Chapter 10 Theories of Electronic Molecular Structure
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Understanding the Bonding of Second Period Diatomic Molecules Spdf Vs MCAS
Understanding the Bonding of Second Period Diatomic Molecules Spdf vs MCAS By Joel M Williams (text and images © 2013) The html version with updates and higher resolution images is at the author’s website (click here) Abstract The current spdf and MO modeling of chemical molecules are well-established, but do so by continuing to assume that non-classical physics is operating. The MCAS electron orbital model is an alternate particulate model based on classical physics. This paper describes its application to the diatomic molecules of the second period of the periodic table. In doing so, it addresses their molecular electrostatics, bond strengths, and electron affinities. Particular attention is given to the anomalies of the carbon diatom. Questions are raised about the sensibleness of the spdf model’s spatial ability to contain two electrons on an axis between diatoms and its ability to form π-bonds from parallel p-orbitals located over the nuclei of each atom. Nitrogen, carbon monoxide, oxygen, and fluorine all have the same inter-nuclei bonding: all “triple bonds” of varying strength caused by different numbers of anti-bonding electrons. The spdf model was devised for single atoms by physicists and mathematicians. Kowtowing to them, chemists produce hybrid orbitals to explain how atoms could actually form molecules. Drawing these hybrids and meshing them on paper might look great, but, constrained to measured interatomic physical dimensions and electrostatic interactions, bonding based on the spdf-hybrids (sp, sp2, sp3) is illogical. To have even one electron occupy the “bond” region between the nuclei of diatomic molecules, at the expense of reduced coverage elsewhere, does not make sense for stable molecules. -
Discharge Plasmas of Molecular Gases
/ J ¥4~r~~~: 'o j~ ~7 ~,~U;~I u t= ~]f~LL*~ ~~~~~~; 4. Isotope Separation in Discharge Plasmas of Molecular Gases EZOUBTCHENKO, Alexandre N.t, AKATSUKA Hiroshi and SUZUKI Masaaki Research Laboratory for Nuclear Reactors, Tokyo Institute of Technology, Tokyo 152-8550, Japan (Received 25 December 1997) Abstract We review the theoretical principles and the experimental methods of isotope separation achieved through the use of discharge plasmas of molecular gases. Isotope separation has been accomplished in various plasma chemical reactions. It is experimentally and theoretically shown that a state of non- equilibrium in the plasmas, especially in the vibrational distribution functions, is essential for the isotope redistribution in the reagents and products. Examples of the reactions, together with the isotope separ- ation factors known up to the present time, are shown to separate isotopic species of carbon, nitrogen and oxygen molecules in the plasma phase, generated by glow discharge and microwave discharge. Keywords: isotope separation, vibrational nonequilibrium, glow discharge, microwave discharge, plasma chemistry 4.1 Introduction isotopic species will be redistributed between the rea- Plasmas generated by electric discharge of molecu- gents and the products. We can elaborate a new lar gases under moderate pressures (10 Torr < p < method of the plasma isotope separation for light ele- 200 Torr) are usually in a state of nonequilibrium. We ments . can define various temperatures according to the kine- There were a few experimental studies of isotope tics of various particles in such plasmas, for example, separation phenomena in the nonequilibrium electric electron temperature ( T*), gas translational temperature discharge. Semiokhin et al. measured C02 enrichment ( To), gas rotational temperature ( TR) and vibrational in i3C02 and 12C160180 with a separation factor a ~ temperature ( Tv), where the relationships T* > Tv ;~ 1.01 in the C02 Silent (barrier) discharge in the pres- TR- To usually hold. -
©2018 Alexander Hook ALL RIGHTS RESERVED
