Trichoplax Adhaerens
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Predicted Glycosyltransferases Promote Development and Prevent Spurious Cell Clumping in the Choanoflagellate S
RESEARCH ADVANCE Predicted glycosyltransferases promote development and prevent spurious cell clumping in the choanoflagellate S. rosetta Laura A Wetzel1,2, Tera C Levin1,2, Ryan E Hulett1,2, Daniel Chan1,2, Grant A King1,2, Reef Aldayafleh1,2, David S Booth1,2, Monika Abedin Sigg1,2, Nicole King1,2* 1Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States; 2Howard Hughes Medical Institute, University of California, Berkeley, Berkeley, United States Abstract In a previous study we established forward genetics in the choanoflagellate Salpingoeca rosetta and found that a C-type lectin gene is required for rosette development (Levin et al., 2014). Here we report on critical improvements to genetic screens in S. rosetta while also investigating the genetic basis for rosette defect mutants in which single cells fail to develop into orderly rosettes and instead aggregate promiscuously into amorphous clumps of cells. Two of the mutants, Jumble and Couscous, mapped to lesions in genes encoding two different predicted glycosyltransferases and displayed aberrant glycosylation patterns in the basal extracellular matrix (ECM). In animals, glycosyltransferases sculpt the polysaccharide-rich ECM, regulate integrin and cadherin activity, and, when disrupted, contribute to tumorigenesis. The finding that predicted glycosyltransferases promote proper rosette development and prevent cell aggregation in S. rosetta suggests a pre-metazoan role for glycosyltransferases in regulating development and preventing abnormal tumor-like multicellularity. *For correspondence: DOI: https://doi.org/10.7554/eLife.41482.001 [email protected] Competing interests: The authors declare that no competing interests exist. Introduction Funding: See page 23 The transition to multicellularity was essential for the evolution of animals from their single celled Received: 05 September 2018 ancestors (Szathma´ry and Smith, 1995). -
The Architecture of Cell Differentiation in Choanoflagellates And
bioRxiv preprint doi: https://doi.org/10.1101/452185; this version posted October 29, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 The architecture of cell differentiation in choanoflagellates 2 and sponge choanocytes 3 Davis Laundon1,2,6, Ben Larson3, Kent McDonald3, Nicole King3,4 and Pawel 4 Burkhardt1,5* 5 1 Marine Biological Association of the United Kingdom, The Laboratory, Citadel Hill, 6 Plymouth, PL1 2PB, United Kingdom 7 2 Plymouth University, Drake Circus, Plymouth, PL4 8AA, United Kingdom 8 3 Department of Molecular and Cell Biology, University of California, Berkeley, USA 9 4 Howard Hughes Medical Institute 10 5 Sars International Centre for Molecular Marine Biology, University of Bergen, 11 Thormohlensgate 55, 5020 Bergen, Norway 12 6 Current Affiliation: University of East Anglia, Norwich, NR4 7TJ, United Kingdom 13 14 *Correspondence [email protected] 15 16 17 18 19 20 21 22 23 24 25 bioRxiv preprint doi: https://doi.org/10.1101/452185; this version posted October 29, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 26 SUMMARY 27 Collar cells are ancient animal cell types which are conserved across the animal 28 kingdom [1] and their closest relatives, the choanoflagellates [2]. -
1 Lessons from Simple Marine Models on the Bacterial Regulation
bioRxiv preprint doi: https://doi.org/10.1101/211797; this version posted October 31, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Lessons from simple marine models on the bacterial regulation of eukaryotic development Arielle Woznicaa and Nicole Kinga,1 a Howard Hughes Medical Institute and Department of Molecular and Cell Biology, University of California, Berkeley, California 94720, United States 1 Corresponding author, [email protected]. 1 bioRxiv preprint doi: https://doi.org/10.1101/211797; this version posted October 31, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Highlights 2 - Cues from environmental bacteria influence the development of many marine 3 eukaryotes 4 5 - The molecular cues produced by environmental bacteria are structurally diverse 6 7 - Eukaryotes can respond to many different environmental bacteria 8 9 - Some environmental bacteria act as “information hubs” for diverse eukaryotes 10 11 - Experimentally tractable systems, like the choanoflagellate S. rosetta, promise to 12 reveal molecular mechanisms underlying these interactions 13 14 Abstract 15 Molecular cues from environmental bacteria influence important developmental 16 decisions in diverse marine eukaryotes. Yet, relatively little is understood about the 17 mechanisms underlying these interactions, in part because marine ecosystems are 18 dynamic and complex. -
