Forestcheck Report of Progress 2013
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Development and Evaluation of Rrna Targeted in Situ Probes and Phylogenetic Relationships of Freshwater Fungi
Development and evaluation of rRNA targeted in situ probes and phylogenetic relationships of freshwater fungi vorgelegt von Diplom-Biologin Christiane Baschien aus Berlin Von der Fakultät III - Prozesswissenschaften der Technischen Universität Berlin zur Erlangung des akademischen Grades Doktorin der Naturwissenschaften - Dr. rer. nat. - genehmigte Dissertation Promotionsausschuss: Vorsitzender: Prof. Dr. sc. techn. Lutz-Günter Fleischer Berichter: Prof. Dr. rer. nat. Ulrich Szewzyk Berichter: Prof. Dr. rer. nat. Felix Bärlocher Berichter: Dr. habil. Werner Manz Tag der wissenschaftlichen Aussprache: 19.05.2003 Berlin 2003 D83 Table of contents INTRODUCTION ..................................................................................................................................... 1 MATERIAL AND METHODS .................................................................................................................. 8 1. Used organisms ............................................................................................................................. 8 2. Media, culture conditions, maintenance of cultures and harvest procedure.................................. 9 2.1. Culture media........................................................................................................................... 9 2.2. Culture conditions .................................................................................................................. 10 2.3. Maintenance of cultures.........................................................................................................10 -
The Contribution of DNA Metabarcoding
The Contribution of DNA Metabarcoding to Fungal Conservation: Diversity Assessment, Habitat Partitioning and Mapping Red-Listed Fungi in Protected Coastal Salix repens Communities in the Netherlands Jo´ zsef Geml1,2*, Barbara Gravendeel1,2,3, Kristiaan J. van der Gaag4, Manon Neilen1, Youri Lammers1, Niels Raes1, Tatiana A. Semenova1,2, Peter de Knijff4, Machiel E. Noordeloos1 1 Naturalis Biodiversity Center, Leiden, The Netherlands, 2 Faculty of Science, Leiden University, Leiden, The Netherlands, 3 University of Applied Sciences Leiden, Leiden, The Netherlands, 4 Forensic Laboratory for DNA Research, Human Genetics, Leiden University Medical Centre, Leiden, The Netherlands Abstract Western European coastal sand dunes are highly important for nature conservation. Communities of the creeping willow (Salix repens) represent one of the most characteristic and diverse vegetation types in the dunes. We report here the results of the first kingdom-wide fungal diversity assessment in S. repens coastal dune vegetation. We carried out massively parallel pyrosequencing of ITS rDNA from soil samples taken at ten sites in an extended area of joined nature reserves located along the North Sea coast of the Netherlands, representing habitats with varying soil pH and moisture levels. Fungal communities in Salix repens beds are highly diverse and we detected 1211 non-singleton fungal 97% sequence similarity OTUs after analyzing 688,434 ITS2 rDNA sequences. Our comparison along a north-south transect indicated strong correlation between soil pH and fungal community composition. The total fungal richness and the number OTUs of most fungal taxonomic groups negatively correlated with higher soil pH, with some exceptions. With regard to ecological groups, dark-septate endophytic fungi were more diverse in acidic soils, ectomycorrhizal fungi were represented by more OTUs in calcareous sites, while detected arbuscular mycorrhizal genera fungi showed opposing trends regarding pH. -
Revista Mexicana De Ingeniería Química
