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Case Study: Testing for Genetic Disorders
Case study: Testing for genetic disorders Purpose: A genetic disorder is a disorder that is caused by an abnormality (or several abnormalities) in a person’s genome. Genetic disorders are often hereditary, which means they are passed down to a child from its parents. The most common genetic disorder is familial hypercholesterolaemia (a genetic predisposition to high cholesterol levels), which is thought to affect 1 in 250 people in the UK. Other disorders, such as cystic fibrosis, are rarer although they can be relatively common in particular ethnic groups; for instance, the incidence of cystic fibrosis in Scotland is almost double the global average. Collectively genetic disorders affect lots of people because there are more than 10,000 different types worldwide. Genetic testing is used to inform people whether they have a disorder, or if there is a chance they might pass a disorder on to their children. Photo credit: jxfzsy/ iStockphoto Photo credit: monkeybusiness/ iStockphoto Approaches to identifying genetic disorders In the UK, if a person is concerned they might have, or might develop, a genetic disorder based on their family history, they can: Go to their GP, who might refer them for genetic testing. Patients usually provide a DNA sample, which is then analysed for a specific abnormality. Usually a single gene will be tested, but whole-genome sequencing approaches are being developed. The 100,000 Genomes Project, for example, aims to study whole-genome sequences from patients with cancer and rare disease Use a commercial genetic testing service. In this case, customers collect samples of their own DNA and send them away for analysis and interpretation Take no action. -
KAT6A Syndrome: Genotype-Phenotype Correlation in 76 Patients with Pathogenic KAT6A Variants
KAT6A Syndrome: genotype-phenotype correlation in 76 patients with pathogenic KAT6A variants. Item Type Article Authors Kennedy, Joanna;Goudie, David;Blair, Edward;Chandler, Kate;Joss, Shelagh;McKay, Victoria;Green, Andrew;Armstrong, Ruth;Lees, Melissa;Kamien, Benjamin;Hopper, Bruce;Tan, Tiong Yang;Yap, Patrick;Stark, Zornitza;Okamoto, Nobuhiko;Miyake, Noriko;Matsumoto, Naomichi;Macnamara, Ellen;Murphy, Jennifer L;McCormick, Elizabeth;Hakonarson, Hakon;Falk, Marni J;Li, Dong;Blackburn, Patrick;Klee, Eric;Babovic- Vuksanovic, Dusica;Schelley, Susan;Hudgins, Louanne;Kant, Sarina;Isidor, Bertrand;Cogne, Benjamin;Bradbury, Kimberley;Williams, Mark;Patel, Chirag;Heussler, Helen;Duff- Farrier, Celia;Lakeman, Phillis;Scurr, Ingrid;Kini, Usha;Elting, Mariet;Reijnders, Margot;Schuurs-Hoeijmakers, Janneke;Wafik, Mohamed;Blomhoff, Anne;Ruivenkamp, Claudia A L;Nibbeling, Esther;Dingemans, Alexander J M;Douine, Emilie D;Nelson, Stanley F;Arboleda, Valerie A;Newbury-Ecob, Ruth DOI 10.1038/s41436-018-0259-2 Journal Genetics in medicine : official journal of the American College of Medical Genetics Download date 30/09/2021 21:53:13 Link to Item http://hdl.handle.net/10147/627191 Find this and similar works at - http://www.lenus.ie/hse HHS Public Access Author manuscript Author ManuscriptAuthor Manuscript Author Genet Med Manuscript Author . Author manuscript; Manuscript Author available in PMC 2019 October 01. Published in final edited form as: Genet Med. 2019 April ; 21(4): 850–860. doi:10.1038/s41436-018-0259-2. KAT6A Syndrome: Genotype-phenotype correlation in 76 patients with pathogenic KAT6A variants A full list of authors and affiliations appears at the end of the article. Abstract Purpose: Mutations in KAT6A have recently been identified as a cause of syndromic developmental delay. -
DOI: 10.4274/Jcrpe.Galenos.2021.2020.0175
DOI: 10.4274/jcrpe.galenos.2021.2020.0175 Case report A novel SCNN1A variation in a patient with autosomal-recessive pseudohypoaldosteronism type 1 Mohammed Ayed Huneif1*, Ziyad Hamad AlHazmy2, Anas M. Shoomi 3, Mohammed A. AlGhofely 3, Dr Humariya Heena 5, Aziza M. Mushiba 4, Abdulhamid AlSaheel3 1Pediatric Endocrinologist at Najran university hospital, Najran Saudi Arabia. 2 Pediatric Endocrinologist at Al yamammah hospital, , Riyadh, Saudi Arabia. 3 Pediatric Endocrinologist at Pediatric endocrine department,. Obesity, Endocrine, and Metabolism Center, , King Fahad Medical City, Riyadh, Saudi Arabia. 4Clinical Geneticist, Pediatric Subspecialties Department, Children's Specialized Hospital, King Fahad Medical City, Riyadh, Saudi Arabia. 