Chromosomal Abnormalities and Mental Illness
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Identification and Characterization of a Novel 43-Bp Deletion Mutation of The
Liu et al. BMC Medical Genetics (2018) 19:61 https://doi.org/10.1186/s12881-018-0567-z CASE REPORT Open Access Identification and characterization of a novel 43-bp deletion mutation of the ATP7B gene in a Chinese patient with Wilson’s disease: a case report Gang Liu†, Dingyuan Ma†, Jian Cheng, Jingjing Zhang, Chunyu Luo, Yun Sun, Ping Hu, Yuguo Wang, Tao Jiang* and Zhengfeng Xu* Abstract Background: Wilson’s disease (WD) is an autosomal recessive disorder characterized by copper accumulation. ATP7B gene mutations lead to ATP7B protein dysfunction, which in turn causes Wilson’s disease. Case presentation: We describe a male case of Wilson’s disease diagnosed at 10 years after routine biochemical test that showed low serum ceruloplasmin levels and Kayser–Fleischer rings in both corneas. Analysis of the ATP7B gene revealed compound heterozygous mutations in the proband, including the reported c.3517G > A mutation and a novel c.532_574del mutation. The c.532_574del mutation covered a 43-bp region in exon 2, and resulted in a frameshift mutation (p.Leu178PhefsX10). By base sequence analysis, two microhomologies (TCTCA) were observed on both deletion breakpoints in the ATP7B gene. Meanwhile, the presence of some sequence motifs associated with DNA breakage near the deletion region promoted DNA strand break. Conclusions: By comparison, a replication-based mechanism named fork stalling and template switching/ microhomology-mediated break-induced replication (FoSTeS/MMBIR) was used to explain the formation of this novel deletion mutation. Keywords: Wilson’s disease, ATP7B, Novel mutation, FoSTeS/MMBIR Background ATP7B protein dysfunction, which in turn causes accumu- Wilson’s disease (WD, OMIM #277900), an autosomal lation of copper in the liver, brain, kidneys and corneas, recessive disorder characterized by abnormal copper ac- with a wide range of clinical symptoms, including hepatic cumulation and related toxicities, is caused by mutations disorders, neuronal degeneration of the brain, and Kayser- in the ATP7B gene (OMIM *606882) [1]. -
Diagnostic Investigations in Individuals with Mental Retardation: a Systematic Literature Review of Their Usefulness
European Journal of Human Genetics (2005) 13, 6–25 & 2005 Nature Publishing Group All rights reserved 1018-4813/05 $30.00 www.nature.com/ejhg REVIEW Diagnostic investigations in individuals with mental retardation: a systematic literature review of their usefulness Clara DM van Karnebeek1,2, Maaike CE Jansweijer2, Arnold GE Leenders1, Martin Offringa1 and Raoul CM Hennekam*,1,2 1Department of Paediatrics/Emma Children’s Hospital, Academic Medical Center, Amsterdam, The Netherlands; 2Department of Clinical Genetics, Academic Medical Center, Amsterdam, The Netherlands There are no guidelines available for diagnostic studies in patients with mental retardation (MR) established in an evidence-based manner. Here we report such study, based on information from original studies on the results with respect to detected significant anomalies (yield) of six major diagnostic investigations, and evaluate whether the yield differs depending on setting, MR severity, and gender. Results for cytogenetic studies showed the mean yield of chromosome aberrations in classical cytogenetics to be 9.5% (variation: 5.4% in school populations to 13.3% in institute populations; 4.1% in borderline- mild MR to 13.3% in moderate-profound MR; more frequent structural anomalies in females). The median yield of subtelomeric studies was 4.4% (also showing female predominance). For fragile X screening, yields were 5.4% (cytogenetic studies) and 2.0% (molecular studies) (higher yield in moderate-profound MR; checklist use useful). In metabolic investigations, the mean yield of all studies was 1.0% (results depending on neonatal screening programmes; in individual populations higher yield for specific metabolic disorders). Studies on neurological examination all showed a high yield (mean 42.9%; irrespective of setting, degree of MR, and gender). -
Illegitimate DNA Integration in Mammalian Cells
