Capillary Electrochromatography: a Versatile Tool for Biochemical Analysis
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Agarose Gel Electrophoresis
Laboratory for Environmental Pathogen Research Department of Environmental Sciences University of Toledo Agarose gel electrophoresis Background information Agarose gel electrophoresis of DNA is used to determine the presence and distinguish the type of nucleic acids obtained after extraction and to analyze restriction digestion products. Desired DNA fragments can be physically isolated for various purposes such as sequencing, probe preparation, or for cloning fragments into other vectors. Both agarose and polyacrylamide gels are used for DNA analysis. Agarose gels are usually run to size larger fragments (greater than 200 bp) and polyacrylamide gels are run to size fragments less than 200 bp. Typically agarose gels are used for most purposes and polyacrylamide gels are used when small fragments, such as digests of 16S rRNA genes, are being distinguished. There are also specialty agaroses made by FMC (e.g., Metaphor) for separating small fragments. Regular agarose gels may range in concentration from 0.6 to 3.0%. Pouring gels at less or greater than these percentages presents handling problems (e.g., 0.4% agarose for genomic DNA partial digests requires a layer of supporting 0.8% gel). For normal samples make agarose gels at 0.7%. The chart below illustrates the optimal concentrations for fragment size separation. The values listed are approximate and can vary depending on the reference that is used. If you do not know your fragment sizes then the best approach is to start with a 0.7% gel and change subsequently if the desired separation is not achieved. Nucleic acids must be stained prior to visualization. Most laboratories use ethidium bromide but other stains (e.g., SYBR green, GelStar) are available. -
J . Org. Chem., Vol. 43, No. 14, 1978 2923 A
Notes J. Org. Chem., Vol. 43, No. 14, 1978 2923 (11) Potassium ferricyanide has previously been used to convert vic-l,2-di- carboxylate groups to double bonds. See, for example, L. F. Fieser and M. J. Haddadin, J. Am. Chem. SOC., 86, 2392 (1964). The oxidative dide- carboxylation of 1,2dicarboxyiic acids is, of course, a well-known process. See inter alia (a) C. A. Grob, M. Ohta, and A. Weiss, Helv. Chirn. Acta, 41, 191 1 [ 1958); and (b) E. N. Cain, R. Vukov, and S. Masamune, J. Chern. SOC. D, 98 (1969). 1 I I L <40 26- 40- 63- 40 63 200 Rapid Chromatographic Technique for Preparative Figure 2. Silica gel particle size6 (pm):(0) rh: (0) r/(w/2). Separations with Moderate Resolution W. Clark Still,* Michael Kahn, and Abhijit Mitra Departm(7nt o/ Chemistry, Columbia Uniuersity, 1Veu York, Neu; York 10027 ReceiLied January 26, 1978 We wish to describe a simple absorption chromatography technique for the routine purification of organic compounds. 0 1.0 2 0 3.0 4.0 Large scale preparative separations are traditionally carried Figure 3. Eluant flow rate (in./min). out by tedious long column chromatography. Although the results are sometimes satisfactory, the technique is always time consuming and frequently gives poor recovery due to band tailing. These problems are especially acute when sam- ples of greater than 1 or 2 g must be separated. In recent years 41 several preparative systems have evolved which reduce sep- aration times to 1-3 h and allow the resolution of components having Al?f 1 0.05 on analytical TLC. -
Synthesis and Applications of Monolithic HPLC Columns
University of Tennessee, Knoxville TRACE: Tennessee Research and Creative Exchange Doctoral Dissertations Graduate School 8-2005 Synthesis and Applications of Monolithic HPLC Columns Chengdu Liang University of Tennessee - Knoxville Follow this and additional works at: https://trace.tennessee.edu/utk_graddiss Part of the Chemistry Commons Recommended Citation Liang, Chengdu, "Synthesis and Applications of Monolithic HPLC Columns. " PhD diss., University of Tennessee, 2005. https://trace.tennessee.edu/utk_graddiss/2233 This Dissertation is brought to you for free and open access by the Graduate School at TRACE: Tennessee Research and Creative Exchange. It has been accepted for inclusion in Doctoral Dissertations by an authorized administrator of TRACE: Tennessee Research and Creative Exchange. For more information, please contact [email protected]. To the Graduate