Hindawi Publishing Corporation BioMed Research International Volume 2014, Article ID 926342, 15 pages http://dx.doi.org/10.1155/2014/926342 Research Article Phylogenetic Information Content of Copepoda Ribosomal DNA Repeat Units: ITS1 and ITS2 Impact Maxim V. Zagoskin,1 Valentina I. Lazareva,2 Andrey K. Grishanin,2,3 and Dmitry V. Mukha1 1 Vavilov Institute of General Genetics, Russian Academy of Sciences, Gubkin Street. 3, Moscow 119991, Russia 2 Papanin Institute for Biology of Inland Waters, Russian Academy of Sciences, Borok 152742, Russia 3 Dubna International University for Nature, Society and Man, Universitetskaya Street 19, Dubna 141980, Russia Correspondence should be addressed to Maxim V. Zagoskin;
[email protected], Andrey K. Grishanin;
[email protected] and Dmitry V. Mukha;
[email protected] Received 23 April 2014; Revised 8 July 2014; Accepted 8 July 2014; Published 18 August 2014 Academic Editor: Peter F. Stadler Copyright © 2014 Maxim V. Zagoskin et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The utility of various regions of the ribosomal repeat unit for phylogenetic analysis was examined in 16 species representing four families, nine genera, and two orders of the subclass Copepoda (Crustacea). Fragments approximately 2000 bp in length containing the ribosomal DNA (rDNA) 18S and 28S gene fragments, the 5.8S gene, and the internal transcribed spacer regions I and II (ITS1 and ITS2) were amplified and analyzed. The DAMBE (Data Analysis in Molecular Biology and Evolution) software was usedto analyze the saturation of nucleotide substitutions; this test revealed the suitability of both the 28S gene fragment and the ITS1/ITS2 rDNA regions for the reconstruction of phylogenetic trees.