Gene Therapy (2003) 10, 1791–1799 & 2003 Nature Publishing Group All rights reserved 0969-7128/03 $25.00 www.nature.com/gt REVIEW Illegitimate DNA integration in mammalian cells HWu¨ rtele1, KCE Little2 and P Chartrand2,3 1Programme de Biologie Mole´culaire, Universite´ de Montre´al, Montre´al, Canada; 2Department of Medicine, Division of Experimental Medicine, McGill University, Montre´al, Que´bec, Canada; and 3Centre Hospitalier de l’Universite´ de Montre´al and De´partement de Pathologie et de Biologie Cellulaire, Universite´ de Montre´al, Montre´al, Que´bec, Canada Foreign DNA integration is one of the most widely exploited therapy procedures can result in illegitimate integration of cellular processes in molecular biology. Its technical use introduced sequences and thus pose a risk of unforeseeable permits us to alter a cellular genome by incorporating a genomic alterations. The choice of insertion site, the degree fragment of foreign DNA into the chromosomal DNA. This to which the foreign DNA and endogenous locus are modified process employs the cell’s own endogenous DNA modifica- before or during integration, and the resulting impact on tion and repair machinery. Two main classes of integration structure, expression, and stability of the genome are all mechanisms exist: those that draw on sequence similarity factors of illegitimate DNA integration that must be con- between the foreign and genomic sequences to carry out sidered, in particular when designing genetic therapies. homology-directed modifications, and the nonhomologous or Gene Therapy (2003) 10, 1791–1799. doi:10.1038/ ‘illegitimate’ insertion of foreign DNA into the genome. Gene sj.gt.3302074 Keywords: illegitimate DNA integration; DNA repair; transgenesis; recombination; mutagenesis Introduction timate integration. -
Nf1 Gene Deletion
NF1 GENE DELETION NF1 GENE DELETION This resource is for families who have a deletion of the NF1 gene causing neurofi bromatosis type 1 (NF1). This is also referred to as NF1 microdeletion. WHAT ARE CHROMOSOMES, DELETION GENES AND MUTATIONS? Chromosomes are the packages of our genetic information. Within each cell of the body are 46 chromosomes arranged in 23 pairs. One chromosome in each pair is inherited from the Source: U.S. National Library of Medicine mother and the other from the father. The pairs are numbered WHAT IS AN NF1 MICRODELETION? by size. The number 1 chromosome When the entire NF1 gene is missing, it is referred pair is the largest and the number 22 is to as NF1 gene deletion or NF1 microdeletion. the smallest. The last pair of chromosomes Approximately 5% of individuals with a diagnosis (sex chromosomes) help to determine whether of NF1 have a deletion that includes the entire NF1 an individual is a male or a female. Genes are gene. Other than the NF1 gene, there are usually small areas along the chromosomes, and are other nearby genes that are also missing. the body’s blueprints or instructions. We have approximately 20,000 genes that control how we WHAT DOES IT MEAN TO HAVE AN NF1 grow and develop and what we look like. Each MICRODELETION? gene can be thought of as a sentence made up of In addition to the NF1 gene, individuals with NF1 four letters (A, T, C and G). Mutations (also called microdeletion typically have other genes in the pathogenic variants), are changes in a gene’s region of chromosome 17 deleted. -
Status of the P53, P16, RB1, and HER-2 Genes and Chromosomes 3
367 ORIGINAL ARTICLE J Clin Pathol: first published as 10.1136/jcp.2004.021154 on 24 March 2005. Downloaded from Status of the p53, p16, RB1, and HER-2 genes and chromosomes 3, 7, 9, and 17 in advanced bladder cancer: correlation with adjacent mucosa and pathological parameters M Gallucci, F Guadagni, R Marzano, C Leonardo, R Merola, S Sentinelli, E M Ruggeri, R Cantiani, I Sperduti, F de la Iglesia Lopez, A M Cianciulli ............................................................................................................................... J Clin Pathol 2005;58:367–371. doi: 10.1136/jcp.2004.021154 Aims: To evaluate a panel of well known genetic alterations for frequency of changes in bladder cancer that could be considered genomic instability determinants or adjunctive prognostic predictors. Methods: Fluorescence in situ hybridisation analysis was performed to evaluate chromosomes 3, 7, 9, and 17 and the 9p21 (p16), 17p13.1 (p53), 13q14 (RB1), and 17q11.2 (HER-2) chromosomal loci in 48 See end of article for muscle invasive bladder cancer specimens and the adjacent normal mucosa. authors’ affiliations Results: There were significant differences between the frequency of chromosome 7 monosomy/polysomy ....................... and 17 monosomy in the two groups (tumours and adjacent mucosa) (p = 0.004, p = 0.037, and Correspondence to: p = 0.015, respectively). There were no differences in the frequency of gene deletions between tumours Dr A M Cianciulli, Clinical and the adjacent mucosa. 