Univariate and Multivariate Skewness and Kurtosis 1
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Arxiv:1910.08883V3 [Stat.ML] 2 Apr 2021 in Real Data [8,9]
Nonpar MANOVA via Independence Testing Sambit Panda1;2, Cencheng Shen3, Ronan Perry1, Jelle Zorn4, Antoine Lutz4, Carey E. Priebe5 and Joshua T. Vogelstein1;2;6∗ Abstract. The k-sample testing problem tests whether or not k groups of data points are sampled from the same distri- bution. Multivariate analysis of variance (Manova) is currently the gold standard for k-sample testing but makes strong, often inappropriate, parametric assumptions. Moreover, independence testing and k-sample testing are tightly related, and there are many nonparametric multivariate independence tests with strong theoretical and em- pirical properties, including distance correlation (Dcorr) and Hilbert-Schmidt-Independence-Criterion (Hsic). We prove that universally consistent independence tests achieve universally consistent k-sample testing, and that k- sample statistics like Energy and Maximum Mean Discrepancy (MMD) are exactly equivalent to Dcorr. Empirically evaluating these tests for k-sample-scenarios demonstrates that these nonparametric independence tests typically outperform Manova, even for Gaussian distributed settings. Finally, we extend these non-parametric k-sample- testing procedures to perform multiway and multilevel tests. Thus, we illustrate the existence of many theoretically motivated and empirically performant k-sample-tests. A Python package with all independence and k-sample tests called hyppo is available from https://hyppo.neurodata.io/. 1 Introduction A fundamental problem in statistics is the k-sample testing problem. Consider the p p two-sample problem: we obtain two datasets ui 2 R for i = 1; : : : ; n and vj 2 R for j = 1; : : : ; m. Assume each ui is sampled independently and identically (i.i.d.) from FU and that each vj is sampled i.i.d. -
Efficient Estimation of Parameters of the Negative Binomial Distribution
E±cient Estimation of Parameters of the Negative Binomial Distribution V. SAVANI AND A. A. ZHIGLJAVSKY Department of Mathematics, Cardi® University, Cardi®, CF24 4AG, U.K. e-mail: SavaniV@cardi®.ac.uk, ZhigljavskyAA@cardi®.ac.uk (Corresponding author) Abstract In this paper we investigate a class of moment based estimators, called power method estimators, which can be almost as e±cient as maximum likelihood estima- tors and achieve a lower asymptotic variance than the standard zero term method and method of moments estimators. We investigate di®erent methods of implementing the power method in practice and examine the robustness and e±ciency of the power method estimators. Key Words: Negative binomial distribution; estimating parameters; maximum likelihood method; e±ciency of estimators; method of moments. 1 1. The Negative Binomial Distribution 1.1. Introduction The negative binomial distribution (NBD) has appeal in the modelling of many practical applications. A large amount of literature exists, for example, on using the NBD to model: animal populations (see e.g. Anscombe (1949), Kendall (1948a)); accident proneness (see e.g. Greenwood and Yule (1920), Arbous and Kerrich (1951)) and consumer buying behaviour (see e.g. Ehrenberg (1988)). The appeal of the NBD lies in the fact that it is a simple two parameter distribution that arises in various di®erent ways (see e.g. Anscombe (1950), Johnson, Kotz, and Kemp (1992), Chapter 5) often allowing the parameters to have a natural interpretation (see Section 1.2). Furthermore, the NBD can be implemented as a distribution within stationary processes (see e.g. Anscombe (1950), Kendall (1948b)) thereby increasing the modelling potential of the distribution. -
1 One Parameter Exponential Families