©2018 Alexander Hook ALL RIGHTS RESERVED A DFT STUDY OF HYDROGEN ABSTRACTION FROM LIGHT ALKANES: Pt ALLOY DEHYDROGENATION CATALYSTS AND TIO2 STEAM REFORMING CATALYSTS By ALEXANDER HOOK A dissertation submitted to the School of Graduate Studies Rutgers, The State University of New Jersey In partial fulfillment of the requirements For the degree of Doctor of Philosophy Graduate Program in Chemical and Biochemical Engineering Written under the direction of Fuat E. Celik And approved by __________________________ __________________________ __________________________ __________________________ New Brunswick, New Jersey May, 2018 ABSTRACT OF THE DISSERTATION A DFT STUDY OF HYDROGEN ABSTRACTION FROM LIGHT ALKANES: Pt ALLOY DEHYDROGENATION CATALYSTS AND TiO2 STEAM REFORMING CATALYSTS By ALEC HOOK Dissertation Director: Fuat E. Celik Sustainable energy production is one of the biggest challenges of the 21st century. This includes effective utilization of carbon-neutral energy resources as well as clean end-use application that do not emit CO2 and other pollutants. Hydrogen gas can potentially solve the latter problem, as a clean burning fuel with very high thermodynamic energy conversion efficiency in fuel cells. In this work we will be discussing two methods of obtaining hydrogen. The first is as a byproduct of light alkane dehydrogenation where we obtain a high value olefin along with hydrogen gas. The second is in methane steam reforming where hydrogen is the primary product. Chapter 1 begins by introducing the reader to the current state of the energy industry. Afterwards there is an overview of what density functional theory (DFT) is and how this computational technique can elucidate and complement laboratory experiments. It will also contain the general parameters and methodology of the VASP software package that runs the DFT calculations. -
Chapter 4 Introduction to Molecular QM
Chapter 4 Introduction to Molecular QM Contents 4.1 Born-Oppenheimer approximation ....................76 4.2 Molecular orbitals .................................. ..77 + 4.3 Hydrogen molecular ion H2 ..........................78 4.4 The structures of diatomic molecules ..................83 Basic Questions A. What is Born-Oppenheimer approximation? B. What are molecular orbitals? C. Is He2 a stable molecule? 75 76 CHAPTER 4. INTRODUCTION TO MOLECULAR QM 4.1 Born-Oppenheimer approximation and electron terms Consider a general many-body Hamiltonian of a molecule Hˆ = Hˆe + Hˆn + Hˆen, where Hˆe is the Hamiltonian of many-electrons in the molecule, Hˆn is that of nuclei, and Hˆen describes the interaction potential between the two subsystems. As nuclear mass is much larger (about 2000 times larger) than electron mass, it is a good ap- proximation to ignore nuclear’s motion and focus on the dynamics of electrons for given nuclear configuration. We use general coordinate x =(x1, x2, ...) for all electrons (spatial and spin coor- dinates) and X = (X1,X2, ...) for all nuclei’s. The total wavefunction of a molecule is separatable as Ψ(x, X)=Ψe(x, X)Ψn(X) . If we approximate HˆnΨe(x, X) Ψe(x, X)Hˆn (the noncommuting kinetic part is proportional to 1/M , where M ≈is nuclear mass), we have separatable Schr¨odinger equations, namely (Hˆe + Hˆen)Ψe(x, X)= EΨe(x, X), E = E(X) for electrons motion with nuclei’s coordinates X as parameters, and [Hˆn + E(X)]Ψn(X)= EnΨn(X) for the nuclei motion. This is called Born-Oppenheimer approximation. Notice that E = E(X) plays a role of potential in the nuclei Schr¨odinger equation. -
Eliminating Ground-State Dipole Moments in Quantum Optics
Eliminating ground-state dipole moments in quantum optics via canonical transformation Gediminas Juzeliunas* Luciana Dávila Romero† and David L. Andrews† *Institute of Theoretical Physics and Astronomy, Vilnius University, A. Goštauto 12, 2600 Vilnius, Lithuania †School of Chemical Sciences and Pharmacy, University of East Anglia, Norwich NR4 7TJ, United Kingdom Abstract By means of a canonical transformation it is shown how it is possible to recast the equations for molecular nonlinear optics to completely eliminate ground-state static dipole coupling terms. Such dipoles can certainly play a highly important role in nonlinear optical response – but equations derived by standard methods, in which these dipoles emerge only as special cases of transition moments, prove unnecessarily complex. It has been shown that the elimination of ground-state static dipoles in favor of dipole shifts results in a considerable simplification in form of the nonlinear optical susceptibilities. In a fully quantum theoretical treatment the validity of such a procedure has previously been verified using an expedient algorithm, whose defense was afforded only by a highly intricate proof. In this paper it is shown how a canonical transformation method entirely circumvents such an approach; it also affords new insights into the formulation of quantum field interactions. 2 1. Introduction In recent years it has become increasingly evident that permanent (static) electric dipoles play a highly important role in the nonlinear optical response of molecular systems [1, 2]. Most molecules are intrinsically polar by nature, and calculation of their optical susceptibilities with regard only to transition dipole moments can produce results that are significantly in error [3, 4]. -