A Six-Gene Phylogeny Provides New Insights Into Choanoflagellate Evolution Martin Carr, Daniel J
A six-gene phylogeny provides new insights into choanoflagellate evolution Martin Carr, Daniel J. Richter, Parinaz Fozouni, Timothy J. Smith, Alexandra Jeuck, Barry S.C. Leadbeater, Frank Nitsche To cite this version: Martin Carr, Daniel J. Richter, Parinaz Fozouni, Timothy J. Smith, Alexandra Jeuck, et al.. A six- gene phylogeny provides new insights into choanoflagellate evolution. Molecular Phylogenetics and Evolution, Elsevier, 2017, 107, pp.166 - 178. 10.1016/j.ympev.2016.10.011. hal-01393449 HAL Id: hal-01393449 https://hal.archives-ouvertes.fr/hal-01393449 Submitted on 7 Nov 2016 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License Molecular Phylogenetics and Evolution 107 (2017) 166–178 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A six-gene phylogeny provides new insights into choanoflagellate evolution ⇑ Martin Carr a, ,1, Daniel J. Richter b,1,2, Parinaz Fozouni b,3, Timothy J. Smith a, Alexandra Jeuck c, Barry S.C. Leadbeater d, Frank Nitsche c a School of Applied Sciences, University of Huddersfield, Huddersfield HD1 3DH, UK b Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720-3200, USA c University of Cologne, Biocentre, General Ecology, Zuelpicher Str. -
A Non-Bilaterian Perspective on the Development and Evolution of Animal Digestive Systems
Cell and Tissue Research (2019) 377:321–339 https://doi.org/10.1007/s00441-019-03075-x REVIEW A non-bilaterian perspective on the development and evolution of animal digestive systems Patrick R. H. Steinmetz 1 Received: 22 March 2019 /Accepted: 8 July 2019 /Published online: 7 August 2019 # The Author(s) 2019 Abstract Digestive systems and extracellular digestion are key animal features, but their emergence during early animal evolution is currently poorly understood. As the last common ancestor of non-bilaterian animal groups (sponges, ctenophores, placozoans and cnidarians) dates back to the beginning of animal life, their study and comparison provides important insights into the early evolution of digestive systems and functions. Here, I have compiled an overview of the development and cell biology of digestive tissues in non-bilaterian animals. I will highlight the fundamental differences between extracellular and intracellular digestive processes, and how these are distributed among animals. Cnidarians (e.g. sea anemones, corals, jellyfish), the phylogenetic outgroup of bilaterians (e.g. vertebrates, flies, annelids), occupy a key position to reconstruct the evolution of bilaterian gut evolution. A major focus will therefore lie on the development and cell biology of digestive tissues in cnidarians, especially sea anemones, and how they compare to bilaterian gut tissues. In that context, I will also review how a recent study on the gastrula fate map of the sea anemone Nematostella vectensis challenges our long-standing conceptions on the evolution of cnidarian and bilaterian germ layers and guts. Keywords Cnidaria . Porifera . Placozoa . Ctenophora . Gastrovascular system . Gut evolution . Extracellular digestion . Intracellular digestion . Germ layer evolution Introduction ester bonds. -
The Use of Inflammation by Tumor Cells