Vol. 19, No. 3 (2020) 1277-1290 Revista Mexicana de Ingeniería Química Hypomyces chrysospermus ACL-01 isolatedCONTENIDO from Boletus edulis and its effect against fungal Volumen 8, número 3, 2009cereal / Volume pathogens 8, number 3, 2009 Hypomyces chrysospermus ACL-01 aislado a partir de Boletus edulis y su efecto sobre hongos patógenos de cereales 213 Derivation and application of the Stefan-Maxwell equations A. Cartagena-Luna1, A.R. Gayosso-Mexia1, M.A. Anducho-Reyes1, E.O. López-Villegas2, Y. Mercado-Flores1* 1Laboratorio de Agrobiotecnología. (Desarrollo y Universidad aplicación de Politécnica las ecuaciones de Pachuca.de Stefan-Maxwell) Carretera Pachuca-Cd. Sahagún Km 20 Ex-Hacienda Stephen Whitakerde Santa Bárbara, 43830, Zempoala Hidalgo, México. 2 Central de Microscopía. Escuela Nacional de Ciencias Biológicas. Instituto Politécnico Nacional. Prolongación de Carpio y Plan de Ayala S/N, Santo Tomás, 11340, Miguel Hidalgo, CDMX, México. Biotecnología / Biotechnology Received: August 16, 2019; Accepted: January 17, 2020 245 Modelado de la biodegradación en biorreactores de lodos de hidrocarburos totales del petróleo Abstract intemperizados en suelos y sedimentos In this study, the Hypomyces chrysospermus ACL-01 fungus was isolated from the fruiting body of edible basidiomycete Boletus edulis, collected in Acaxochitlán (Biodegradation in the modeling State of of Hidalgo, sludge bioreactors Mexico popularly of total petroleum known as hydrocarbons tlacoayel. Theweathering antagonistic in soil effect of the isolated fungus againstand di sediments)fferent fungal cereal pathogens was evaluated. The dual confrontation test and scanning electron microscopy analysis revealed that this ascomycete grows on the basidiomycetes Sporisorium reilianum and Tilletia sp., causing loss of cell viability. However,S.A. -
New Data on the Occurence of an Element Both
Analele UniversităĠii din Oradea, Fascicula Biologie Tom. XVI / 2, 2009, pp. 53-59 CONTRIBUTIONS TO THE KNOWLEDGE DIVERSITY OF LIGNICOLOUS MACROMYCETES (BASIDIOMYCETES) FROM CĂ3ĂğÂNII MOUNTAINS Ioana CIORTAN* *,,Alexandru. Buia” Botanical Garden, Craiova, Romania Corresponding author: Ioana Ciortan, ,,Alexandru Buia” Botanical Garden, 26 Constantin Lecca Str., zip code: 200217,Craiova, Romania, tel.: 0040251413820, e-mail: [email protected] Abstract. This paper presents partial results of research conducted between 2005 and 2009 in different forests (beech forests, mixed forests of beech with spruce, pure spruce) in CăSăĠânii Mountains (Romania). 123 species of wood inhabiting Basidiomycetes are reported from the CăSăĠânii Mountains, both saprotrophs and parasites, as identified by various species of trees. Keywords: diversity, macromycetes, Basidiomycetes, ecology, substrate, saprotroph, parasite, lignicolous INTRODUCTION MATERIALS AND METHODS The data presented are part of an extensive study, The research was conducted using transects and which will complete the PhD thesis. The CăSăĠânii setting fixed locations in some vegetable formations, Mountains are a mountain group of the ùureanu- which were visited several times a year beginning with Parâng-Lotru Mountains, belonging to the mountain the months April-May until October-November. chain of the Southern Carpathians. They are situated in Fungi were identified on the basis of both the SE parth of the Parâng Mountain, between OlteĠ morphological and anatomical properties of fruiting River in the west, Olt River in the east, Lotru and bodies and according to specific chemical reactions LaroriĠa Rivers in the north. Our area is 900 Km2 large using the bibliography [1-8, 10-13]. Special (Fig. 1). The vegetation presents typical levers: major presentation was made in phylogenetic order, the associations characteristic of each lever are present in system of classification used was that adopted by Kirk this massif. -
Analysis of the Intcrgencric Relationships of the Australian Frog Family Myobatrachidae
Analysis of the Intcrgencric Relationships of the Australian Frog Family Myobatrachidae W. RONALD HEYER and DAVID S. LIEM SMITHSONIAN CONTRIBUTIONS TO ZOOLOGY • NUMBER 233 SERIAL PUBLICATIONS OF THE SMITHSONIAN INSTITUTION The emphasis upon publications as a means of diffusing knowledge was expressed by the first Secretary of the Smithsonian Institution. In his formal plan for the Insti- tution, Joseph Henry articulated a program that included the following statement: "It is proposed to publish a series of reports, giving an account of the new discoveries in science, and of the changes made from year to year in all branches of knowledge." This keynote of basic research has been adhered to over the years in the issuance of thousands of titles in serial publications under the Smithsonian imprint, com- mencing with Smithsonian Contributions to Knowledge in 1848 and continuing with the following active series: Smithsonian Annals of Flight Smithsonian Contributions to Anthropology Smithsonian Contributions to Astrophysics Smithsonian Contributions to Botany Smithsonian