein FLJ11164 6 CACNA1G 48351737-48417618 17q21.33 calcium channel, voltage-dependent, alpha 1G subunit 6 * TOB1 48653351-48654546 17q21.33 transducer of ERBB2, 1 6 NME2 48956944-48962237 17q21.33 non-metastatic cells 2, protein (NM23B) expressed in 6 * TOM1L1 52708811-52770009 17q22 target of myb1-like 1 (chicken) 6 COX11 52759961-52776713 17q22 COX11 homolog, cytochrome c oxidase assembly protein (yeast) 7 * COIL 54752823-54775663 17q23.2 coilin 7 * FLJ20739 55686177-55777566 17q23.2 hypothetical protein FLJ20739 7 * ZNF161 55796051-55810451 17q23.2 zinc finger protein 161 7 * SFRS1 55825798-55829476 17q23.2 splicing factor, arginine/serine-rich 1 7 FLJ20315 56175262-56237324 17q23.2 hypothetical protein FLJ20315 7 * RAD51C 56517886-56559615 17q23.2 RAD51 homolog C (S. cerevisiae) 8 CLTC 57433676-57508480 17q23.2 clathrin, heavy polypeptide (Hc) 8 LOC51651 57511022-57521212 17q23.2 hypothetical protein LOC51651 8 RPS6KB1 57819125-57873488 17q23.2 ribosomal protein S6 kinase, 70kDa, polypeptide 1 8 PPM1D 58414297-58530650 17q23.2 protein phosphatase 1D magnesium-dependent, delta isoform 8 CYB561 61161425-61174677 17q23.2 cytochrome b-561 8 FLJ20062 61547301-61553465 17q23.3 FTSJ3 FtsJ homolog 3 (E. coli) 8 SMARCD2 61560621-61570860 17q23.3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 9 DKFZP586L0724 62575195-62601293 17q23.3 DKFZP586L0724 protein 9 * KIAA0054 (HELZ) 63140494-63341040 17q24.1 helicase with zinc finger domain 9 CACNG4 63387986-63454096 17q24.1 calcium channel, voltage-dependent, gamma subunit 4 9 PRKAR1A 66304550-66324342 17q24.2 protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) 10 MAP2K6 67254075-67293666 17q24.3 mitogen-activated protein kinase kinase 6 12 FLJ20721 71117987-71318577 17q25.1 hypothetical protein FLJ20721 12 SLC9A3R1 72760835-72781560 17q25.1 solute carrier family 9 (sodium/hydrogen exchanger), isoform 3 regulatory factor 1 12 KIAA0176 73068800-73087366 17q25.1 KCTD2: potassium channel tetramerisation domain containing 2 12 SMT3H2 73161097-73176005 17q25.1 SMT3 suppressor of mif two 3 homolog 2 12 AD023 73259304-73264299 17q25.1 AD023 protein 12 GRB2 73313175-73398819 17q25.1 growth factor receptor-bound protein 2 12 LLGL2 73523022-73542161 17q25.1 lethal giant larvae homolog 2 (Drosophila) 12 WBP2 73818122-73827758 17q25.1 WW domain binding protein 2 12 SRP68 73853819-73888378 17q25.1 signal recognition particle 68kDa 12 CDK3 73921942-73926181 17q25.1 cyclin-dependent kinase 3 13 SYNGR2 75988409-75992834 17q25.3 synaptogyrin 2 13 BIRC5 76124977-76135412 17q25.3 baculoviral IAP repeat-containing 5 (survivin) 13 TIMP2 76623255-76641648 17q25.3 tissue inhibitor of metalloproteinase 2 13 FLJ20748 77529010-77533990 17q25.3 hypothetical protein FLJ20748 13 GAA 77620684-77638860 17q25.3 lucosidase, alpha; acid (Pompe disease, glycogen storage disease type II) 13 CD7 79074198-79076869 17q25.3 CD7 antigen (p41) 13 SECTM1 79165545-79178439 17q25.3 secreted and transmembrane 1 Orsetti et al.