Geometrical Terms in the Effective Hamiltonian for Rotor Molecules
Geometrical terms in the effective Hamiltonian for rotor molecules Ian G. Moss∗ School of Mathematics and Statistics, Newcastle University, Newcastle Upon Tyne, NE1 7RU, UK (Dated: September 21, 2021) An analogy between asymmetric rotor molecules and anisotropic cosmology can be used to calcu- late new centrifugal distortion terms in the effective potential of asymmetric rotor molecules which have no internal 3-fold symmetry. The torsional potential picks up extra cos α and cos 2α contri- butions, which are comparable to corrections to the momentum terms in methanol and other rotor molecules with isotope replacements. arXiv:1303.6111v1 [physics.chem-ph] 25 Mar 2013 ∗ [email protected] 2 Geometrical ideas can often be used to find underlying order in complex systems. In this paper we shall examine some of the geometry associated with molecular systems with an internal rotational degree of freedom, and make use of a mathematical analogy between these rotor molecules and a class of anisotropic cosmological models to evaluate new torsional potential terms in the effective molecular Hamiltonian. An effective Hamiltonian can be constructed for any dynamical system in which the internal forces can be divided into a strong constraining forces and weaker non-constraining forces. The surface of constraint inherits a natural geometry induced by the kinetic energy functional. This geometry can be described in generalised coordinates qa by a metric gab . The energy levels of the corresponding quantum system divide into energy bands separated by energy gaps. A generalisation of the Born-oppenheimer approximation gives an effective Hamiltonian for an individual energy band. Working up to order ¯h2, the effective quantum Hamiltonian for the reduced theory has a simple form [1{4] 1 H = jgj−1=2p jgj1=2gabp + V + V + V ; (1) eff 2 a b GBO R a ab where pa = −i¯h@=@q , g is the inverse of the metric, jgj its determinant and V is the restriction of the potential of the original system to the constraint surface. -
Solving the Schrödinger Equation of Atoms and Molecules
Solving the Schrödinger equation of atoms and molecules: Chemical-formula theory, free-complement chemical-formula theory, and intermediate variational theory Hiroshi Nakatsuji, Hiroyuki Nakashima, and Yusaku I. Kurokawa Citation: The Journal of Chemical Physics 149, 114105 (2018); doi: 10.1063/1.5040376 View online: https://doi.org/10.1063/1.5040376 View Table of Contents: http://aip.scitation.org/toc/jcp/149/11 Published by the American Institute of Physics THE JOURNAL OF CHEMICAL PHYSICS 149, 114105 (2018) Solving the Schrodinger¨ equation of atoms and molecules: Chemical-formula theory, free-complement chemical-formula theory, and intermediate variational theory Hiroshi Nakatsuji,a) Hiroyuki Nakashima, and Yusaku I. Kurokawa Quantum Chemistry Research Institute, Kyoto Technoscience Center 16, 14 Yoshida Kawaramachi, Sakyo-ku, Kyoto 606-8305, Japan (Received 16 May 2018; accepted 28 August 2018; published online 20 September 2018) Chemistry is governed by the principle of quantum mechanics as expressed by the Schrodinger¨ equation (SE) and Dirac equation (DE). The exact general theory for solving these fundamental equations is therefore a key for formulating accurately predictive theory in chemical science. The free-complement (FC) theory for solving the SE of atoms and molecules proposed by one of the authors is such a general theory. On the other hand, the working theory most widely used in chemistry is the chemical formula that refers to the molecular structural formula and chemical reaction formula, collectively. There, the central concepts are the local atomic concept, transferability, and from-atoms- to-molecule concept. Since the chemical formula is the most successful working theory in chemistry ever existed, we formulate our FC theory to have the structure reflecting the chemical formula. -
Diatomic Carbon Measurements with Laser-Induced Breakdown Spectroscopy