1 One parameter exponential families The world of exponential families bridges the gap between the Gaussian family and general dis- tributions. Many properties of Gaussians carry through to exponential families in a fairly precise sense. • In the Gaussian world, there exact small sample distributional results (i.e. t, F , χ2). • In the exponential family world, there are approximate distributional results (i.e. deviance tests). • In the general setting, we can only appeal to asymptotics. A one-parameter exponential family, F is a one-parameter family of distributions of the form Pη(dx) = exp (η · t(x) − Λ(η)) P0(dx) for some probability measure P0. The parameter η is called the natural or canonical parameter and the function Λ is called the cumulant generating function, and is simply the normalization needed to make dPη fη(x) = (x) = exp (η · t(x) − Λ(η)) dP0 a proper probability density. The random variable t(X) is the sufficient statistic of the exponential family. Note that P0 does not have to be a distribution on R, but these are of course the simplest examples. 1.0.1 A first example: Gaussian with linear sufficient statistic Consider the standard normal distribution Z e−z2=2 P0(A) = p dz A 2π and let t(x) = x. Then, the exponential family is eη·x−x2=2 Pη(dx) / p 2π and we see that Λ(η) = η2=2: eta= np.linspace(-2,2,101) CGF= eta**2/2. plt.plot(eta, CGF) A= plt.gca() A.set_xlabel(r'$\eta$', size=20) A.set_ylabel(r'$\Lambda(\eta)$', size=20) f= plt.gcf() 1 Thus, the exponential family in this setting is the collection F = fN(η; 1) : η 2 Rg : d 1.0.2 Normal with quadratic sufficient statistic on R d As a second example, take P0 = N(0;Id×d), i.e. -
On the Meaning and Use of Kurtosis
Psychological Methods Copyright 1997 by the American Psychological Association, Inc. 1997, Vol. 2, No. 3,292-307 1082-989X/97/$3.00 On the Meaning and Use of Kurtosis Lawrence T. DeCarlo Fordham University For symmetric unimodal distributions, positive kurtosis indicates heavy tails and peakedness relative to the normal distribution, whereas negative kurtosis indicates light tails and flatness. Many textbooks, however, describe or illustrate kurtosis incompletely or incorrectly. In this article, kurtosis is illustrated with well-known distributions, and aspects of its interpretation and misinterpretation are discussed. The role of kurtosis in testing univariate and multivariate normality; as a measure of departures from normality; in issues of robustness, outliers, and bimodality; in generalized tests and estimators, as well as limitations of and alternatives to the kurtosis measure [32, are discussed. It is typically noted in introductory statistics standard deviation. The normal distribution has a kur- courses that distributions can be characterized in tosis of 3, and 132 - 3 is often used so that the refer- terms of central tendency, variability, and shape. With ence normal distribution has a kurtosis of zero (132 - respect to shape, virtually every textbook defines and 3 is sometimes denoted as Y2)- A sample counterpart illustrates skewness. On the other hand, another as- to 132 can be obtained by replacing the population pect of shape, which is kurtosis, is either not discussed moments with the sample moments, which gives or, worse yet, is often described or illustrated incor- rectly. Kurtosis is also frequently not reported in re- ~(X i -- S)4/n search articles, in spite of the fact that virtually every b2 (•(X i - ~')2/n)2' statistical package provides a measure of kurtosis. -
A Family of Skew-Normal Distributions for Modeling Proportions and Rates with Zeros/Ones Excess
S S symmetry Article A Family of Skew-Normal Distributions for Modeling Proportions and Rates with Zeros/Ones Excess Guillermo Martínez-Flórez 1, Víctor Leiva 2,* , Emilio Gómez-Déniz 3 and Carolina Marchant 4 1 Departamento de Matemáticas y Estadística, Facultad de Ciencias Básicas, Universidad de Córdoba, Montería 14014, Colombia; [email protected] 2 Escuela de Ingeniería Industrial, Pontificia Universidad Católica de Valparaíso, 2362807 Valparaíso, Chile 3 Facultad de Economía, Empresa y Turismo, Universidad de Las Palmas de Gran Canaria and TIDES Institute, 35001 Canarias, Spain; [email protected] 4 Facultad de Ciencias Básicas, Universidad Católica del Maule, 3466706 Talca, Chile; [email protected] * Correspondence: [email protected] or [email protected] Received: 30 June 2020; Accepted: 19 August 2020; Published: 1 September 2020 Abstract: In this paper, we consider skew-normal distributions for constructing new a distribution which allows us to model proportions and rates with zero/one inflation as an alternative to the inflated beta distributions. The new distribution is a mixture between a Bernoulli distribution for explaining the zero/one excess and a censored skew-normal distribution for the continuous variable. The maximum likelihood method is used for parameter estimation. Observed and expected Fisher information matrices are derived to conduct likelihood-based inference in this new type skew-normal distribution. Given the flexibility of the new distributions, we are able to show, in real data scenarios, the good performance of our proposal. Keywords: beta distribution; centered skew-normal distribution; maximum-likelihood methods; Monte Carlo simulations; proportions; R software; rates; zero/one inflated data 1. -