Council: I am submitting herewith a dissertation written by Chengdu Liang entitled "Synthesis and Applications of Monolithic HPLC Columns." I have examined the final electronic copy of this dissertation for form and content and recommend that it be accepted in partial fulfillment of the requirements for the degree of Doctor of Philosophy, with a major in Chemistry. Georges A Guiochon, Major Professor We have read this dissertation and recommend its acceptance: Sheng Dai, Craig E Barnes, Michael J Sepaniak, Bin Hu Accepted for the Council: Carolyn R. Hodges Vice Provost and Dean of the Graduate School (Original signatures are on file with official studentecor r ds.) To the Graduate Council: I am submitting herewith a dissertation written by Chengdu Liang entitled, “Synthesis and applications of monolithic HPLC columns.” I have examined the final electronic copy of this dissertation for form and content and recommend that it be accepted in partial fulfillment of the requirements for the degree of Doctor of Philosophy, with a major in Chemistry. -
Monolithic Stationary Phases for Capillary Electrochromatography Based on Synthetic Polymers: Designs and Applications Frantisek Svec, Eric C
Reviews Monolithic Stationary Phases for Capillary Electrochromatography Based on Synthetic Polymers: Designs and Applications Frantisek Svec, Eric C. Peters1), David Sy´kora, Cong Yu, Jean M. J. Fre´chet* Department of Chemistry, University of California, Berkeley, CA 94720-1460, USA Ms received: September 29, 1999; accepted: November 3, 1999 Key Words: Capillary electrochromatography; monolithic columns; synthetic polymers; stationary phase Summary Monolithic materials have quickly become a well-established station- the use of a solid stationary phase and a separation mechan- ary phase format in the field of capillary electrochromatography ism characteristic of HPLC based on specific interactions of (CEC). Both the simplicity of their in situ preparation method and solutes with a stationary phase. Therefore CEC is most com- the large variety of readily available chemistries make the monolithic monly implemented by means typical of both HPLC (packed separation media an attractive alternative to capillary columns packed with particulate materials. This review summarizes the con- columns) and HPCE (use of electrophoretic instrumentation). tributions of numerous groups working in this rapidly growing area, To date, both columns and instrumentation developed specifi- with a focus on monolithic capillary columns prepared from syn- cally for CEC remain scarce. thetic polymers. Various approaches employed for the preparation of the monoliths are detailed, and where available, the material proper- Although numerous groups around the world prepare CEC ties of the resulting monolithic capillary columns are shown. Their columns using a variety of approaches, the vast majority of chromatographic performance is demonstrated by numerous separa- these efforts mimic in one way or another standard HPLC tions of different analyte mixtures in variety of modes. -
Microchip Electrophoresis
Entry Microchip Electrophoresis Sammer-ul Hassan Mechanical Engineering, University of Southampton, Southampton SO17 1BJ, UK; [email protected] Definition: Microchip electrophoresis (MCE) is a miniaturized form of capillary electrophoresis. Electrophoresis is a common technique to separate macromolecules such as nucleic acids (DNA, RNA) and proteins. This technique has become a routine method for DNA size fragmenting and separating protein mixtures in most laboratories around the world. The application of higher voltages in MCE achieves faster and efficient electrophoretic separations. Keywords: electrophoresis; microchip electrophoresis; microfluidics; microfabrications 1. Introduction Electrophoresis is an analytical technique that has been applied to resolve complex mixtures containing DNA, proteins, and other chemical or biological species. Since its discovery in the 1930s by Arne [1], traditional slab gel electrophoresis (SGE) has been widely used until today. Meanwhile, new separation techniques based on electrophoresis continue to be developed in the 21st century, especially in life sciences. Capillary electrophoresis (CE) provides a higher resolution of the separated analytes and allows the automation of the operation. Thus, it has been widely used to characterize proteins and peptides [2], biopharmaceutical drugs [3], nucleic acids [4], and the genome [5]. The development of microfabrication techniques has led to the further miniaturization of electrophoresis known Citation: Hassan, S.-u. Microchip as microchip electrophoresis (MCE). MCE offers many advantages over conventional Electrophoresis. Encyclopedia 2021, 1, capillary electrophoresis techniques such as the integration of different separation functions 30–41. https://dx.doi.org/10.3390/ onto the chip, the consumption of small amounts of sample and reagents, faster analyses encyclopedia1010006 and efficient separations [6,7]. -