University of Tennessee, Knoxville TRACE: Tennessee Research and Creative Exchange Masters Theses Graduate School 5-2015 Diatomic Carbon Measurements with Laser-Induced Breakdown Spectroscopy Michael Jonathan Witte University of Tennessee - Knoxville, [email protected] Follow this and additional works at: https://trace.tennessee.edu/utk_gradthes Part of the Atomic, Molecular and Optical Physics Commons, and the Plasma and Beam Physics Commons Recommended Citation Witte, Michael Jonathan, "Diatomic Carbon Measurements with Laser-Induced Breakdown Spectroscopy. " Master's Thesis, University of Tennessee, 2015. https://trace.tennessee.edu/utk_gradthes/3423 This Thesis is brought to you for free and open access by the Graduate School at TRACE: Tennessee Research and Creative Exchange. It has been accepted for inclusion in Masters Theses by an authorized administrator of TRACE: Tennessee Research and Creative Exchange. For more information, please contact [email protected]. To the Graduate Council: I am submitting herewith a thesis written by Michael Jonathan Witte entitled "Diatomic Carbon Measurements with Laser-Induced Breakdown Spectroscopy." I have examined the final electronic copy of this thesis for form and content and recommend that it be accepted in partial fulfillment of the equirr ements for the degree of Master of Science, with a major in Physics. Christian G. Parigger, Major Professor We have read this thesis and recommend its acceptance: Horace Crater, Joseph Majdalani Accepted for the Council: Carolyn R. Hodges Vice Provost and Dean of the Graduate School (Original signatures are on file with official studentecor r ds.) Diatomic Carbon Measurements with Laser-Induced Breakdown Spectroscopy A Thesis Presented for the Master of Science Degree The University of Tennessee, Knoxville Michael Jonathan Witte May 2015 c by Michael Jonathan Witte, 2015 All Rights Reserved. -
Fullerenes and Pahs: a Novel Model Explains Their Formation Via
Fullerenes and PAHs: A Novel Model Explains their Formation via Sequential Cycloaddition Reactions Involving C2 Dimers Sylvain L. Smadja [email protected] 10364 Almayo Ave., Suite 304 Los Angeles, CA 90064 “Cove” region closure C20 bowl + 10C2 creates pentagonal ring C50 + 5C2 [2 + 2 + 2] [4 + 2] Cycloadditions Cycloadditions Cage 5C 5C 2 2 closure “Cove” region C40 C50 C60 Buckministerfullerene ABSTRACT: Based on a new understanding of the nature of the bonding in the C2 dimer, a novel bottom-up model is offered that can explain the growth processes of fullerenes and polycyclic aromatic hydrocarbons (PAHs). It is shown how growth sequences involving C2 dimers, that take place in carbon vapor, combustion systems, and the ISM, could give rise to a variety of bare carbon clusters. Among the bare carbon clusters thus formed, some could lead to fullerenes, while others, after hydrogenation, could lead to PAHs. We propose that the formation of hexagonal rings present in these bare carbon clusters are the result of [2+2+2] and [4+2] cycloaddition reactions that involve C2 dimers. In the C60 and C70 fullerenes, each of the twelve pentagons is surrounded by five hexagons and thereby “isolated” from each other. To explain why, we suggest that in bowl-shaped clusters the pentagons can form as the consequence of closures of “cove regions” that exist between hexagonal rings, and that they can also form during cage-closure, which results in the creation of six “isolated” pentagonal rings, and five hexagonal rings. The proposed growth mechanisms can account for the formation of fullerene isomers without the need to invoke the widely used Stone-Wales rearrangement. -
(12) United States Patent (10) Patent No.: US 8,753,759 B2 Liao (45) Date of Patent: *Jun
USOO8753759B2 (12) United States Patent (10) Patent No.: US 8,753,759 B2 Liao (45) Date of Patent: *Jun. 17, 2014 (54) BATTERY WITH CHLOROPHYLL 5,270,137 A * 12/1993 Kubota ......................... 429,249 ELECTRODE 5,928,714 A * 7/1999 Nunome et al. ........... 427,126.3 6,511,774 B1 1/2003 Tsukuda et al. 6,905,798 B2 6/2005 Tsukuda et al. (75) Inventor: Chungpin Liao, Taichung (TW) 7,405,172 B2 7/2008 Shigematsu et al. 2009/0325067 A1 12/2009 Liao et al. (73) Assignee: iNNOT BioEnergy Holding Co., George Town (KY) FOREIGN PATENT DOCUMENTS *) Notice: Subject to anyy disclaimer, the term of this TW I288495 B 10/2007 patent is extended or adjusted under 35 U.S.C. 154(b) by 460 days. OTHER PUBLICATIONS This patent is Subject to a terminal dis Dryhurst, Glenn, “Electrochemistry of Biological Molecules' claimer. Elsevier, Inc. (1977), pp. 408-415.