5 Research Center, King Fahad Medical City, Riyadh , Saudi Arabia What is already known on this topic ? Autosomal-recessive pseudohypoaldosteronism type 1 (PHA1) is a rare genetic disorder caused by different variations in the ENaC subunit genes. Most of these variations appear in SCNN1A mainly in exon eight, which encodes for the alpha subunit of the epithelial sodium channel ENaC. Variations are nonsense, single-base deletions or insertions, or splice site variations, leading to mRNA and proteins of abnormal length. In addition, a few new missense variations have been reported. What this study adds ? We report a novel mutation [ c.729_730delAG (p.Val245Glyfs*65) ] in the exon 4 of the SCNN1A gene In case of autosomal recessive pseudohypoaldosteronism type 1. Patient with PHA1 requires early recognition, proper treatment, and close follow-up. Parents are advised to seek genetic counseling and plan future pregnancies. proof Abstract Pseudohypoaldosteronism type 1 (PHA1) is an autosomal-recessive disorder characterized by defective regulation of body sodium levels. -
ONCOPANEL (Popv3)
ONCOPANEL (POPv3) TEST INFORMATION BACKGROUND: Somatic genetic alterations in oncogenes and tumor-suppressor genes contribute to the pathogenesis and evolution of human cancers. These alterations can provide prognostic and predictive information and stratify cancers for targeted therapeutic information. We classify these alterations into five tiers using the following guidelines: Tier 1: The alteration has well-established published evidence confirming clinical utility in this tumor type, in at least one of the following contexts: predicting response to treatment with an FDA-approved therapy; assessing prognosis; establishing a definitive diagnosis; or conferring an inherited increased risk of cancer to this patient and family. Tier 2: The alteration may have clinical utility in at least one of the following contexts: selection of an investigational therapy in clinical trials for this cancer type; limited evidence of prognostic association; supportive of a specific diagnosis; proven association of response to treatment with an FDA-approved therapy in a different type of cancer; or similar to a different mutation with a proven association with response to treatment with an FDA-approved therapyin this type of cancer. Tier 3: The alteration is of uncertain clinical utility, but may have a role as suggested by at least one of the following: demonstration of association with response to treatment in this cancer type in preclinical studies (e.g., in vitro studies or animal models); alteration in a biochemical pathway that has other known, therapeutically-targetable alterations; alteration in a highly conserved region of the protein predicted, in silico, to alter protein function; or selection of an investigational therapy for a different cancer type. -
Genetic Syndromes and Genes Involved
ndrom Sy es tic & e G n e e n G e f Connell et al., J Genet Syndr Gene Ther 2013, 4:2 T o Journal of Genetic Syndromes h l e a r n a DOI: 10.4172/2157-7412.1000127 r p u y o J & Gene Therapy ISSN: 2157-7412 Review Article Open Access Genetic Syndromes and Genes Involved in the Development of the Female Reproductive Tract: A Possible Role for Gene Therapy Connell MT1, Owen CM2 and Segars JH3* 1Department of Obstetrics and Gynecology, Truman Medical Center, Kansas City, Missouri 2Department of Obstetrics and Gynecology, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania 3Program in Reproductive and Adult Endocrinology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, Maryland, USA Abstract Müllerian and vaginal anomalies are congenital malformations of the female reproductive tract resulting from alterations in the normal developmental pathway of the uterus, cervix, fallopian tubes, and vagina. The most common of the Müllerian anomalies affect the uterus and may adversely impact reproductive outcomes highlighting the importance of gaining understanding of the genetic mechanisms that govern normal and abnormal development of the female reproductive tract. Modern molecular genetics with study of knock out animal models as well as several genetic syndromes featuring abnormalities of the female reproductive tract have identified candidate genes significant to this developmental pathway. Further emphasizing the importance of understanding female reproductive tract development, recent evidence has demonstrated expression of embryologically significant genes in the endometrium of adult mice and humans. This recent work suggests that these genes not only play a role in the proper structural development of the female reproductive tract but also may persist in adults to regulate proper function of the endometrium of the uterus. -
