3 Patterns of Diversity and Distribution of Aquatic Invertebrates and Their Parasites
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National Monitoring Program for Biodiversity and Non-Indigenous Species in Egypt
UNITED NATIONS ENVIRONMENT PROGRAM MEDITERRANEAN ACTION PLAN REGIONAL ACTIVITY CENTRE FOR SPECIALLY PROTECTED AREAS National monitoring program for biodiversity and non-indigenous species in Egypt PROF. MOUSTAFA M. FOUDA April 2017 1 Study required and financed by: Regional Activity Centre for Specially Protected Areas Boulevard du Leader Yasser Arafat BP 337 1080 Tunis Cedex – Tunisie Responsible of the study: Mehdi Aissi, EcApMEDII Programme officer In charge of the study: Prof. Moustafa M. Fouda Mr. Mohamed Said Abdelwarith Mr. Mahmoud Fawzy Kamel Ministry of Environment, Egyptian Environmental Affairs Agency (EEAA) With the participation of: Name, qualification and original institution of all the participants in the study (field mission or participation of national institutions) 2 TABLE OF CONTENTS page Acknowledgements 4 Preamble 5 Chapter 1: Introduction 9 Chapter 2: Institutional and regulatory aspects 40 Chapter 3: Scientific Aspects 49 Chapter 4: Development of monitoring program 59 Chapter 5: Existing Monitoring Program in Egypt 91 1. Monitoring program for habitat mapping 103 2. Marine MAMMALS monitoring program 109 3. Marine Turtles Monitoring Program 115 4. Monitoring Program for Seabirds 118 5. Non-Indigenous Species Monitoring Program 123 Chapter 6: Implementation / Operational Plan 131 Selected References 133 Annexes 143 3 AKNOWLEGEMENTS We would like to thank RAC/ SPA and EU for providing financial and technical assistances to prepare this monitoring programme. The preparation of this programme was the result of several contacts and interviews with many stakeholders from Government, research institutions, NGOs and fishermen. The author would like to express thanks to all for their support. In addition; we would like to acknowledge all participants who attended the workshop and represented the following institutions: 1. -
Age Structure, Growth and Shell Form of Cerastoderma Glaucum (Bivalvia
Age structure, growth and shell form of Cerastoderma glaucum (Bivalvia: Cardiidae) from El Mellah lagoon, Algeria Lamia Bensaâd-Bendjedid, Saber Belhaoues, Asma Kerdoussi, Naouel Djebbari, Mardja Tahri, Mourad Bensouilah Laboratory of Ecobiology for Marine Environment and Coastlines, Faculty of Science, Badji Mokhtar University, Annaba 23000, Algeria. Corresponding author: L. Bensaâd-Benjedid, [email protected] Abstract. Cerastoderma glaucum (Poiret, 1789) the lagoon specialist cockle, represents one of the most abundant molluscs in El Mellah coastal lagoon (northeastern Algeria); several morphological and biological characteristics of this species were investigated over a period of 18 months (January 2014 to June 2015). Analysis of allometry and different morphometric indices indicate that this population tends to assume a globular shell shape which becomes elongated as the cockle grows. From length-frequency data examination using software FiSAT II and VONBIT for Excel, age was ranged from the first to the third year old, asymptotic length (L∞) was estimated to 48.061 mm and growth coefficient (K) was 0.71 -1 yr . The growth performance index (Φ′) and theoretical life span (tmax) were 3.21 and 4.23 yr respectively, total mortality rate (Z) obtained was 1.94 yr-1. Monthly variations in condition index were noticed, two sharp falls due spawning events were observed, the first spawning occurred between March and June and, the second one took place from August to October. The findings of the current study can be utilized to guide future research in various fields as pathology, biomonitoring and environmental management of this species. Key Words: Cerastoderma glaucum, shell shape, growth, Condition index, Algeria. -