Table S5: 67 genes with decreased expression levels in case of copy number reduction. Asterisks indicate genes selected both as underexpressed when lost and overexpressed when gained
Segment number Gene Symbol Location (Mb) Cytoband Gene name
2 BLMH 28328675-28372393 17q11.2 bleomycin hydrolase 2 GOSR1 28557596-28602798 17q11.2 golgi SNAP receptor complex member 1 2 FLJ10120 28971716-29004074 17q11.2 hypothetical protein FLJ10120 2 HCA66 29084568-29122520 17q11.2 hepatocellular carcinoma-associated antigen 66 2 CREME9 29215318-29840209 17q11 cytokine receptor-like factor 3 (CRLF3) 2 EVI2B 29671023-29681313 17q11.2 ecotropic viral integration site 2B 2 HSA272195 (CENTA2) 30025756-30063029 17q11.2 centaurin, alpha 2 2 FLJ11040 30275051-30317955 17q11.2 hypothetical protein FLJ11040 2 CDK5R1 30581248-30582330 17q11.2 cyclin-dependent kinase 5, regulatory subunit 1 (p35) 2 NME1 31298019-31312916 17q11.2 non-metastatic cells 1, protein (NM23A) expressed in 2 SCYA7 32366930-32368947 17q11.2 chemokine (C-C motif) ligand 7 3 AP2B1 33684312-33823448 17q12 adaptor-related protein complex 2, beta 1 subunit 3 TCF2 35452160-35510785 17q12 transcription factor 2, hepatic; LF-B3; variant hepatic nuclear factor 3 * MLLT6 36347477-36367443 17q12 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 3 RPL23 36491941-36495595 17q12 ribosomal protein L23 3 * GRB7 37569442-37578773 17q12 growth factor receptor-bound protein 7 4 RARA 37961138-38012625 17q21.2 retinoic acid receptor, alpha 4 * TOP2A 38045208-38073667 17q21.2 topoisomerase (DNA) II alpha 4 IGFBP4 38099553-38113665 17q21.2 insulin-like growth factor binding protein 4 4 * SMARCE1 38285228-38304358 17q21.2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 4 * KRT20 38532465-38541442 17q21.2 keratin 20 4 KRT14 38859634-38864236 17q21.2 keratin 14 (epidermolysis bullosa simplex, Dowling-Meara, Koebner) 4 * KRTHA1 39134483-39138352 17q21.2 keratin, hair, acidic, 1 4 * KRT13 39241737-39246354 17q21.2 keratin 13 4 * KRT15 39254502-39259645 17q21.2 keratin 15 4 KRT19 39264373-39269057 17q21.2 keratin 19 4 JUP 39465596-39497955 17q21.2 junction plakoglobin 4 ACLY 39579631-39631756 17q21.2 ATP citrate lyase 4 GCN5L2 39819036-39827252 17q21.2 GCN5 general control of amino-acid synthesis 5-like 2 (yeast) 4 * STAT5B 39960502-40026777 17q21.2 signal transducer and activator of transcription 5B 4 STAT3 40032144-40105859 17q21.2 signal transducer and activator of transcription 3 (acute-phase response factor) 4 PTRF 40194164-40197002 17q21.2 polymerase I and transcript release factor 4 * TUBG1 40369221-40374780 17q21.2 tubulin, gamma 1 4 TUBG2 40390227-40397943 17q21.2 tubulin, gamma 2 4 RAMP2 40484705-40486595 17q21.2 receptor (calcitonin) activity modifying protein 2 4 UBTF 42026411-42038852 17q21.31 upstream binding transcription factor, RNA polymerase I 4 SLC4A1 42068967-42087395 17q21.31 solute carrier family 4, anion exchanger, member 1 4 RPIP8 42127708-42137966 17q21.31 RAP2 interacting protein 8 4 GRN 42164416-42172398 17q21.31 granulin 4 U5-116KD 42446478-42495441 17q21.31 homo sapiens U5 snRNP-specific protein, 116 kD 5 NMT1 42667176-42714604 17q21.31 N-myristoyltransferase 1 5 C17orf1B 42849376-42854356 17q21.31 chromosome 17 open reading frame 1 (FMNL = formin-like ) 5 KPNB1 45432815-45466539 17q21.32 karyopherin (importin) beta 1 6 HOXB13 46514889-46517166 17q21.32 homeo box B13 6 NESH 46998665-47011664 17q21.32 NESH protein (new molecule including SH3) 6 SGCA 47841156-47856749 17q21.33 sarcoglycan, alpha (50k Dadystrophin-associated glycoprotein) 6 * FLJ11164 48269322-48276469 17q21.33 hypothetical protein FLJ11164 6 * TOB1 48653351-48654546 17q21.33 transducer of ERBB2, 1 6 CA10 49420806-49950501 17q21.33 