Identification Criteria for Qualitative Assays Incorporating Column Chromatography and Mass Spectrometry
WADA Technical Document – TD2010IDCR Document Number: TD2010IDCR Version Number: 1.0 Written by: WADA Laboratory Committee Approved by: WADA Executive Committee Approval Date: 08 May, 2010 Effective Date: 01 September, 2010 IDENTIFICATION CRITERIA FOR QUALITATIVE ASSAYS INCORPORATING COLUMN CHROMATOGRAPHY AND MASS SPECTROMETRY The ability of a method to identify a compound is a function of the entire procedure: sample preparation; chromatographic separation; mass analysis; and data assessment. Any description of the method for purposes of documentation should include all parts of the method. The appropriate analytical characteristics shall be documented for a particular assay. The Laboratory shall establish criteria for identification of a compound. 1.0 Sample Preparation The purpose of the sample preparation and chromatographic separation is to present a relatively pure chemical component from the sample to the mass spectrometer. The sample purification step can significantly change both the performance of the chromatographic system and the mass spectrometer. For example, a change in extraction solvent can selectively remove interferences and matrix components that might otherwise co-elute with the compound of interest. In addition, selective preparation procedures such as immunoaffinity extraction or fractions collected from high performance liquid chromatography separation can provide a solution that is nearly devoid of any other compounds. 2.0 Chromatographic Separation 2.1 Gas Chromatography • For capillary gas chromatography, the retention time (RT) of the analyte shall not differ by more than two (2) percent or ±0.1 minutes (whichever is smaller) from that of the same substance in a spiked urine sample, Reference Collection sample, or Reference Material analyzed contemporaneously; • Alternatively, the laboratory may choose to use relative retention time (RRT) as an acceptance criterion, where the retention time of the peak of interest is measured relative to a chromatographic reference compound (CRC). -
QPNC-PAGE Standardized Protocol for Acidic, Basic and Neutral Metalloproteins MW 6 - > 200Kda USE ONLY FRESH GELS
QPNC-PAGE Standardized Protocol For Acidic, Basic and Neutral Metalloproteins MW 6 - > 200kDa USE ONLY FRESH GELS Correspondence: Bernd Kastenholz • Research Centre Juelich • Institute of Chemistry and Dynamics of the Geosphere – Phytosphere (ICG-3) • Juelich 52425 • Germany • E-mail: [email protected] Recommended Tools (Bio-Rad) Model 491 Prep Cell (U.S. patent no. 4,877,510) Power Pac 1000: Constant Power: 5 W; Time: 8 hr Model EP-1 Econo Pump: 1 mL/min; 5 mL/fraction; 80 mL prerun V; 480 ml total V (Eluent) Model 2110 Fraction Collector: 80 Fractions Model EM-1 Econo UV Monitor: AUFS 1.0; Detection Wavelength 254 nm Model 1327 Econo Recorder: Range: 100 mV; Chart Speed: 6 cm/hr Model SV-3 Diverter Ventil Buffer Recirculation Pump: Flow Rate: 95 mL/min (Electrophoresis Buffer) Stock Solutions 1) 200 mM Tris-HCl 10 mM NaN3 pH 10.00 – Keep RT. 2) 200 mM Tris-HCl 10 mM NaN3 pH 8.00 – Keep RT. 3) 40 % Acrylamide/Bis 2.67 % C - Keep 4°C. 4) 10 % Ammonium Persulfate (APS) - Keep 4°C (freshly prepared). Electrophoresis Buffer 20 mM Tris-HCL 1 mM NaN3 pH 10.00 degassed – Keep 4°C Upper Electrophoresis Chamber (Prep Cell): 500 mL Electrophoresis Buffer Lower Electrophoresis Chamber (Prep Cell): 2000 mL Electrophoresis Buffer Eluent 20 mM Tris-HCL 1 mM NaN3 pH 8.00 degassed – Keep 4°C Elution Chamber (Prep Cell): 700 mL Elution Buffer Separating Gel Acrylamide 4% T Volume: 40 mL ingredients: 4 mL 40 % Acrylamide/Bis 2.67 % C 4 mL 200 mM Tris-HCl 10 mM NaN3 pH 10.00 32 mL H2O 200 µL 10% APS 20 µL TEMED Add TEMED and APS at the end. -