Benefits of Cancerplex
CancerPlexSM is a comprehensive genetic assessment of a patient’s tumor that guides oncologists towards effective treatment options. What is CancerPlex? CancerPlex is a next generation DNA sequencing test for solid SM tumors. The specific coding regions of over 400 known cancer Potential outcomes from CancerPlex genes are simultaneously determined using a small amount of Identification of variants associated with response or resis- DNA extracted from tumor samples, including formalin-fixed, tance to an FDA-approved therapy for the patient’s disease. paraffin-embedded (FFPE) tissue and cell blocks from fine-needle aspirates or effusions. This analysis is performed in a single assay, Identification of variants associated with response or resis- simplifying and streamlining the test ordering process, and eliminat- tance to a therapy associated with another clinical indication. ing time consuming serial testing. Clinically actionable information unique to each patient’s tumor is consolidated into a simple report. Identification of variants associated with a therapy(s) in CancerPlex reveals missense changes, insertions and deletions, clinical development. and previously described rearrangements of ALK, RET, and ROS. Benefits of CancerPlex: CancerPlex genes were selected because of their importance in tumor The average turn-around-time for CancerPlex is under 10 biology. Analyzing more genes increases the chance of discovering business days, dramatically shortening the waiting period for actionable findings that lead to more choices for treatment. Our initial the start of treatment. results indicate that CancerPlex analysis identifies actionable findings up to 20% more frequently than previously published studies. CancerPlex ordering is simple: KEW provides all necessary shipping materials, can facilitate tissue retrieval and return with Since knowledge of tumor biology changes rapidly, CancerPlex pathologists, and manages 3rd party payment for the test. -
Further Delineation of the Clinical Spectrum of KAT6B Disorders and Allelic Series of Pathogenic Variants
ARTICLE © American College of Medical Genetics and Genomics Further delineation of the clinical spectrum of KAT6B disorders and allelic series of pathogenic variants Li Xin Zhang1, Gabrielle Lemire, MD2, Claudia Gonzaga-Jauregui, PhD3, Sirinart Molidperee, Gr. Cert1, Carolina Galaz-Montoya, MD3, David S. Liu, MD3, Alain Verloes, MD PhD4, Amelle G. Shillington, DO5, Kosuke Izumi, MD PhD6, Alyssa L. Ritter, MS LCGC7, Beth Keena, MS LCGC6, Elaine Zackai, MD7,8, Dong Li, PhD9, Elizabeth Bhoj, MD PhD7, Jennifer M. Tarpinian, MS CGC10, Emma Bedoukian, MS LCGC10, Mary K. Kukolich, MD11, A. Micheil Innes, MD12, Grace U. Ediae, BSc13, Sarah L. Sawyer, MD PhD14, Karippoth Mohandas Nair, MD15, Para Chottil Soumya, MD15, Kinattinkara R. Subbaraman, MD15, Frank J. Probst, MD PhD3,16, Jennifer A. Bassetti, MD3,16, Reid V. Sutton, MD3,16, Richard A. Gibbs, PhD3, Chester Brown, MD PhD17, Philip M. Boone, MD PhD18, Ingrid A. Holm, MD MPH18, Marco Tartaglia, PhD19, Giovanni Battista Ferrero, MD PhD20, Marcello Niceta, MD PhD19, Maria Lisa Dentici, MD19, Francesca Clementina Radio, MD PhD19, Boris Keren, MD21, Constance F. Wells, MD22, Christine Coubes, MD22, Annie Laquerrière, MD PhD23, Jacqueline Aziza, MD24, Charlotte Dubucs, MD24, Sheela Nampoothiri, MD25, David Mowat, MD26, Millan S. Patel, MD27, Ana Bracho, MD28, Francisco Cammarata-Scalisi, MD29, Alper Gezdirici, MD30, Alberto Fernandez-Jaen, MD31, Natalie Hauser, MD32, Yuri A. Zarate, MD33, Katherine A. Bosanko, MS CGC33, Klaus Dieterich, MD PhD34, John C. Carey, MD MPH35, Jessica X. Chong, PhD36,37, Deborah A. Nickerson, PhD37,38, Michael J. Bamshad, MD36,37, Brendan H. Lee, MD PhD3, Xiang-Jiao Yang, PhD39, James R. -
Inheriting Genetic Conditions