223 COMMENTARY The Use of Inflammation by Tumor Cells 1 Jose-Ignacio Arias, M.D., Ph.D. 2 Marı´a-Angeles Aller, M.D., Ph.D. 2 Jaime Arias, M.D., Ph.D. 1 Servicio de Cirugı´a General, Hospital Monte Naranco, Oviedo, Asturias, Spain. 2 Ca´tedra de Cirugı´a, Departamento de Cirugı´a I, Facultad de Medicina, Universidad Complutense de Madrid, Madrid, Spain. ancer is malignant, because tumor cells invade neighboring tis- Csues and survive in these ectopic sites. This invasion permits them to enter into the circulation, from which they can reach distant organs and, eventually, form secondary tumors, called metastases.1 The classical metastatic cascade encompasses intravasation by tumor cells, circulation of these cells in lymph and blood vascular systems, arrest in distant organs, extravasation, and growth into met- astatic foci.1,2 However, the tumor cells can adopt a great variety of phenotypes; and, due to this plasticity of the malignant cells; it has been proposed that a more dynamic view is needed for the metastatic cascade.2,3 Invasion and metastases are not unique for cancer, because they also occur during embryonic development, in adult tissue mainte- nance, and in many noncancerous diseases, such as in repair pro- cesses.1,2 In relation to the latter, tumor cells have been described as wounds that do not heal.4 Both tissue repair, a beneficial process, and tumor formation, a harmful process, share some molecular mechanisms that can be ascribed to inflammation.1,2,5 Therefore, in one sense, it is possible that inflammation is shared by both processes: tissue repair and tumor formation. -
Animal Evolution: Looking for the First Nervous System
Dispatch R655 cellular or symbiotic functions, cannot genome reduction in the symbiont, 10. Nakabachi, A., Ishida, K., Hongoh, Y., Ohkuma, M., and Miyagishima, S. (2014). be lost without harmful or fatal results. HGT from various sources to the host Aphid gene of bacterial origin encodes a But these genes can be replaced, genome to maintain symbiont function, protein transported to an obligate and perhaps ever more easily as and now the targeting of protein endosymbiont. Curr. Biol. 24, R640–R641. 11. Moran, N.A., and Jarvik, T. (2010). Lateral the interaction networks of the products from host to symbiont has transfer of genes from fungi underlies endosymbiont reduce in complexity, even been found [4,10]. These make carotenoid production in aphids. Science 328, 624–627. thus reducing pressures on proteins clean separation of endosymbiont from 12. Jorgenson, M.A., Chen, Y., Yahashiri, A., to co-evolve. In a sense, when genes organelle more difficult to see, Popham, D.L., and Weiss, D.S. (2014). The are transferred from symbiont or prompting us not to look for the point bacterial septal ring protein RlpA is a lytic transglycosylase that contributes to rod organelle to the host nuclear genome when a symbiont ‘becomes’ an shape and daughter cell separation in and their proteins targeted back, this is organelle, but rather to ask, ‘Is there Pseudomonas aeruginosa. Mol. Microbiol. 93, 113–128. a compensatory change [4,9,14,17]. really anything so special about 13. Acuna, R., Padilla, B.E., Florez-Ramos, C.P., But other compensatory transfers that organelles?’ Rubio, J.D., Herrera, J.C., Benavides, P., affect a symbiont or organelle can also Lee, S.J., Yeats, T.H., Egan, A.N., Doyle, J.J., et al. -
A Flagellate-To-Amoeboid Switch in the Closest Living Relatives of Animals
RESEARCH ARTICLE A flagellate-to-amoeboid switch in the closest living relatives of animals Thibaut Brunet1,2*, Marvin Albert3, William Roman4, Maxwell C Coyle1,2, Danielle C Spitzer2, Nicole King1,2* 1Howard Hughes Medical Institute, Chevy Chase, United States; 2Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States; 3Department of Molecular Life Sciences, University of Zu¨ rich, Zurich, Switzerland; 4Department of Experimental and Health Sciences, Pompeu Fabra University (UPF), CIBERNED, Barcelona, Spain Abstract Amoeboid cell types are fundamental to animal biology and broadly distributed across animal diversity, but their evolutionary origin is unclear. The closest living relatives of animals, the choanoflagellates, display a polarized cell architecture (with an apical flagellum encircled by microvilli) that resembles that of epithelial cells and suggests homology, but this architecture differs strikingly from the deformable phenotype of animal amoeboid cells, which instead evoke more distantly related eukaryotes, such as diverse amoebae. Here, we show that choanoflagellates subjected to confinement become amoeboid by retracting their flagella and activating myosin- based motility. This switch allows escape from confinement and is conserved across choanoflagellate diversity. The conservation of the amoeboid cell phenotype across animals and choanoflagellates, together with the conserved role of myosin, is consistent with homology of amoeboid motility in both lineages. We hypothesize that -