Systema Naturae∗
Systema Naturae∗ c Alexey B. Shipunov v. 5.802 (June 29, 2008) 7 Regnum Monera [ Bacillus ] /Bacteria Subregnum Bacteria [ 6:8Bacillus ]1 Superphylum Posibacteria [ 6:2Bacillus ] stat.m. Phylum 1. Firmicutes [ 6Bacillus ]2 Classis 1(1). Thermotogae [ 5Thermotoga ] i.s. 2(2). Mollicutes [ 5Mycoplasma ] 3(3). Clostridia [ 5Clostridium ]3 4(4). Bacilli [ 5Bacillus ] 5(5). Symbiobacteres [ 5Symbiobacterium ] Phylum 2. Actinobacteria [ 6Actynomyces ] Classis 1(6). Actinobacteres [ 5Actinomyces ] Phylum 3. Hadobacteria [ 6Deinococcus ] sed.m. Classis 1(7). Hadobacteres [ 5Deinococcus ]4 Superphylum Negibacteria [ 6:2Rhodospirillum ] stat.m. Phylum 4. Chlorobacteria [ 6Chloroflexus ]5 Classis 1(8). Ktedonobacteres [ 5Ktedonobacter ] sed.m. 2(9). Thermomicrobia [ 5Thermomicrobium ] 3(10). Chloroflexi [ 5Chloroflexus ] ∗Only recent taxa. Viruses are not included. Abbreviations and signs: sed.m. (sedis mutabilis); stat.m. (status mutabilis): s., aut i. (superior, aut interior); i.s. (incertae sedis); sed.p. (sedis possibilis); s.str. (sensu stricto); s.l. (sensu lato); incl. (inclusum); excl. (exclusum); \quotes" for environmental groups; * (asterisk) for paraphyletic taxa; / (slash) at margins for major clades (\domains"). 1Incl. \Nanobacteria" i.s. et dubitativa, \OP11 group" i.s. 2Incl. \TM7" i.s., \OP9", \OP10". 3Incl. Dictyoglomi sed.m., Fusobacteria, Thermolithobacteria. 4= Deinococcus{Thermus. 5Incl. Thermobaculum i.s. 1 4(11). Dehalococcoidetes [ 5Dehalococcoides ] 5(12). Anaerolineae [ 5Anaerolinea ]6 Phylum 5. Cyanobacteria [ 6Nostoc ] Classis 1(13). Gloeobacteres [ 5Gloeobacter ] 2(14). Chroobacteres [ 5Chroococcus ]7 3(15). Hormogoneae [ 5Nostoc ] Phylum 6. Bacteroidobacteria [ 6Bacteroides ]8 Classis 1(16). Fibrobacteres [ 5Fibrobacter ] 2(17). Chlorobi [ 5Chlorobium ] 3(18). Salinibacteres [ 5Salinibacter ] 4(19). Bacteroidetes [ 5Bacteroides ]9 Phylum 7. Spirobacteria [ 6Spirochaeta ] Classis 1(20). Spirochaetes [ 5Spirochaeta ] s.l.10 Phylum 8. Planctobacteria [ 6Planctomyces ]11 Classis 1(21). -
Ueber Drei Malayische Trematoden
Armales de Parasitologie (Paris), t. 43, 1968, n° 1, pp. 33 à 43 Ueber drei malayische Trematoden (Su r t r o is T rém a to d es d e M a l a is ie ) Par Klaus ROHDE, Siew Kein LEE et Heng Wan LIM (Institut für Allgemeine Zoologie Ruhr-Universität, 463 Bochum, Allemagne) Résumé Les Trématodes de Malaisie qui suivent sont décrits : Zonor- chis sp. de Callosciurus notatus et C. caniceps, Coeuritrema macro- testicularis n. sp, de Dogania subplana et Spirhapalum elongatum n. sp. de Cyclemys amboinensis. Summary The following Malayan trematodes are described : Zonorchis sp. from Callosciurus notatus and C. caniceps, Coeuritrema macro- testicularis n. sp. from Dogania subplana, Spirhapalum elongatum n. sp. from Cyclemys amboinensis. Die im folgenden beschriebenen Würmer wurden in den Jahren 1961-1966 aus verschiedenen malayischen Tieren gesammelt, in Bouins Fixierungsflüssigkeit fixiert und mit Alaun-Karmin nach Grenacher gefärbt. Einzelheiten der Geschlechtsorgane wurden aus mit Azan gefärbten Serienschnitten rekonstruiert. Annales de Parasitologie humaine et comparée (Paris), t. 43, 1968, n° 1 3 Article available at http://www.parasite-journal.org or https://doi.org/10.1051/parasite/1968431033 34 K. ROHDE, S. K. LEE ET H. W. LIM ZOMORCHIS sp. Beschreibung. Flach, grösste Breite auf der Höhe der Hoden oder dicht dahinter, nach vorne und hinten zu schmaler werdend. Mundsaugnapf subterminal, Pharynx und Oesophagus vorhanden. Darmblindsäcke nicht ganz bis zum Körperhin- terende, manchmal von verschiedener Länge. Acetabulum im ersten Köperdrittel, sehr gross. Cirrussack zwischen Acetabulum und Pharynx, mit ausstülpbarem Cirrus. Geschlechtsöffnung am Hinterrande des Pharynx oder dicht dahinter. Hoden ganzran- dig, sich unmittelbar hinter dem Acetabulum gegenüber liegend. -