17q11.2 amplification was found in 14.5% of tumours examined, but not in the Pathology, Regina Elena non-malignant epithelium. Chromosome 3, 7, and 17 monosomy and the RB1 heterozygous deletion were Cancer Institute, IFO, Via Elio Chianesi, 53, 00144 significantly associated with stage T3–4 (p = 0.03, p = 0.04, p = 0.04, and p = 0.03, respectively). -
Chromosome 18
Chromosome 18 Description Humans normally have 46 chromosomes in each cell, divided into 23 pairs. Two copies of chromosome 18, one copy inherited from each parent, form one of the pairs. Chromosome 18 spans about 78 million DNA building blocks (base pairs) and represents approximately 2.5 percent of the total DNA in cells. Identifying genes on each chromosome is an active area of genetic research. Because researchers use different approaches to predict the number of genes on each chromosome, the estimated number of genes varies. Chromosome 18 likely contains 200 to 300 genes that provide instructions for making proteins. These proteins perform a variety of different roles in the body. Health Conditions Related to Chromosomal Changes The following chromosomal conditions are associated with changes in the structure or number of copies of chromosome 18. Distal 18q deletion syndrome Distal 18q deletion syndrome occurs when a piece of the long (q) arm of chromosome 18 is missing. The term "distal" means that the missing piece (deletion) occurs near one end of the chromosome arm. The signs and symptoms of distal 18q deletion syndrome include delayed development and learning disabilities, short stature, weak muscle tone ( hypotonia), foot abnormalities, and a wide variety of other features. The deletion that causes distal 18q deletion syndrome can occur anywhere between a region called 18q21 and the end of the chromosome. The size of the deletion varies among affected individuals. The signs and symptoms of distal 18q deletion syndrome are thought to be related to the loss of multiple genes from this part of the long arm of chromosome 18. -
Koolen-De Vries Syndrome: Clinical Report of an Adult and Literature Review
Case Report Cytogenet Genome Res 2016;150:40–45 Accepted: July 25, 2016 DOI: 10.1159/000452724 by M. Schmid Published online: November 17, 2016 Koolen-de Vries Syndrome: Clinical Report of an Adult and Literature Review Claudia Ciaccio Chiara Dordoni Marco Ritelli Marina Colombi Division of Biology and Genetics, Department of Molecular and Translational Medicine, School of Medicine, University of Brescia, Brescia , Italy Key Words Koolen-de Vries syndrome (KdS, also known as 17q21.31 · Deletion · Joint hypermobility · KANSL1 17q21.31 microdeletion syndrome, OMIM #610443) is a rare genetic disorder (prevalence 1/16,000) characterized by typical facial dysmorphisms, cardiac and renal defects, Abstract developmental delay, and intellectual disability of vari- Koolen-de Vries syndrome (KdS) is a rare genetic condition able level [Tan et al., 2009]. The disorder was initially de- characterized by typical facial dysmorphisms, cardiac and re- scribed as a form of mental retardation caused by a 440– nal defects, skeletal anomalies, developmental delay, and in- 680-kb deletion in the 17q21.31 region, typically encom- tellectual disability of variable level. It is caused by a 440– passing 5 genes: CRHR1 (OMIM 122561), MAPT 680-kb deletion in the 17q21.31 region, encompassing (OMIM 157140), IMP5 (OMIM 608284), STH (OMIM CRHR1 , MAPT , IMP5 , STH , and KANSL1 , or by an intragenic 607067), and KANSL1 (OMIM 612452)* [Koolen et al., KANSL1 mutation. The majority of the patients reported are 2006]. Recently,* it has been shown* that haploinsufficien- pediatric or young adults, and long-term studies able to de- cy* of KANSL1 by itself, due to single* nucleotide variants fine the prognosis of the disease are lacking. -
Robertsonian Translocations FTNW