Contributions to the Earth Sciences Smithsonian Contributions to Paleobiology Smithsonian Contributions to Zoology Smithsonian Studies in History and Technology In these series, the Institution publishes original articles and monographs dealing with the research and collections of its several museums and offices and of professional colleagues at other institutions of learning. These papers report newly acquired facts, synoptic interpretations of data, or original theory in specialized fields. These pub- lications are distributed by mailing lists to libraries, laboratories, and other interested institutions and specialists throughout the world. Individual copies may be obtained from the Smithsonian Institution Press as long as stocks are available. -
Habitat Types
Habitat Types The following section features ten predominant habitat types on the West Coast of the Eyre Peninsula, South Australia. It provides a description of each habitat type and the native plant and fauna species that commonly occur there. The fauna species lists in this section are not limited to the species included in this publication and include other coastal fauna species. Fauna species included in this publication are printed in bold. Information is also provided on specific threats and reference sites for each habitat type. The habitat types presented are generally either characteristic of high-energy exposed coastline or low-energy sheltered coastline. Open sandy beaches, non-vegetated dunefields, coastal cliffs and cliff tops are all typically found along high energy, exposed coastline, while mangroves, sand flats and saltmarsh/samphire are characteristic of low energy, sheltered coastline. Habitat Types Coastal Dune Shrublands NATURAL DISTRIBUTION shrublands of larger vegetation occur on more stable dunes and Found throughout the coastal environment, from low beachfront cliff-top dunes with deep stable sand. Most large dune shrublands locations to elevated clifftops, wherever sand can accumulate. will be composed of a mosaic of transitional vegetation patches ranging from bare sand to dense shrub cover. DESCRIPTION This habitat type is associated with sandy coastal dunes occurring The understory generally consists of moderate to high diversity of along exposed and sometimes more sheltered coastline. Dunes are low shrubs, sedges and groundcovers. Understory diversity is often created by the deposition of dry sand particles from the beach by driven by the position and aspect of the dune slope. -
Literature Cited in Lizards Natural History Database
Literature Cited in Lizards Natural History database Abdala, C. S., A. S. Quinteros, and R. E. Espinoza. 2008. Two new species of Liolaemus (Iguania: Liolaemidae) from the puna of northwestern Argentina. Herpetologica 64:458-471. Abdala, C. S., D. Baldo, R. A. Juárez, and R. E. Espinoza. 2016. The first parthenogenetic pleurodont Iguanian: a new all-female Liolaemus (Squamata: Liolaemidae) from western Argentina. Copeia 104:487-497. Abdala, C. S., J. C. Acosta, M. R. Cabrera, H. J. Villaviciencio, and J. Marinero. 2009. A new Andean Liolaemus of the L. montanus series (Squamata: Iguania: Liolaemidae) from western Argentina. South American Journal of Herpetology 4:91-102. Abdala, C. S., J. L. Acosta, J. C. Acosta, B. B. Alvarez, F. Arias, L. J. Avila, . S. M. Zalba. 2012. Categorización del estado de conservación de las lagartijas y anfisbenas de la República Argentina. Cuadernos de Herpetologia 26 (Suppl. 1):215-248. Abell, A. J. 1999. Male-female spacing patterns in the lizard, Sceloporus virgatus. Amphibia-Reptilia 20:185-194. Abts, M. L. 1987. Environment and variation in life history traits of the Chuckwalla, Sauromalus obesus. Ecological Monographs 57:215-232. Achaval, F., and A. Olmos. 2003. Anfibios y reptiles del Uruguay. Montevideo, Uruguay: Facultad de Ciencias. Achaval, F., and A. Olmos. 2007. Anfibio y reptiles del Uruguay, 3rd edn. Montevideo, Uruguay: Serie Fauna 1. Ackermann, T. 2006. Schreibers Glatkopfleguan Leiocephalus schreibersii. Munich, Germany: Natur und Tier. Ackley, J. W., P. J. Muelleman, R. E. Carter, R. W. Henderson, and R. Powell. 2009. A rapid assessment of herpetofaunal diversity in variously altered habitats on Dominica. -
Friends of Weir Wood Society Fungus Walk Sunday 16Th September 2018