Multivariate Chemometrics As a Strategy to Predict the Allergenic Nature of Food Proteins
S S symmetry Article Multivariate Chemometrics as a Strategy to Predict the Allergenic Nature of Food Proteins Miroslava Nedyalkova 1 and Vasil Simeonov 2,* 1 Department of Inorganic Chemistry, Faculty of Chemistry and Pharmacy, University of Sofia, 1 James Bourchier Blvd., 1164 Sofia, Bulgaria; [email protected]fia.bg 2 Department of Analytical Chemistry, Faculty of Chemistry and Pharmacy, University of Sofia, 1 James Bourchier Blvd., 1164 Sofia, Bulgaria * Correspondence: [email protected]fia.bg Received: 3 September 2020; Accepted: 21 September 2020; Published: 29 September 2020 Abstract: The purpose of the present study is to develop a simple method for the classification of food proteins with respect to their allerginicity. The methods applied to solve the problem are well-known multivariate statistical approaches (hierarchical and non-hierarchical cluster analysis, two-way clustering, principal components and factor analysis) being a substantial part of modern exploratory data analysis (chemometrics). The methods were applied to a data set consisting of 18 food proteins (allergenic and non-allergenic). The results obtained convincingly showed that a successful separation of the two types of food proteins could be easily achieved with the selection of simple and accessible physicochemical and structural descriptors. The results from the present study could be of significant importance for distinguishing allergenic from non-allergenic food proteins without engaging complicated software methods and resources. The present study corresponds entirely to the concept of the journal and of the Special issue for searching of advanced chemometric strategies in solving structural problems of biomolecules. Keywords: food proteins; allergenicity; multivariate statistics; structural and physicochemical descriptors; classification 1. -
Tests Based on Skewness and Kurtosis for Multivariate Normality
Communications for Statistical Applications and Methods DOI: http://dx.doi.org/10.5351/CSAM.2015.22.4.361 2015, Vol. 22, No. 4, 361–375 Print ISSN 2287-7843 / Online ISSN 2383-4757 Tests Based on Skewness and Kurtosis for Multivariate Normality Namhyun Kim1;a aDepartment of Science, Hongik University, Korea Abstract A measure of skewness and kurtosis is proposed to test multivariate normality. It is based on an empirical standardization using the scaled residuals of the observations. First, we consider the statistics that take the skewness or the kurtosis for each coordinate of the scaled residuals. The null distributions of the statistics converge very slowly to the asymptotic distributions; therefore, we apply a transformation of the skewness or the kurtosis to univariate normality for each coordinate. Size and power are investigated through simulation; consequently, the null distributions of the statistics from the transformed ones are quite well approximated to asymptotic distributions. A simulation study also shows that the combined statistics of skewness and kurtosis have moderate sensitivity of all alternatives under study, and they might be candidates for an omnibus test. Keywords: Goodness of fit tests, multivariate normality, skewness, kurtosis, scaled residuals, empirical standardization, power comparison 1. Introduction Classical multivariate analysis techniques require the assumption of multivariate normality; conse- quently, there are numerous test procedures to assess the assumption in the literature. For a gen- eral review, some references are Henze (2002), Henze and Zirkler (1990), Srivastava and Mudholkar (2003), and Thode (2002, Ch.9). For comparative studies in power, we refer to Farrell et al. (2007), Horswell and Looney (1992), Mecklin and Mundfrom (2005), and Romeu and Ozturk (1993). -
In the Term Multivariate Analysis Has Been Defined Variously by Different Authors and Has No Single Definition