The Choanoflagellate S. Rosetta Integrates Cues from Diverse Bacteria to Enhance Multicellular Development
The choanoflagellate S. rosetta integrates cues from diverse bacteria to enhance multicellular development By Ella Victoria Ireland A dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Molecular and Cell Biology in the Graduate Division of the University of California, Berkeley Committee in charge: Professor Nicole King, Chair Professor Russell Vance Professor Iswar Hariharan Professor Brian Staskawicz Fall 2019 Abstract The choanoflagellate S. rosetta integrates cues from diverse bacteria to enhance multicellular development By Ella Victoria Ireland Doctor of Philosophy in Molecular and Cell Biology University of California, Berkeley Professor Nicole King, Chair Bacteria play critical roles in regulating animal development, homeostasis and disease. Animals are often hosts to hundreds of different species of bacteria, which produce thousands of different molecules with the potential to influence animal biology. Direct interactions between different species of bacteria, as well as the environmental context of the animal-bacteria interaction, can have a significant impact on the outcome for the animal (Chapter 1). While we are beginning to understand the role of context in bacteria-animal interactions, surprisingly little is known about how animals integrate multiple distinct bacterial inputs. In my doctoral research I studied the choanoflagellate Salpingoeca rosetta, one of the closest living relatives of animals, to learn more about how eukaryotes integrate diverse bacterial cues. As with animals, bacteria regulate critical aspects of S. rosetta biology. The bacterium Algoriphagus machipongonensis produces sulfonolipid Rosette Inducing Factors (RIFs), which induce multicellular “rosette” development in S. rosetta. In contrast, the bacterium Vibrio fischeri produces a chondroitinase, EroS, which acts as an aphrodisiac and induces S. -
Basal Metazoans - Dirk Erpenbeck, Simion Paul, Michael Manuel, Paulyn Cartwright, Oliver Voigt and Gert Worheide
EVOLUTION OF PHYLOGENETIC TREE OF LIFE - Basal Metazoans - Dirk Erpenbeck, Simion Paul, Michael Manuel, Paulyn Cartwright, Oliver Voigt and Gert Worheide BASAL METAZOANS Dirk Erpenbeck Ludwig-Maximilians Universität München, Germany Simion Paul and Michaël Manuel Université Pierre et Marie Curie in Paris, France. Paulyn Cartwright University of Kansas USA. Oliver Voigt and Gert Wörheide Ludwig-Maximilians Universität München, Germany Keywords: Metazoa, Porifera, sponges, Placozoa, Cnidaria, anthozoans, jellyfishes, Ctenophora, comb jellies Contents 1. Introduction on ―Basal Metazoans‖ 2. Phylogenetic relationships among non-bilaterian Metazoa 3. Porifera (Sponges) 4. Placozoa 5. Ctenophora (Comb-jellies) 6. Cnidaria 7. Cultural impact and relevance to human welfare Glossary Bibliography Biographical Sketch Summary Basal metazoans comprise the four non-bilaterian animal phyla Porifera (sponges), Cnidaria (anthozoans and jellyfishes), Placozoa (Trichoplax) and Ctenophora (comb jellies). The phylogenetic position of these taxa in the animal tree is pivotal for our understanding of the last common metazoan ancestor and the character evolution all Metazoa,UNESCO-EOLSS but is much debated. Morphological, evolutionary, internal and external phylogenetic aspects of the four phyla are highlighted and discussed. SAMPLE CHAPTERS 1. Introduction on “Basal Metazoans” In many textbooks the term ―lower metazoans‖ still refers to an undefined assemblage of invertebrate phyla, whose phylogenetic relationships were rather undefined. This assemblage may contain both bilaterian and non-bilaterian taxa. Currently, ―Basal Metazoa‖ refers to non-bilaterian animals only, four phyla that lack obvious bilateral symmetry, Porifera, Placozoa, Cnidaria and Ctenophora. ©Encyclopedia of Life Support Systems (EOLSS) EVOLUTION OF PHYLOGENETIC TREE OF LIFE - Basal Metazoans - Dirk Erpenbeck, Simion Paul, Michael Manuel, Paulyn Cartwright, Oliver Voigt and Gert Worheide These four phyla have classically been known as ―diploblastic‖ Metazoa. -