BIO 475 - Parasitology Spring 2009 Stephen M
BIO 475 - Parasitology Spring 2009 Stephen M. Shuster Northern Arizona University http://www4.nau.edu/isopod Lecture 12 Platyhelminth Systematics-New Euplatyhelminthes Superclass Acoelomorpha a. Simple pharynx, no gut. b. Usually free-living in marine sands. 3. Also parasitic/commensal on echinoderms. 1 Euplatyhelminthes 2. Superclass Rhabditophora - with rhabdites Euplatyhelminthes 2. Superclass Rhabditophora - with rhabdites a. Class Rhabdocoela 1. Rod shaped gut (hence the name) 2. Often endosymbiotic with Crustacea or other invertebrates. Euplatyhelminthes 3. Example: Syndesmis a. Lives in gut of sea urchins, entirely on protozoa. 2 Euplatyhelminthes Class Temnocephalida a. Temnocephala 1. Ectoparasitic on crayfish 5. Class Tricladida a. like planarians b. Bdelloura 1. live in gills of Limulus Class Temnocephalida 4. Life cycles are poorly known. a. Seem to have slightly increased reproductive capacity. b. Retain many morphological characters that permit free-living existence. Euplatyhelminth Systematics 3 Parasitic Platyhelminthes Old Scheme Characters: 1. Tegumental cell extensions 2. Prohaptor 3. Opisthaptor Superclass Neodermata a. Loss of characters associated with free-living existence. 1. Ciliated larval epidermis, adult epidermis is syncitial. Superclass Neodermata b. Major Classes - will consider each in detail: 1. Class Trematoda a. Subclass Aspidobothrea b. Subclass Digenea 2. Class Monogenea 3. Class Cestoidea 4 Euplatyhelminth Systematics Euplatyhelminth Systematics Class Cestoidea Two Subclasses: a. Subclass Cestodaria 1. Order Gyrocotylidea 2. Order Amphilinidea b. Subclass Eucestoda 5 Euplatyhelminth Systematics Parasitic Flatworms a. Relative abundance related to variety of parasitic habitats. b. Evidence that such characters lead to great speciation c. isolated populations, unique selective environments. Parasitic Flatworms d. Also, very good organisms for examination of: 1. Complex life cycles; selection favoring them 2. -
New Zealand's Genetic Diversity
1.13 NEW ZEALAND’S GENETIC DIVERSITY NEW ZEALAND’S GENETIC DIVERSITY Dennis P. Gordon National Institute of Water and Atmospheric Research, Private Bag 14901, Kilbirnie, Wellington 6022, New Zealand ABSTRACT: The known genetic diversity represented by the New Zealand biota is reviewed and summarised, largely based on a recently published New Zealand inventory of biodiversity. All kingdoms and eukaryote phyla are covered, updated to refl ect the latest phylogenetic view of Eukaryota. The total known biota comprises a nominal 57 406 species (c. 48 640 described). Subtraction of the 4889 naturalised-alien species gives a biota of 52 517 native species. A minimum (the status of a number of the unnamed species is uncertain) of 27 380 (52%) of these species are endemic (cf. 26% for Fungi, 38% for all marine species, 46% for marine Animalia, 68% for all Animalia, 78% for vascular plants and 91% for terrestrial Animalia). In passing, examples are given both of the roles of the major taxa in providing ecosystem services and of the use of genetic resources in the New Zealand economy. Key words: Animalia, Chromista, freshwater, Fungi, genetic diversity, marine, New Zealand, Prokaryota, Protozoa, terrestrial. INTRODUCTION Article 10b of the CBD calls for signatories to ‘Adopt The original brief for this chapter was to review New Zealand’s measures relating to the use of biological resources [i.e. genetic genetic resources. The OECD defi nition of genetic resources resources] to avoid or minimize adverse impacts on biological is ‘genetic material of plants, animals or micro-organisms of diversity [e.g. genetic diversity]’ (my parentheses). -