Help Me Understand Genetics Inheriting Genetic Conditions Reprinted from MedlinePlus Genetics U.S. National Library of Medicine National Institutes of Health Department of Health & Human Services Table of Contents 1 What does it mean if a disorder seems to run in my family? 1 2 Why is it important to know my family health history? 4 3 What are the different ways a genetic condition can be inherited? 6 4 If a genetic disorder runs in my family, what are the chances that my children will have the condition? 15 5 What are reduced penetrance and variable expressivity? 18 6 What do geneticists mean by anticipation? 19 7 What are genomic imprinting and uniparental disomy? 20 8 Are chromosomal disorders inherited? 22 9 Why are some genetic conditions more common in particular ethnic groups? 23 10 What is heritability? 24 Reprinted from MedlinePlus Genetics (https://medlineplus.gov/genetics/) i Inheriting Genetic Conditions 1 What does it mean if a disorder seems to run in my family? A particular disorder might be described as “running in a family” if more than one person in the family has the condition. Some disorders that affect multiple family members are caused by gene variants (also known as mutations), which can be inherited (passed down from parent to child). Other conditions that appear to run in families are not causedby variants in single genes. Instead, environmental factors such as dietary habits, pollutants, or a combination of genetic and environmental factors are responsible for these disorders. It is not always easy to determine whether a condition in a family is inherited. -
Restoration of Fertility by Gonadotropin Replacement in a Man With
J Rohayem and others Fertility in hypogonadotropic 170:4 K11–K17 Case Report CAH with TARTs Restoration of fertility by gonadotropin replacement in a man with hypogonadotropic azoospermia and testicular adrenal rest tumors due to untreated simple virilizing congenital adrenal hyperplasia Julia Rohayem1, Frank Tu¨ ttelmann2, Con Mallidis3, Eberhard Nieschlag1,4, Sabine Kliesch1 and Michael Zitzmann1 Correspondence should be addressed 1Center of Reproductive Medicine and Andrology, Clinical Andrology, University of Muenster, Albert-Schweitzer- to J Rohayem Campus 1, Building D11, D-48149 Muenster, Germany, 2Institute of Human Genetics and 3Institute of Reproductive Email and Regenerative Biology, Center of Reproductive Medicine and Andrology, University of Muenster, Muenster, Julia.Rohayem@ Germany and 4Center of Excellence in Genomic Medicine Research, King Abdulaziz University, Jeddah, Saudi Arabia ukmuenster.de Abstract Context: Classical congenital adrenal hyperplasia (CAH), a genetic disorder characterized by 21-hydroxylase deficiency, impairs male fertility, if insufficiently treated. Patient: A 30-year-old male was referred to our clinic for endocrine and fertility assessment after undergoing unilateral orchiectomy for a suspected testicular tumor. Histopathological evaluation of the removed testis revealed atrophy and testicular adrenal rest tumors (TARTs) and raised the suspicion of underlying CAH. The remaining testis was also atrophic (5 ml) with minor TARTs. Serum 17-hydroxyprogesterone levels were elevated, cortisol levels were at the lower limit of normal range, and gonadotropins at prepubertal levels, but serum testosterone levels were within the normal adult range. Semen analysis revealed azoospermia. CAH was confirmed by a homozygous mutation g.655A/COG (IVS2-13A/COG) in European Journal of Endocrinology CYP21A2. Hydrocortisone (24 mg/m2) administered to suppress ACTH and adrenal androgen overproduction unmasked deficient testicular testosterone production. -
Beckwith's Syndrome) M
Postgrad Med J: first published as 10.1136/pgmj.46.533.162 on 1 March 1970. Downloaded from 162 Case reports VAN DER SLUYS VEER, J., CHOUFOER, J.C., QUERIDO, A., Lancet, i, 1416. VAN DER HEUL, R.O., HOLLANDER, C.F. & VAN RIJSSEL, ZOLLINGER, R.M. & ELLIOTT, D.W. (1959) Pancreatic T.G. (1964) Metastasizing islet cell tumour of the pancreas endocrine function and peptic ulceration. Gastroenter- associated with hypoglycaemia and carcinoid syndrome. ology, 37, 401. Macroglossia, abnormal umbilicus and hypoglycaemia (Beckwith's syndrome) M. W. MONCRIEFF* J. R. MANN M.A., B.M., M.R.C.P. M.B., M.R.C.P., D.C.H. Lecturer in Paediatrics, Registrar in Paediatrics, University of Birmingham Birmingham Children's Hospital A. R. GOLDSMITH G. W. CHANCE M.B.B.S. M.B., M.R.C.P., D.C.H. Registrar in Pathology, Senior Lecturer in Paediatrics, Birmingham Children's Hospital University ofBirmingham Introduction lobe and three had a dome-like elevation of the The syndrome of exomphalos, macroglossia, post- posterior