Column Chromatography Methods of Analysis In
The Journal of Undergraduate Neuroscience Education (JUNE), Spring 2005, 3(2):A36-A41 ARTICLE Column Chromatography Analysis of Brain Tissue: An Advanced Laboratory Exercise for Neuroscience Majors William H. Church Chemistry Department and Neuroscience Program, Trinity College, Hartford, Connecticut 06106 Neurochemical analysis of discrete brain structures in to useful laboratory techniques such as standard solution experimental animals provides important information on preparation and calibration curve construction, centrifugation, synthesis, release, and metabolism changes following quantitative pipetting, and data evaluation and graphical behavioral or pharmacological experimental manipulations. presentation. Typically, only students that participate in Quantitation of neurotransmitters and their metabolites independent neuroscience research are familiar with these following unilateral drug injections can be carried out using types of quantitative skills. The usefulness of this type of standard chromatographic equipment typically found in most experimental design for understanding behavioral or undergraduate analytical laboratories. This article describes pharmacological effects on neurotransmitter systems is an experiment done in a six session (four hours each) emphasized through a final report requiring a comprehensive component of a neuroscience research methods course. The literature search. experiment provides advanced neuroscience students experience in brain structure dissection, sample preparation, and quantitation of catecholamines -
Protein Blotting Guide
Electrophoresis and Blotting Protein Blotting Guide BEGIN Protein Blotting Guide Theory and Products Part 1 Theory and Products 5 Chapter 5 Detection and Imaging 29 Total Protein Detection 31 Transfer Buffer Formulations 58 5 Chapter 1 Overview of Protein Blotting Anionic Dyes 31 Towbin Buffer 58 Towbin Buffer with SDS 58 Transfer 6 Fluorescent Protein Stains 31 Stain-Free Technology 32 Bjerrum Schafer-Nielsen Buffer 58 Detection 6 Colloidal Gold 32 Bjerrum Schafer-Nielsen Buffer with SDS 58 CAPS Buffer 58 General Considerations and Workflow 6 Immunodetection 32 Dunn Carbonate Buffer 58 Immunodetection Workflow 33 0.7% Acetic Acid 58 Chapter 2 Methods and Instrumentation 9 Blocking 33 Protein Blotting Methods 10 Antibody Incubations 33 Detection Buffer Formulations 58 Electrophoretic Transfer 10 Washes 33 General Detection Buffers 58 Tank Blotting 10 Antibody Selection and Dilution 34 Total Protein Staining Buffers and Solutions 59 Semi-Dry Blotting 11 Primary Antibodies 34 Substrate Buffers and Solutions 60 Microfiltration (Dot Blotting) Species-Specific Secondary Antibodies 34 Stripping Buffer 60 Antibody-Specific Ligands 34 Blotting Systems and Power Supplies 12 Detection Methods 35 Tank Blotting Cells 12 Colorimetric Detection 36 Part 3 Troubleshooting 63 Mini Trans-Blot® Cell and Criterion™ Blotter 12 Premixed and Individual Colorimetric Substrates 38 Transfer 64 Trans-Blot® Cell 12 Immun-Blot® Assay Kits 38 Electrophoretic Transfer 64 Trans-Blot® Plus Cell 13 Immun-Blot Amplified AP Kit 38 Microfiltration 65 Semi-Dry Blotting Cells -
Post-Polymerization Modifications of Polymeric Monolithic Columns: a Review
Chromatography 2014, 1, 24-53; doi:10.3390/chromatography1010024 OPEN ACCESS chromatography ISSN 2227-9075 www.mdpi.com/journal/chromatography Review Post-Polymerization Modifications of Polymeric Monolithic Columns: A Review Sinéad Currivan and Pavel Jandera * Department of Analytical Chemistry, Faculty of Chemical Technology, University of Pardubice, Studentská 573, Pardubice 532 10, Czech Republic; E-Mail: [email protected] * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +420-460-037-023. Received: 18 December 2013; in revised form: 16 January 2014 / Accepted: 17 January 2014 / Published: 10 February 2014 Abstract: The vast cache of methods used in polymeric monolithic column modification is presented herein, with specific attention to post-polymerization modification reactions. The modification of polymeric monolithic columns is defined and can include the modification of pre-existing surface groups, the addition of polymeric chains or indeed the addition of structures such as nano-particles and nano-structures. The use of these modifications can result in the specific patterning of monoliths, useful in microfluidic device design or in the investigation of modification optimization. Keywords: polymer monoliths; modifications; HPLC; CEC; grafting; click chemistry; hypercross-linking; nano-particles List of Abbreviations: 2-acrylamido-2-methyl-1-propanesulphonic acid AMPS, α, α’-azoisobutyronitrile AIBN, adenosine triphosphate ATP, atom transfer radical polymerization ATRP, benzoyl peroxide -