* (21) Appl. No.: 13/075,909 * cited by examiner (22) Filed: Mar. 30, 2011 (65) Prior Publication Data Primary Examiner — Zachary Best (74) Attorney, Agent, or Firm — Novak Druce Connolly US 2012/O 148898A1 Jun. 14, 2012 Bove + Quigg LLP (30) Foreign Application Priority Data (57) ABSTRACT Dec. 13, 2010 (CN) .......................... 2010 1 0.585281 An exemplary battery is provided in the present invention. (51) Int. Cl. The battery includes a current collector, a positive-electrode HOLM 8/6 (2006.01) structure, a separation structure, a negative-electrode struc (52) U.S. Cl. ture and a housing. The positive-electrode structure, the sepa USPC ............................. 429/2; 429/218.1; 429/212 ration structure, the negative-electrode structure are encircled (58) Field of Classification Search in sequence inside of the housing. -
Effective Hamiltonians: Theory and Application
Autumn School on Correlated Electrons Effective Hamiltonians: Theory and Application Frank Neese, Vijay Chilkuri, Lucas Lang MPI für Kohlenforschung Kaiser-Wilhelm Platz 1 Mülheim an der Ruhr What is and why care about effective Hamiltonians? Hamiltonians and Eigensystems ★ Let us assume that we have a Hamiltonian that works on a set of variables x1 .. xN. H ,..., (x1 xN ) ★ Then its eigenfunctions (time-independent) are also functions of x1 ... xN. H x ,..., x Ψ x ,..., x = E Ψ x ,..., x ( 1 N ) I ( 1 N ) I I ( 1 N ) ★ The eigenvalues of the Hamiltonian form a „spectrum“ of eigenstates that is characteristic for the Hamiltonian E7 There may be multiple E6 systematic or accidental E4 E5 degeneracies among E3 the eigenvalues E0 E1 E2 Effective Hamiltonians ★ An „effective Hamiltonian“ is a Hamiltonian that acts in a reduced space and only describes a part of the eigenvalue spectrum of the true (more complete) Hamiltonian E7 E6 Part that we want to E4 E5 describe E3 E0 E1 E2 TRUE H x ,..., x Ψ x ,..., x = E Ψ x ,..., x (I=0...infinity) ( 1 N ) I ( 1 N ) I I ( 1 N ) (nearly) identical eigenvalues wanted! EFFECTIVE H Φ = E Φ eff I I I (I=0...3) Examples of Effective Hamiltonians treated here 1. The Self-Consistent Size-Consistent CI Method to treat electron correlation ‣ Pure ab initio method. ‣ Work in the basis of singly- and doubly-excited determinants ‣ Describes the effect of higher excitations 2. The Spin-Hamiltonian in EPR and NMR Spectroscopy. ‣ Leads to empirical parameters ‣ Works on fictitous effective electron (S) and nuclear (I) spins ‣ Describe the (2S+1)(2I+1) ,magnetic sublevels‘ of the electronic ground state 3. -
Variational Solutions for Resonances by a Finite-Difference Grid Method
molecules Article Variational Solutions for Resonances by a Finite-Difference Grid Method Roie Dann 1,*,† , Guy Elbaz 2,†, Jonathan Berkheim 3, Alan Muhafra 2, Omri Nitecki 4, Daniel Wilczynski 2 and Nimrod Moiseyev 4,5,* 1 The Institute of Chemistry, The Hebrew University of Jerusalem, Jerusalem 9190401, Israel 2 Faculty of Mechanical Engineering, Technion—Israel Institute of Technology, Haifa 3200003, Israel; [email protected] (G.E.); [email protected] (A.M.); [email protected] (D.W.) 3 School of Chemistry, Tel Aviv University, Tel Aviv 6997801, Israel; [email protected] 4 Schulich Faculty of Chemistry, Solid State Institute and Faculty of Physics, Technion—Israel Institute of Technology, Haifa 3200003, Israel; [email protected] 5 Solid State Institute and Faculty of Physics, Technion—Israel Institute of Technology, Haifa 3200003, Israel * Correspondence: [email protected] (R.D.); [email protected] (N.M.) † These authors contributed equally to this work. Abstract: We demonstrate that the finite difference grid method (FDM) can be simply modified to satisfy the variational principle and enable calculations of both real and complex poles of the scattering matrix. These complex poles are known as resonances and provide the energies and inverse lifetimes of the system under study (e.g., molecules) in metastable states. This approach allows incorporating finite grid methods in the study of resonance phenomena in chemistry. Possible applications include the calculation of electronic autoionization resonances which occur when ionization takes place as the bond lengths of the molecule are varied. Alternatively, the method can be applied to calculate nuclear predissociation resonances which are associated with activated Citation: Dann, R.; Elbaz, G.; complexes with finite lifetimes.