Number of Living Species in Australia and the World
Numbers of Living Species in Australia and the World 2nd edition Arthur D. Chapman Australian Biodiversity Information Services australia’s nature Toowoomba, Australia there is more still to be discovered… Report for the Australian Biological Resources Study Canberra, Australia September 2009 CONTENTS Foreword 1 Insecta (insects) 23 Plants 43 Viruses 59 Arachnida Magnoliophyta (flowering plants) 43 Protoctista (mainly Introduction 2 (spiders, scorpions, etc) 26 Gymnosperms (Coniferophyta, Protozoa—others included Executive Summary 6 Pycnogonida (sea spiders) 28 Cycadophyta, Gnetophyta under fungi, algae, Myriapoda and Ginkgophyta) 45 Chromista, etc) 60 Detailed discussion by Group 12 (millipedes, centipedes) 29 Ferns and Allies 46 Chordates 13 Acknowledgements 63 Crustacea (crabs, lobsters, etc) 31 Bryophyta Mammalia (mammals) 13 Onychophora (velvet worms) 32 (mosses, liverworts, hornworts) 47 References 66 Aves (birds) 14 Hexapoda (proturans, springtails) 33 Plant Algae (including green Reptilia (reptiles) 15 Mollusca (molluscs, shellfish) 34 algae, red algae, glaucophytes) 49 Amphibia (frogs, etc) 16 Annelida (segmented worms) 35 Fungi 51 Pisces (fishes including Nematoda Fungi (excluding taxa Chondrichthyes and (nematodes, roundworms) 36 treated under Chromista Osteichthyes) 17 and Protoctista) 51 Acanthocephala Agnatha (hagfish, (thorny-headed worms) 37 Lichen-forming fungi 53 lampreys, slime eels) 18 Platyhelminthes (flat worms) 38 Others 54 Cephalochordata (lancelets) 19 Cnidaria (jellyfish, Prokaryota (Bacteria Tunicata or Urochordata sea anenomes, corals) 39 [Monera] of previous report) 54 (sea squirts, doliolids, salps) 20 Porifera (sponges) 40 Cyanophyta (Cyanobacteria) 55 Invertebrates 21 Other Invertebrates 41 Chromista (including some Hemichordata (hemichordates) 21 species previously included Echinodermata (starfish, under either algae or fungi) 56 sea cucumbers, etc) 22 FOREWORD In Australia and around the world, biodiversity is under huge Harnessing core science and knowledge bases, like and growing pressure. -
Eucestoda: Tetraphyllidea
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Faculty Publications from the Harold W. Manter Laboratory of Parasitology Parasitology, Harold W. Manter Laboratory of 6-1988 Rhinebothrium devaneyi n. sp. (Eucestoda: Tetraphyllidea) and Echinocephalus overstreeti Deardorff and Ko, 1983 (Nematoda: Gnathostomatidae) in a Thorny Back Ray, Urogymnus asperrimus, from Enewetak Atoll, with Phylogenetic Analysis of Both Species Groups Daniel R. Brooks University of Toronto, [email protected] Thomas L. Deardorff United States Food and Drug Administration Follow this and additional works at: https://digitalcommons.unl.edu/parasitologyfacpubs Part of the Parasitology Commons Brooks, Daniel R. and Deardorff, Thomas L., "Rhinebothrium devaneyi n. sp. (Eucestoda: Tetraphyllidea) and Echinocephalus overstreeti Deardorff and Ko, 1983 (Nematoda: Gnathostomatidae) in a Thorny Back Ray, Urogymnus asperrimus, from Enewetak Atoll, with Phylogenetic Analysis of Both Species Groups" (1988). Faculty Publications from the Harold W. Manter Laboratory of Parasitology. 240. https://digitalcommons.unl.edu/parasitologyfacpubs/240 This Article is brought to you for free and open access by the Parasitology, Harold W. Manter Laboratory of at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Faculty Publications from the Harold W. Manter Laboratory of Parasitology by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. J. Parasit., 74(3), 1988, pp. 459-465 ? American Society -