Newsom Psy 522/622 Multiple Regression and Multivariate Quantitative Methods, Winter 2021 1 Multivariate Analyses The term "multivariate" in the term multivariate analysis has been defined variously by different authors and has no single definition. Most statistics books on multivariate statistics define multivariate statistics as tests that involve multiple dependent (or response) variables together (Pituch & Stevens, 2105; Tabachnick & Fidell, 2013; Tatsuoka, 1988). But common usage by some researchers and authors also include analysis with multiple independent variables, such as multiple regression, in their definition of multivariate statistics (e.g., Huberty, 1994). Some analyses, such as principal components analysis or canonical correlation, really have no independent or dependent variable as such, but could be conceived of as analyses of multiple responses. A more strict statistical definition would define multivariate analysis in terms of two or more random variables and their multivariate distributions (e.g., Timm, 2002), in which joint distributions must be considered to understand the statistical tests. I suspect the statistical definition is what underlies the selection of analyses that are included in most multivariate statistics books. Multivariate statistics texts nearly always focus on continuous dependent variables, but continuous variables would not be required to consider an analysis multivariate. Huberty (1994) describes the goals of multivariate statistical tests as including prediction (of continuous outcomes or -
Characterization of the Bivariate Negative Binomial Distribution James E
Journal of the Arkansas Academy of Science Volume 21 Article 17 1967 Characterization of the Bivariate Negative Binomial Distribution James E. Dunn University of Arkansas, Fayetteville Follow this and additional works at: http://scholarworks.uark.edu/jaas Part of the Other Applied Mathematics Commons Recommended Citation Dunn, James E. (1967) "Characterization of the Bivariate Negative Binomial Distribution," Journal of the Arkansas Academy of Science: Vol. 21 , Article 17. Available at: http://scholarworks.uark.edu/jaas/vol21/iss1/17 This article is available for use under the Creative Commons license: Attribution-NoDerivatives 4.0 International (CC BY-ND 4.0). Users are able to read, download, copy, print, distribute, search, link to the full texts of these articles, or use them for any other lawful purpose, without asking prior permission from the publisher or the author. This Article is brought to you for free and open access by ScholarWorks@UARK. It has been accepted for inclusion in Journal of the Arkansas Academy of Science by an authorized editor of ScholarWorks@UARK. For more information, please contact [email protected], [email protected]. Journal of the Arkansas Academy of Science, Vol. 21 [1967], Art. 17 77 Arkansas Academy of Science Proceedings, Vol.21, 1967 CHARACTERIZATION OF THE BIVARIATE NEGATIVE BINOMIAL DISTRIBUTION James E. Dunn INTRODUCTION The univariate negative binomial distribution (also known as Pascal's distribution and the Polya-Eggenberger distribution under vari- ous reparameterizations) has recently been characterized by Bartko (1962). Its broad acceptance and applicability in such diverse areas as medicine, ecology, and engineering is evident from the references listed there. -
Approximating the Distribution of the Product of Two Normally Distributed Random Variables
S S symmetry Article Approximating the Distribution of the Product of Two Normally Distributed Random Variables Antonio Seijas-Macías 1,2 , Amílcar Oliveira 2,3 , Teresa A. Oliveira 2,3 and Víctor Leiva 4,* 1 Departamento de Economía, Universidade da Coruña, 15071 A Coruña, Spain; [email protected] 2 CEAUL, Faculdade de Ciências, Universidade de Lisboa, 1649-014 Lisboa, Portugal; [email protected] (A.O.); [email protected] (T.A.O.) 3 Departamento de Ciências e Tecnologia, Universidade Aberta, 1269-001 Lisboa, Portugal 4 Escuela de Ingeniería Industrial, Pontificia Universidad Católica de Valparaíso, Valparaíso 2362807, Chile * Correspondence: [email protected] or [email protected] Received: 21 June 2020; Accepted: 18 July 2020; Published: 22 July 2020 Abstract: The distribution of the product of two normally distributed random variables has been an open problem from the early years in the XXth century. First approaches tried to determinate the mathematical and statistical properties of the distribution of such a product using different types of functions. Recently, an improvement in computational techniques has performed new approaches for calculating