Capillary Electrochromatography for Analysis of Proteins and Metalloproteinases
San Jose State University SJSU ScholarWorks Master's Theses Master's Theses and Graduate Research 2008 Capillary electrochromatography for analysis of proteins and metalloproteinases Vasudha Salgotra San Jose State University Follow this and additional works at: https://scholarworks.sjsu.edu/etd_theses Recommended Citation Salgotra, Vasudha, "Capillary electrochromatography for analysis of proteins and metalloproteinases" (2008). Master's Theses. 3572. DOI: https://doi.org/10.31979/etd.m48v-cr76 https://scholarworks.sjsu.edu/etd_theses/3572 This Thesis is brought to you for free and open access by the Master's Theses and Graduate Research at SJSU ScholarWorks. It has been accepted for inclusion in Master's Theses by an authorized administrator of SJSU ScholarWorks. For more information, please contact [email protected]. CAPILLARY ELECTROCHROMATOGRAPHY FOR ANALYSIS OF PROTEINS AND METALLOPROTEINASES A Thesis Presented to The Faculty of the Department of Chemistry San Jose State University In Partial fulfillment of the Requirements for the Degree Master of Science by Vasudha Salgotra August 2008 UMI Number: 1459696 INFORMATION TO USERS The quality of this reproduction is dependent upon the quality of the copy submitted. Broken or indistinct print, colored or poor quality illustrations and photographs, print bleed-through, substandard margins, and improper alignment can adversely affect reproduction. In the unlikely event that the author did not send a complete manuscript and there are missing pages, these will be noted. Also, if unauthorized copyright material had to be removed, a note will indicate the deletion. ® UMI UMI Microform 1459696 Copyright 2008 by ProQuest LLC. All rights reserved. This microform edition is protected against unauthorized copying under Title 17, United States Code. -
Recent Trends in the Application of Chromatographic Techniques in the Analysis of Luteolin and Its Derivatives
biomolecules Review Recent Trends in the Application of Chromatographic Techniques in the Analysis of Luteolin and Its Derivatives Aleksandra Maria Juszczak 1 , Marijana Zovko-Konˇci´c 2 and Michał Tomczyk 1,* 1 Department of Pharmacognosy, Faculty of Pharmacy, Medical University of Białystok, ul. Mickiewicza 2a, 15-230 Białystok, Poland; [email protected] 2 Department of Pharmacognosy, University of Zagreb, Faculty of Pharmacy and Biochemistry, A. Kovaˇci´ca1, 10000 Zagreb, Croatia; [email protected] * Correspondence: [email protected]; Tel.: +48-85-748-5694 Received: 1 October 2019; Accepted: 8 November 2019; Published: 12 November 2019 Abstract: Luteolin is a flavonoid often found in various medicinal plants that exhibits multiple biological effects such as antioxidant, anti-inflammatory and immunomodulatory activity. Commercially available medicinal plants and their preparations containing luteolin are often used in the treatment of hypertension, inflammatory diseases, and even cancer. However, to establish the quality of such preparations, appropriate analytical methods should be used. Therefore, the present paper provides the first comprehensive review of the current analytical methods that were developed and validated for the quantitative determination of luteolin and its C- and O-derivatives including orientin, isoorientin, luteolin 7-O-glucoside and others. It provides a systematic overview of chromatographic analytical techniques including thin layer chromatography (TLC), high performance thin layer chromatography (HPTLC), liquid chromatography (LC), high performance liquid chromatography (HPLC), gas chromatography (GC) and counter-current chromatography (CCC), as well as the conditions used in the determination of luteolin and its derivatives in plant material. Keywords: luteolin; hyphenated techniques; chromatography 1. Introduction Luteolin (Figure1) is a yellow dye commonly found in fresh plants.