part of the diaphragm. The six surviving natal somatic gigantism and severe hypoglycaemia children developed a characteristic facies with prog- copyright. in various combinations was first described in seven nathos, mid-facial under development and slight infants by Beckwith (1963) and Beckwith et al. exophthalmos, and a mid-line frontal ridge. Post- (1964). At necropsy the main features were cyto- natal somatic gigantism occurred in five of the six megaly of the foetal adrenal cortex, renal medullary survivors. A further seven cases with macroglossia dysplasia, and hyperplasia of the pancreas and and umbilical abnormality were reported by Shafer kidneys. -
A New Age in the Genetics of Deafness
, September/October 1999. Vol. 1 . No. 6 invited review/cme article A new age in the genetics of deafness Heidi L. Rehtu, MMSC' ot~dCytltllia C. Morton, PAD' Over the last several years, an understanding of the genetics SYNDROMIC AND NONSYNDROMIC DEAFNESS of hearing and deafness has grown exponentially. This progress , The prevalence of severe to profound bilateral congenital has been fueled by fast-paced developments in gene mapping hearing loss is estimated at 1 in 1000 births? When milder I and discovery, leading to the recent cloning and characteriza- forms of permanent hearing impairment at birth are included, tion of many genes critical in the biology of hearing. Among this estimate increases four-fold. Congenital deafness refers to the most significant advances, especially from a clinical per- deafness present at birth, though the cause of such hearing spective, is the discovery that up to 50% of nonsyndromic re- impairment may be genetic (hereditary) or environmental (ac- cessive deafness is caused by mutations in the GIB2 gene, which quired). Various studies estimate that approximately one-half encodes the connexin 26 protein (Cx26).I.' The clinical use of of the cases of congenital deafness are due to genetic factor^,^ screening for mutations in Cx26 and other genes involved in and these factors can be further subdivided by mode of inher- hearing impairment is still a new concept and not widely avail- itance. Approximately 77% of cases of hereditary deafness are able. However, the eventual availability of an array of genetic autosomal recessive, 22% are autosomal dominant, and 1% are tests is likely to have a major impact on the medical decisions X-linked.-l In addition, a small fraction of hereditary deafness made by hearing-impaired patients, their families, and their (< 1%) represents those families with mitochondria1 inheri- physicians. -
Waardenburg Syndrome: Case Series
International Journal of Otorhinolaryngology and Head and Neck Surgery Sachdeva S et al. Int J Otorhinolaryngol Head Neck Surg. 2021 Apr;7(4):668-671 http://www.ijorl.com pISSN 2454-5929 | eISSN 2454-5937 DOI: https://dx.doi.org/10.18203/issn.2454-5929.ijohns20211191 Case Series Waardenburg syndrome: case series Sheenu Sachdeva*, Varunkumar Jayakumar, Shubhlaxmi Atmaram Jaiswal Department of Otorhinolaryngology, Dr. V. M. G. M. C Solapur, Maharashtra, India Received: 13 January 2021 Revised: 16 February 2021 Accepted: 06 March 2021 *Correspondence: Dr. Sheenu Sachdeva, E-mail: [email protected] Copyright: © the author(s), publisher and licensee Medip Academy. This is an open-access article distributed under the terms of the Creative Commons Attribution Non-Commercial License, which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. ABSTRACT Waardenburg syndrome is a rare genetic disorder of neural crest cell development with incidence of 1:42000 to 1:50,000. The syndrome is not completely expressed and hence adds to its hetergenecity with symptoms varying from one type of syndrome to another and from one patient to another. Unilateral heterochromia that manifests in some people is associated with Waardenburg syndrome and Parry-Romberg syndrome. This is a case series of four cases with features of Waardenburg syndrome with variable presentations and familial inheritance. Keywords: Autosomal dominant deafness, Heterochromia, Pigmentation anomalies, Waardenburg syndrome INTRODUCTION normal. Her mother also had similar hypertelorism with normal hearing (Figure 2). Also there is history suggestive Waardenburg syndrome (WS) is a rare genetic disorder of of premature graying of hair in her grandmother since the neural crest development characterized by varying degrees age of 15 years.