related integrals by using numerical integration. Another approach is to adopt any other distribution to approximate the probability density function of this product. The skew-normal distribution is a generalization of the normal distribution which considers skewness making it flexible. In this work, we approximate the distribution of the product of two normally distributed random variables using a type of skew-normal distribution. The influence of the parameters of the two normal distributions on the approximation is explored. When one of the normally distributed variables has an inverse coefficient of variation greater than one, our approximation performs better than when both normally distributed variables have inverse coefficients of variation less than one. -
Review on Generalized Pearson System of Probability Distributions
Review on Generalized Pearson System of Probability Distributions M. Shakil, Ph.D. † B.M. Golam Kibria, Ph.D. ‡ J. N. Singh, Ph.D. § Abstract In recent years, many researchers have considered a generalization of the Pearson system, known as generalized Pearson system of probability distributions. In this paper, we have reviewed these new classes of continuous probability distribution which can be generated from the generalized Pearson system of differential equation. We have identified as many as 15 such distributions. It is hoped that the proposed attempt will be helpful in designing a new approach of unifying different families of distributions based on the generalized Pearson differential equation, including the estimation of the parameters and inferences about the parameters. 1. Introduction: Pearson System of Distributions A continuous distribution belongs to the Pearson system if its pdf (probability density function) f satisfies a differential equation of the form 1 df (x) x + a X = − , (1) f ()x dx b x 2 + c x + d where a , b , c , and d are real parameters such that f is a pdf . The shapes of the pdf depend on the values of these parameters, based on which Pearson (1895, 1901) classified these distributions into a number of types known as Pearson Types I – VI. Later in another paper, Pearson (1916) defined more special cases and subtypes known as Pearson Types VII - XII. Many well- known distributions are special cases of Pearson Type distributions which include Normal and Student’s t distributions (Pearson Type VII), Beta distribution (Pearson Type I), Gamma distribution (Pearson Type III) among others. -
Nonparametric Multivariate Kurtosis and Tailweight Measures
Nonparametric Multivariate Kurtosis and Tailweight Measures Jin Wang1 Northern Arizona University and Robert Serfling2 University of Texas at Dallas November 2004 – final preprint version, to appear in Journal of Nonparametric Statistics, 2005 1Department of Mathematics and Statistics, Northern Arizona University, Flagstaff, Arizona 86011-5717, USA. Email: [email protected]. 2Department of Mathematical Sciences, University of Texas at Dallas, Richardson, Texas 75083- 0688, USA. Email: [email protected]. Website: www.utdallas.edu/∼serfling. Support by NSF Grant DMS-0103698 is gratefully acknowledged. Abstract For nonparametric exploration or description of a distribution, the treatment of location, spread, symmetry and skewness is followed by characterization of kurtosis. Classical moment- based kurtosis measures the dispersion of a distribution about its “shoulders”. Here we con- sider quantile-based kurtosis measures. These are robust, are defined more widely, and dis- criminate better among shapes. A univariate quantile-based kurtosis measure of Groeneveld and Meeden (1984) is extended to the multivariate case by representing it as a transform of a dispersion functional. A family of such kurtosis measures defined for a given distribution and taken together comprises a real-valued “kurtosis functional”, which has intuitive appeal as a convenient two-dimensional curve for description of the kurtosis of the distribution. Several multivariate distributions in any dimension may thus be compared with respect to their kurtosis in a single two-dimensional plot. Important properties of the new multivariate kurtosis measures are established. For example, for elliptically symmetric distributions, this measure determines the distribution within affine equivalence. Related tailweight measures, influence curves, and asymptotic behavior of sample versions are also discussed.