Friends of Weir Wood Society Fungus Walk Sunday 16th September 2018 The walk was organised with Nick Aplin - the Chairman of The Sussex Fungus Group and a County Fungus Recorder. We are grateful to Nick for all his hard work and to the members of his Group who spread out to help us all keep up with the different finds and explanations. This must have been one of the most expertly led groups ever with both County Fungus Recorders and the County Bryophyte (Mosses and Liverworts) Recorder all taking part. It was fascinating watching the various experts going instinctively to the most likely location to find their items of interest. Sometimes it was a wet patch; sometimes a rotting log; sometimes a clump of grass and sometimes the side of a tree trunk. The long dry summer has not been good for fungi. Perversely the water level in the reservoir has remained high throughout. So the larger and more colourful fungi had not grown. Nevertheless, our guides found a wide range of examples and some unusual species. They added background, histories and folk tales that made even the "little brown jobs" interesting. We found a small piece of wood that had been stained green by Green Elfcup (see photo *1). In the 18th and 19th centuries such wood was prized for making Tunbridge Ware. The craft specialises in marquetry using many small pieces of different woods to form pictures and patterns. Only natural colours were used so the stained samples were in demand. The fungus is Chlorociboria aeruginascens and is also known as Green Wood Cup. -
The Balance Between Egg and Clutch Size Among Australian Amphibians
bioRxiv preprint doi: https://doi.org/10.1101/2020.03.15.992495; this version posted March 17, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Quality versus quantity: The balance between egg and clutch size among Australian amphibians is related to life history and environmental conditions John Gould1*, Chad Beranek1 2, Jose Valdez3 Michael Mahony1 1Conservation Biology Research Group, School of Environmental and Life Sciences, University of Newcastle, Callaghan, NSW 2308, Australia 2 FAUNA Research Alliance, PO Box 5092, Kahibah, NSW 2290, Australia 3 Department of Bioscience - Kalø, Aarhus University, Grenåvej 14, 8410, Rønde, Denmark Correspondence John Gould, Conservation Biology Research Group, School of Environmental and Life Sciences, University of Newcastle, University Drive, Callaghan, NSW 2308, Australia Email: [email protected], mobile: 0468534265 Abstract An inverse relationship between egg and clutch size has been found repeatedly across animal groups, including birds, reptiles and amphibians, and is considered to be a result of resource limitations and physical constraints on the reproducing female. However, few studies have contextualised this relationship with respect to various environmental selecting pressures and life history traits that have also likely influenced the selection of an optimal egg/clutch size bioRxiv preprint doi: https://doi.org/10.1101/2020.03.15.992495; this version posted March 17, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
Re-Thinking the Classification of Corticioid Fungi
mycological research 111 (2007) 1040–1063 journal homepage: www.elsevier.com/locate/mycres Re-thinking the classification of corticioid fungi Karl-Henrik LARSSON Go¨teborg University, Department of Plant and Environmental Sciences, Box 461, SE 405 30 Go¨teborg, Sweden article info abstract Article history: Corticioid fungi are basidiomycetes with effused basidiomata, a smooth, merulioid or Received 30 November 2005 hydnoid hymenophore, and holobasidia. These fungi used to be classified as a single Received in revised form family, Corticiaceae, but molecular phylogenetic analyses have shown that corticioid fungi 29 June 2007 are distributed among all major clades within Agaricomycetes. There is a relative consensus Accepted 7 August 2007 concerning the higher order classification of basidiomycetes down to order. This paper Published online 16 August 2007 presents a phylogenetic classification for corticioid fungi at the family level. Fifty putative Corresponding Editor: families were identified from published phylogenies and preliminary analyses of unpub- Scott LaGreca lished sequence data. A dataset with 178 terminal taxa was compiled and subjected to phy- logenetic analyses using MP and Bayesian inference. From the analyses, 41 strongly Keywords: supported and three unsupported clades were identified. These clades are treated as fam- Agaricomycetes ilies in a Linnean hierarchical classification and each family is briefly described. Three ad- Basidiomycota ditional families not covered by the phylogenetic analyses are also included in the Molecular systematics classification. All accepted corticioid genera are either referred to one of the families or Phylogeny listed as incertae sedis. Taxonomy ª 2007 The British Mycological Society. Published by Elsevier Ltd. All rights reserved. Introduction develop a downward-facing basidioma. -