Robertsonian Translocations rarechromo.org Robertsonian translocations A Robertsonian translocation is an unusual type of chromosome rearrangement caused by two particular chromosomes joining together. Out of every 1,000 newborn babies, one has a Robertsonian translocation. The phrase Robertsonian translocation is too long for normal conversation and many people shorten it to rob . When the translocation is balanced , the person with it is called a Robertsonian translocation carrier . As carriers are healthy and have a normal lifespan, many never discover about their unusual chromosome rearrangement. In fact, the translocation can be passed down in families for many generations without anyone discovering. An unbalanced Robertsonian translocation may come to light after a baby is born with a chromosome disorder. Most babies with unbalanced Robertsonian translocations have parents with normal chromosomes. A minority of babies have one parent who is a Robertsonian translocation carrier. What are chromosomes? Chromosomes are the microscopically small structures in the nucleus of the body’s cells that carry genes. These genes are the instructions that tell our bodies how to develop and work properly. We have 46 chromosomes in all, 23 inherited from our father and 23 from our mother. Each chromosome has a short arm and a long arm. Five of the 23 chromosomes have a very small short arm that contains no unique genes; these are chromosome 13, 14, 15, 21 and 22. Technically, they are called acrocentric chromosomes. In a Robertsonian translocation, two of the five acrocentric chromosomes have . broken at the beginning of the short arm near the point where it meets the long arm. -
Sema4 Noninvasive Prenatal Select
Sema4 Noninvasive Prenatal Select Noninvasive prenatal testing with targeted genome counting 2 Autosomal trisomies 5 Trisomy 21 (Down syndrome) 6 Trisomy 18 (Edwards syndrome) 7 Trisomy 13 (Patau syndrome) 8 Trisomy 16 9 Trisomy 22 9 Trisomy 15 10 Sex chromosome aneuploidies 12 Monosomy X (Turner syndrome) 13 XXX (Trisomy X) 14 XXY (Klinefelter syndrome) 14 XYY 15 Microdeletions 17 22q11.2 deletion 18 1p36 deletion 20 4p16 deletion (Wolf-Hirschhorn syndrome) 20 5p15 deletion (Cri-du-chat syndrome) 22 15q11.2-q13 deletion (Angelman syndrome) 22 15q11.2-q13 deletion (Prader-Willi syndrome) 24 11q23 deletion (Jacobsen Syndrome) 25 8q24 deletion (Langer-Giedion syndrome) 26 Turnaround time 27 Specimen and shipping requirements 27 2 Noninvasive prenatal testing with targeted genome counting Sema4’s Noninvasive Prenatal Testing (NIPT)- Targeted Genome Counting analyzes genetic information of cell-free DNA (cfDNA) through a simple maternal blood draw to determine the risk for common aneuploidies, sex chromosomal abnormalities, and microdeletions, in addition to fetal gender, as early as nine weeks gestation. The test uses paired-end next-generation sequencing technology to provide higher depth across targeted regions. It also uses a laboratory-specific statistical model to help reduce false positive and false negative rates. The test can be offered to all women with singleton, twins and triplet pregnancies, including egg donor. The conditions offered are shown in below tables. For multiple gestation pregnancies, screening of three conditions -
Aneuploidy of Chromosome 8 and C-MYC Amplification in Individuals from Northern Brazil with Gastric Adenocarcinoma
ANTICANCER RESEARCH 25: 4069-4074 (2005) Aneuploidy of Chromosome 8 and C-MYC Amplification in Individuals from Northern Brazil with Gastric Adenocarcinoma DANIELLE QUEIROZ CALCAGNO1, MARIANA FERREIRA LEAL1,2, SYLVIA SATOMI TAKENO2, PAULO PIMENTEL ASSUMPÇÃO4, SAMIA DEMACHKI3, MARÍLIA DE ARRUDA CARDOSO SMITH2 and ROMMEL RODRÍGUEZ BURBANO1,2 1Human Cytogenetics and Toxicological Genetics Laboratory, Department of Biology, Center of Biological Sciences, Federal University of Pará, Belém, PA; 2Discipline of Genetics, Department of Morphology, Federal University of São Paulo, São Paulo, SP; 3Department of Pathology and 4Surgery Service, João de Barros Barreto University Hospital, Federal University of Pará, Belém, PA, Brazil Abstract. Background: Gastric cancer is the third most second most important cause of death in the world (2). In frequent type of neoplasia. In northern Brazil, the State of Pará northern Brazil, the State of Pará presents a high incidence has a high incidence of this