carbonic anhydrase X 6 * TOM1L1 52708811-52770009 17q22 target of myb1-like 1 (chicken) 7 DGKE 54648819-54678190 17q23.2 diacylglycerol kinase, epsilon 64kDa 7 * COIL 54752823-54775663 17q23.2 coilin 7 * FLJ20739 55686177-55777566 17q23.2 hypothetical protein FLJ20739 7 * ZNF161 55796051-55810451 17q23.2 inc finger protein 161 7 * SFRS1 55825798-55829476 17q23.2 splicing factor, arginine/serine-rich 1 7 FLJ20345 56027028-56037833 17q23.2 hypothetical protein FLJ20345 7 PRAX-1 56122817-56149704 17q23.2 BZRAP1 benzodiazapine receptor (peripheral) associated protein 1 7 PNUTL2 56341842-56353637 17q23.2 peanut-like 2 (Drosophila) 7 * RAD51C 56517886-56559615 17q23.2 RAD51 homolog C (S. cerevisiae) 9 IFI35 62367078-62368490 17q23.3 interferon-induced protein 35 9 FALZ 62415489-62493223 17q23.3 fetal Alzheimer antigen 9 * KIAA0054 (HELZ) 63140494-63341040 17q24.1 helicase with zinc finger domain 9 KPNA2 65608066-65617023 17q24.1 karyopherin alpha 2 (RAG cohort 1, importin alpha 1) 9 SLC16A6 66068625-66083128 17q24.2 solute carrier family 16 (monocarboxylic acid transporters), member 6 9 KIAA1001 66107458-66230211 17q24.2 KIAA1001 protein 9 FLJ10055 66230633-66266847 17q24.2 hypothetical protein FLJ10055 9 ABCA8 66662403-66750463 17q24.2 ATP-binding cassette, sub-family A Orsetti et al.
Table S6: 32 genes presenting reduced RNA expression when gained
Segment number Gene Symbol Location (Mb) Cytoband Gene name
3 AP2B1 33684312-33823448 17q12 adaptor-related protein complex 2, beta 1 subunit 3 ACACA 34828446-35071535 17q12 acetyl-Coenzyme A carboxylase alpha 3 RPL23 36491941-36495595 17q12 ribosomal protein L23 3 CACNB1 36833240-36857436 17q12 calcium channel, voltage-dependent, beta 1 subunit 3 TRIP3 37043716-37052820 17q21 thyroid hormone receptor interactor 3 3 KIAA0130 (TRAP100) 37619792-37624097 17q21.1 thyroid hormone receptor-associated protein (100 kDa) 3 NR1D1 37844421-37852355 17q21.1 nuclear receptor subfamily 1, group D, member 1 4 GCN5L2 39819036-39827252 17q21.2 GCN5 general control of amino-acid synthesis 5-like 2 (yeast) 4 PTRF 40194164-40197002 17q21.2 polymerase I and transcript release factor 4 RPL27 40721134-40726246 17q21.31 ribosomal protein L27 6 CBX1 45852980-45884374 17q21.32 chromobox homolog 1 (HP1 beta homolog Drosophila ) 6 HOXB2 46331186-46333469 17q21.32 homeo box B2 6 DLX4 47761041-47762871 17q21.33 distal-less homeobox 4 6 SGCA 47841156-47856749 17q21.33 sarcoglycan, alpha (50k Dadystrophin-associated glycoprotein) 6 CHAD 48255269-48259359 17q21.33 chondroadherin 6 CA10 49420806-49950501 17q21.33 carbonic anhydrase X 7 DGKE 54648819-54678190 17q23.2 diacylglycerol kinase, epsilon 64kDa 8 CA4 57703210-57712766 17q23.2 carbonic anhydrase IV 8 DKFZP564D166 60845647-61126828 17q23.2 hypothetical protein DKFZP564D166 8 MAP3K3 61350510-61422015 17q23.2 mitogen-activated protein kinase kinase kinase 3 8 GK001 61473118-61501445 17q23.3 GK001 protein 8 PECAM1 61945894-61946123 17q23.3 platelet/endothelial cell adhesion molecule (CD31 antigen) 9 VATI 62358560-62366930 17q23.3 vesicle amine transport protein 1 homolog (T californica) 9 RGS9 65188656-65278934 17q24.1 regulator of G-protein signalling 9 10 KCNJ16 67826931-67887255 17q24.3 potassium inwardly-rectifying channel, subfamily J, member 16 12 EVPL 73900189-73920672 17q25.1 envoplakin 13 SFRS2 74566601-74608427 17q25.1 splicing factor, arginine/serine-rich 2 13 MSF 75165399-75310701 17q25.3 MLL septin-like fusion 13 TK1 75994005-76140593 17q25.3 thymidine kinase 1, soluble 13 PYCR1 79270891-79275583 17q25.3 pyrroline-5-carboxylate reductase 1 13 RFNG 79429154-79431808 17q25.3 radical fringe homolog (Drosophila) 13 LOC56270 79663390-79714786 17q25.3 hypothetical protein 628