Prey Capture and Digestion in the Carnivorous Sponge Asbestopluma Hypogea (Porifera: Demospongiae)
Zoomorphology (2004) 123:179–190 DOI 10.1007/s00435-004-0100-0 ORIGINAL ARTICLE Jean Vacelet · Eric Duport Prey capture and digestion in the carnivorous sponge Asbestopluma hypogea (Porifera: Demospongiae) Received: 2 May 2003 / Accepted: 17 March 2004 / Published online: 27 April 2004 Springer-Verlag 2004 Abstract Asbestopluma hypogea (Porifera) is a carnivo- Electronic Supplementary Material Supplementary ma- rous species that belongs to the deep-sea taxon Cla- terial is available in the online version of this article at dorhizidae but lives in littoral caves and can be raised http://dx.doi.org/10.1007/s00435-004-0100-0 easily in an aquarium. It passively captures its prey by means of filaments covered with hook-like spicules. Various invertebrate species provided with setae or thin appendages are able to be captured, although minute crus- Introduction taceans up to 8 mm long are the most suitable prey. Multicellular animals almost universally feed by means of Transmission electron microscopy observations have been a digestive tract or a digestive cavity. Apart from some made during the digestion process. The prey is engulfed parasites directly living at the expense of their host, the in a few hours by the sponge cells, which migrate from only exceptions are the Pogonophores (deep-sea animals the whole body towards the prey and concentrate around relying on symbiotic chemoautotrophy and whose larvae it. A primary extracellular digestion possibly involving have a temporary digestive tract) and two groups of mi- the activity of sponge cells, autolysis of the prey and crophagous organisms relying on intracellular digestion, bacterial action results in the breaking down of the prey the minor Placozoa and, most importantly, sponges (Po- body. -
Animal Evolution: Trichoplax, Trees, and Taxonomic Turmoil
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Dispatch R1003 Dispatches Animal Evolution: Trichoplax, Trees, and Taxonomic Turmoil The genome sequence of Trichoplax adhaerens, the founding member of the into the same major classes (C, E/F enigmatic animal phylum Placozoa, has revealed that a surprising level of and B) as do those described from genetic complexity underlies its extremely simple body plan, indicating either Amphimedon [4]. Consistent with that placozoans are secondarily simple or that there is an undiscovered a more derived position, however, morphologically complex life stage. Trichoplax has a number of Antp superclass Hox genes that are absent David J. Miller1 and Eldon E. Ball2 but no other axial differentiation, from the sponge Amphimedon. resembling an amoeba. Grell [3] who These include the ‘ParaHox’ gene With the recent or imminent release formally described these common but Trox-2 [5] and the extended Hox of the whole genome sequences of inconspicuous marine organisms as family gene Not [6] known from a number of key animal species, this belonging to a new phylum, assumed previous work. Particularly intriguing is an exciting time for the ‘evo-devo’ that their simplicity is primary, and is the discovery in Trichoplax of many community. In the last twelve months, that they therefore must represent genes associated with neuroendocrine whole genome analyses of the a key stage in animal evolution. This function across the Bilateria; in cnidarian Nematostella vectensis, view is still held by several prominent common with Amphimedon [7], many the choanoflagellate Monosiga Trichoplax biologists, but has always elements of the post-synaptic scaffold brevicollis and the cephalochordate been contentious; the view that it is are present, but so too are channel Branchiostoma floridae (commonly derived from a more complex ancestor and receptor proteins not known from known as amphioxus) have been has recently been gaining momentum sponges.