type of neoplasia. Limited data are of this type of neoplasia, and its capital, Belém, was ranked available so far on the genetic events involved in this disease. eleventh in number of gastric cancers per inhabitant among Materials and Methods: Dual-color fluorescence in situ all cities in the world with cancer records (2). Food factors hybridization (FISH) for the C-MYC gene and chromosome 8 may be related to the high incidence of this neoplasia in centromere was performed in 11 gastric adenocarcinomas. Pará, especially the high consumption of salt-conserved Results: All cases showed aneuploidy of chromosome 8 and food, the limited use of refrigerators and the low C-MYC amplification, in both the diffuse and the intestinal consumption of fresh fruit and vegetables (3). -
Fragile X Syndrome
216 Current Genomics, 2011, 12, 216-224 Fragile X Syndrome Yingratana McLennan1, Jonathan Polussa1, Flora Tassone1,2 and Randi Hagerman*,1,3 1Medical Investigation of Neurodevelopmental Disorders (M.I.N.D.) Institute, University of California Davis Health System, Sacramento, California, USA 2Department of Biochemistry and Molecular Medicine, University of California Davis, School of Medicine, Davis, California, USA 3Department of Pediatrics, University of California Davis Health System, Sacramento, California, USA Abstract: Recent data from a national survey highlighted a significant difference in obesity rates in young fragile X males (31%) compared to age matched controls (18%). Fragile X syndrome (FXS) is the most common cause of intellectual disability in males and the most common single gene cause of autism. This X-linked disorder is caused by an expansion of a trinucleotide CGG repeat (>200) on the promotor region of the fragile X mental retardation 1 gene (FMR1). As a result, the promotor region often becomes methylated which leads to a deficiency or absence of the FMR1 protein (FMRP). Common characteristics of FXS include mild to severe cognitive impairments in males but less severe cognitive impairment in females. Physical features of FXS include an elongated face, prominent ears, and post-pubertal macroorchidism. Severe obesity in full mutation males is often associated with the Prader-Willi phenotype (PWP) which includes hyperphagia, lack of satiation after meals, and hypogonadism or delayed puberty; however, there is no deletion at 15q11-q13 nor uniparental maternal disomy. Herein, we discuss the molecular mechanisms leading to FXS and the Prader-Willi phenotype with an emphasis on mouse FMR1 knockout studies that have shown the reversal of weight increase through mGluR antagonists. -
Ring Chromosome 18 in a Patient with Multiple Anomalies* CATHERINE G
J Med Genet: first published as 10.1136/jmg.4.2.117 on 1 June 1967. Downloaded from 7. med. Genet. (1967). 4, 117. Ring Chromosome 18 in a Patient with Multiple Anomalies* CATHERINE G. PALMER, NUZHAT FAREED, and A. DONALD MERRITT From the Department of Medical Genetics, Indiana University School of Medicine, Indianapolis, Indiana, U.S.A. Ring chromosomes, long of interest in cytogene- At the time of evaluation, the patient (Fig. 1) was 10 tics, have been intensively studied in corn and years old, mentally retarded, and hyperactive. He was Drosophila (McClintock, 1932, 1938; Morgan, 1933; co-operative and able to speak with a three-word syntax. Battacharya, 1950) and also described in Crepis, He had a kyphotic posture and broad-based, balanced gait. The height was 126 cm., weight 212 kg. (both Tulipa, Tradescantia, and other species. In the below the third centile). past few years, a number of reports of ring chromo- His occipital-frontal circumference was 49 cm. (two somes in man have appeared (Table I). We recently standard deviations below the normal). There was encountered a mentally retarded patient with bony roughness over the posterior occipital region. multiple congenital anomalies, in a high proportion The neck had a slight extra fold of skin over the trape- of whose cells we found a ring chromosome 18. zius muscles suggesting webbing, and there was a low The clinical expression of patients with 18 long hairline posteriorly. Ocular findings included an anti- (Lejeune, Berger, Lafourcade, and Rethore, 1966) mongoloid slant, hypertelorism, exotropia, nystagmus, and short arm deletions (Grouchy, Bonnette, and and a normal fundoscopic appearance.