Applied Zoology
Animal Diversity- I (Non-Chordates) Phylum Platyhelminthes Ranjana Saxena Associate Professor, Department of Zoology, Dyal Singh College, University of Delhi Delhi – 110 007 e-mail: [email protected] Contents: PLATYHELMINTHES DUGESIA (EUPLANARIA) Fasciola hepatica SCHISTOSOMA OR SPLIT BODY Schistosoma japonicum Diphyllobothrium latum Echinococcus granulosus EVOLUTION OF PARASITISM IN HELMINTHES PARASITIC ADAPTATION IN HELMINTHES CLASSIFICATION Class Turbellaria Class Monogenea Class Trematoda Class Cestoda PLATYHELMINTHES IN GREEK:PLATYS means FLAT; HELMINTHES means WORM The term platyhelminthes was first proposed by Gaugenbaur in 1859 and include all flatworms. They are soft bodied, unsegmented, dorsoventrally flattened worms having a bilateral symmetry, with organ grade of organization. Flatworms are acoelomate and triploblastic. The majority of these are parasitic. The free living forms are generally aquatic, either marine or fresh water. Digestive system is either absent or incomplete with a single opening- the mouth, anus is absent. Circulatory, respiratory and skeletal system are absent. Excretion and osmoregulation is brought about by protonephridia or flame cells. Ammonia is the chief excretory waste product. Nervous system is of the primitive type having a pair of cerebral ganglia and longitudinal nerves connected by transverse commissures. Sense organs are poorly developed, present only in the free living forms. Basically hermaphrodite with a complex reproductive system. Development is either direct or indirect with one or more larval stages. Flatworms have a remarkable power of regeneration. The phylum includes about 13,000 species. Here Dugesia and Fasciola hepatica will be described as the type study to understand the phylum. Some of the medically important parasitic helminthes will also be discussed. Evolution of parasitism and parasitic adaptations is of utmost importance for the endoparasitic platyhelminthes and will also be discussed here. -
Parasites As Biological Tags of Fish Stocks
145 Parasites as biological tags of fish stocks: a meta-analysis of their discriminatory power ROBERT POULIN* and TSUKUSHI KAMIYA Department of Zoology, University of Otago, P.O. Box 56, Dunedin, New Zealand (Received 7 July 2013; revised 30 July 2013; accepted 31 July 2013; first published online 24 October 2013) SUMMARY The use of parasites as biological tags to discriminate among marine fish stocks has become a widely accepted method in fisheries management. Here, we first link this approach to its unstated ecological foundation, the decay in the similarity of the species composition of assemblages as a function of increasing distance between them, a phenomenon almost universal in nature. We explain how distance decay of similarity can influence the use of parasites as biological tags. Then, we perform a meta-analysis of 61 uses of parasites as tags of marine fish populations in multivariate discriminant analyses, obtained from 29 articles. Our main finding is that across all studies, the observed overall probability of correct classification of fish based on parasite data was about 71%. This corresponds to a two-fold improvement over the rate of correct classification expected by chance alone, and the average effect size (Zr = 0·463) computed from the original values was also indicative of a medium-to- large effect. However, none of the moderator variables included in the meta-analysis had a significant effect on the proportion of correct classification; these moderators included the total number of fish sampled, the number of parasite species used in the discriminant analysis, the number of localities from which fish were sampled, the minimum and maximum distance between any pair of sampling localities, etc. -