ARAZPA Amphibian Action Plan
Appendix 1 to Murray, K., Skerratt, L., Marantelli, G., Berger, L., Hunter, D., Mahony, M. and Hines, H. 2011. Guidelines for minimising disease risks associated with captive breeding, raising and restocking programs for Australian frogs. A report for the Australian Government Department of Sustainability, Environment, Water, Population and Communities. ARAZPA Amphibian Action Plan Compiled by: Graeme Gillespie, Director Wildlife Conservation and Science, Zoos Victoria; Russel Traher, Amphibian TAG Convenor, Curator Healesville Sanctuary Chris Banks, Wildlife Conservation and Science, Zoos Victoria. February 2007 1 1. Background Amphibian species across the world have declined at an alarming rate in recent decades. According to the IUCN at least 122 species have gone extinct since 1980 and nearly one third of the world’s near 6,000 amphibian species are classified as threatened with extinction, placing the entire class at the core of the current biodiversity crisis (IUCN, 2006). Australasia too has experienced significant declines; several Australian species are considered extinct and nearly 25% of the remainder are threatened with extinction, while all four species native to New Zealand are threatened. Conventional causes of biodiversity loss, habitat destruction and invasive species, are playing a major role in these declines. However, emergent disease and climate change are strongly implicated in many declines and extinctions. These factors are now acting globally, rapidly and, most disturbingly, in protected and near pristine areas. Whilst habitat conservation and mitigation of threats in situ are essential, for many taxa the requirement for some sort of ex situ intervention is mounting. In response to this crisis there have been a series of meetings organised by the IUCN (World Conservation Union), WAZA (World Association of Zoos & Aquariums) and CBSG (Conservation Breeding Specialist Group, of the IUCN Species Survival Commission) around the world to discuss how the zoo community can and should respond. -
A New Morphological Arrangement of the Polyporales. I
A new morphological arrangement of the Polyporales. I. Phanerochaetineae © Ivan V. Zmitrovich, Vera F. Malysheva,* Wjacheslav A. Spirin** V.L. Komarov Botanical Institute RAS, Prof. Popov str. 2, 197376, St-Petersburg, Russia e-mail: [email protected], *[email protected], **[email protected] Zmitrovich I.V., Malysheva V.F., Spirin W.A. A new morphological arrangement of the Polypo- rales. I. Phanerochaetineae. Mycena. 2006. Vol. 6. P. 4–56. UDC 582.287.23:001.4. SUMMARY: A new taxonomic division of the suborder Phanerochaetineae of the order Polyporales is presented. The suborder covers five families, i.e. Faerberiaceae Pouzar, Fistuli- naceae Lotsy (including Jülich’s Bjerkanderaceae, Grifolaceae, Hapalopilaceae, and Meripi- laceae), Laetiporaceae Jülich (=Phaeolaceae Jülich), and Phanerochaetaceae Jülich. As a basis of the suggested subdivision, features of basidioma micromorphology are regarded, with special attention to hypha/epibasidium ratio. Some generic concepts are changed. New genera Raduliporus Spirin & Zmitr. (type Polyporus aneirinus Sommerf. : Fr.), Emmia Zmitr., Spirin & V. Malysheva (type Polyporus latemarginatus Dur. & Mont.), and Leptochaete Zmitr. & Spirin (type Thelephora sanguinea Fr. : Fr.) are described. The genus Byssomerulius Parmasto is proposed to be conserved versus Dictyonema C. Ag. The genera Abortiporus Murrill and Bjer- kandera P. Karst. are reduced to Grifola Gray. In total, 69 new combinations are proposed. The species Emmia metamorphosa (Fuckel) Spirin, Zmitr. & Malysheva (commonly known as Ceri- poria metamorphosa (Fuckel) Ryvarden & Gilb.) is reported as new to Russia. Key words: aphyllophoroid fungi, corticioid fungi, Dictyonema, Fistulinaceae, homo- basidiomycetes, Laetiporaceae, merulioid fungi, Phanerochaetaceae, phylogeny, systematics I. INTRODUCTORY NOTES There is no general agreement how to outline the limits of the forms which should be called phanerochaetoid fungi.