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MarLIN Marine Information Network Information on the species and habitats around the coasts and sea of the British Isles Lagoon cockle (Cerastoderma glaucum) MarLIN – Marine Life Information Network Biology and Sensitivity Key Information Review Nicola White 2002-07-15 A report from: The Marine Life Information Network, Marine Biological Association of the United Kingdom. Please note. This MarESA report is a dated version of the online review. Please refer to the website for the most up-to-date version [https://www.marlin.ac.uk/species/detail/1315]. All terms and the MarESA methodology are outlined on the website (https://www.marlin.ac.uk) This review can be cited as: White, N. 2002. Cerastoderma glaucum Lagoon cockle. In Tyler-Walters H. and Hiscock K. (eds) Marine Life Information Network: Biology and Sensitivity Key Information Reviews, [on-line]. Plymouth: Marine Biological Association of the United Kingdom. DOI https://dx.doi.org/10.17031/marlinsp.1315.1 The information (TEXT ONLY) provided by the Marine Life Information Network (MarLIN) is licensed under a Creative Commons Attribution-Non-Commercial-Share Alike 2.0 UK: England & Wales License. Note that images and other media featured on this page are each governed by their own terms and conditions and they may or may not be available for reuse. Permissions beyond the scope of this license are available here. Based on a work at www.marlin.ac.uk (page left blank) Date: 2002-07-15 Lagoon cockle (Cerastoderma glaucum) - Marine Life Information Network See online review for distribution map Three Cerastoderma glaucum with siphons extended. Distribution data supplied by the Ocean Photographer: Dennis R. -
Biodiversity and Trophic Ecology of Hydrothermal Vent Fauna Associated with Tubeworm Assemblages on the Juan De Fuca Ridge
Biogeosciences, 15, 2629–2647, 2018 https://doi.org/10.5194/bg-15-2629-2018 © Author(s) 2018. This work is distributed under the Creative Commons Attribution 4.0 License. Biodiversity and trophic ecology of hydrothermal vent fauna associated with tubeworm assemblages on the Juan de Fuca Ridge Yann Lelièvre1,2, Jozée Sarrazin1, Julien Marticorena1, Gauthier Schaal3, Thomas Day1, Pierre Legendre2, Stéphane Hourdez4,5, and Marjolaine Matabos1 1Ifremer, Centre de Bretagne, REM/EEP, Laboratoire Environnement Profond, 29280 Plouzané, France 2Département de sciences biologiques, Université de Montréal, C.P. 6128, succursale Centre-ville, Montréal, Québec, H3C 3J7, Canada 3Laboratoire des Sciences de l’Environnement Marin (LEMAR), UMR 6539 9 CNRS/UBO/IRD/Ifremer, BP 70, 29280, Plouzané, France 4Sorbonne Université, UMR7144, Station Biologique de Roscoff, 29680 Roscoff, France 5CNRS, UMR7144, Station Biologique de Roscoff, 29680 Roscoff, France Correspondence: Yann Lelièvre ([email protected]) Received: 3 October 2017 – Discussion started: 12 October 2017 Revised: 29 March 2018 – Accepted: 7 April 2018 – Published: 4 May 2018 Abstract. Hydrothermal vent sites along the Juan de Fuca community structuring. Vent food webs did not appear to be Ridge in the north-east Pacific host dense populations of organised through predator–prey relationships. For example, Ridgeia piscesae tubeworms that promote habitat hetero- although trophic structure complexity increased with ecolog- geneity and local diversity. A detailed description of the ical successional stages, showing a higher number of preda- biodiversity and community structure is needed to help un- tors in the last stages, the food web structure itself did not derstand the ecological processes that underlie the distribu- change across assemblages.