Adducin in Tumorigenesis and Metastasis
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FK506-Binding Protein 12.6/1B, a Negative Regulator of [Ca2+], Rescues Memory and Restores Genomic Regulation in the Hippocampus of Aging Rats
This Accepted Manuscript has not been copyedited and formatted. The final version may differ from this version. A link to any extended data will be provided when the final version is posted online. Research Articles: Neurobiology of Disease FK506-Binding Protein 12.6/1b, a negative regulator of [Ca2+], rescues memory and restores genomic regulation in the hippocampus of aging rats John C. Gant1, Eric M. Blalock1, Kuey-Chu Chen1, Inga Kadish2, Olivier Thibault1, Nada M. Porter1 and Philip W. Landfield1 1Department of Pharmacology & Nutritional Sciences, University of Kentucky, Lexington, KY 40536 2Department of Cell, Developmental and Integrative Biology, University of Alabama at Birmingham, Birmingham, AL 35294 DOI: 10.1523/JNEUROSCI.2234-17.2017 Received: 7 August 2017 Revised: 10 October 2017 Accepted: 24 November 2017 Published: 18 December 2017 Author contributions: J.C.G. and P.W.L. designed research; J.C.G., E.M.B., K.-c.C., and I.K. performed research; J.C.G., E.M.B., K.-c.C., I.K., and P.W.L. analyzed data; J.C.G., E.M.B., O.T., N.M.P., and P.W.L. wrote the paper. Conflict of Interest: The authors declare no competing financial interests. NIH grants AG004542, AG033649, AG052050, AG037868 and McAlpine Foundation for Neuroscience Research Corresponding author: Philip W. Landfield, [email protected], Department of Pharmacology & Nutritional Sciences, University of Kentucky, 800 Rose Street, UKMC MS 307, Lexington, KY 40536 Cite as: J. Neurosci ; 10.1523/JNEUROSCI.2234-17.2017 Alerts: Sign up at www.jneurosci.org/cgi/alerts to receive customized email alerts when the fully formatted version of this article is published. -
Intra-Erythrocyte Cation Concentrations in Relation to the C1797T B-Adducin Polymorphism in a General Population
Journal of Human Hypertension (2007) 21, 387–392 & 2007 Nature Publishing Group All rights reserved 0950-9240/07 $30.00 www.nature.com/jhh ORIGINAL ARTICLE Intra-erythrocyte cation concentrations in relation to the C1797T b-adducin polymorphism in a general population T Richart1, L Thijs1, T Kuznetsova1, V Tikhonoff1,2, L Zagato3, P Lijnen1, R Fagard1, J Wang4, G Bianchi3 and JA Staessen1 1Division of Hypertension and Cardiovascular Rehabilitation, Department of Cardiovascular Diseases, Studies Coordinating Centre, University of Leuven, Leuven, Belgium; 2Department of Clinical and Experimental Medicine, University of Padua, Padua, Italy; 3Division of Nephrology, Dialysis and Hypertension, University Vita Salute San Raffaele, Milan, Italy and 4Centre for Epidemiological Studies and Clinical Trials, Ruijin Hospital, Shanghai Institute of Hypertension, Shanghai, China Genetic variability in the ADD1 (Gly460Trp) and ADD2 P ¼ 0.93). In men, iK, iMg and iNa did not differ according (C1797T) subunits of the cytoskeleton protein adducin to ADD1 genotypes. In men, iK (R 2 ¼ 0.128) increased plays a role in the pathogenesis of hypertension, with age and serum Na þ , but decreased with serum total possibly via changes in intracellular cation concentra- calcium and the daily intake of alcohol. iMg (R2 ¼ 0.087) tions. ADD2 1797CC homozygous men have decreased decreased with age, but increased with serum total erythrocyte count and hematocrit. We investigated calcium. After adjustment for these covariates (Pp0.04 possible association between intra-erythrocyte cations for all), findings in men for iK (CC versus T: 85.8 versus and the adducin polymorphisms. In 259 subjects (mean 87.3 mmol/l; P ¼ 0.14) and iMg (1.91 versus 1.82 mmol/l; age 47.7 years), we measured intra-erythrocyte Na þ P ¼ 0.03) remained consistent. -
Altered DNA Methylation in Children Born to Mothers with Rheumatoid
Rheumatoid arthritis Ann Rheum Dis: first published as 10.1136/annrheumdis-2018-214930 on 29 May 2019. Downloaded from EPIDEMIOLOGICAL SCIENCE Altered DNA methylation in children born to mothers with rheumatoid arthritis during pregnancy Hilal Ince-Askan, 1 Pooja R Mandaviya,2 Janine F Felix,3,4,5 Liesbeth Duijts,3,6,7 Joyce B van Meurs,2 Johanna M W Hazes,1 Radboud J E M Dolhain1 Handling editor Josef S ABSTRACT Key messages Smolen Objectives The main objective of this study was to determine whether the DNA methylation profile of ► Additional material is What is already known about this subject? published online only. To children born to mothers with rheumatoid arthritis (RA) is ► Adverse exposures in early life are associated view please visit the journal different from that of children born to mothers from the with later-life health. online (http:// dx. doi. org/ 10. general population. In addition, we aimed to determine Epigenetic changes are thought to be one of the 1136annrheumdis- 2018- whether any differences in methylation are associated ► 214930). underlying mechanisms. with maternal RA disease activity or medication use There is not much known about the during pregnancy. ► For numbered affiliations see consequences of maternal rheumatoid arthritis end of article. Methods For this study, genome-wide DNA (RA) on the offsprings’ long-term health. methylation was measured at cytosine-phosphate- Correspondence to guanine (CpG) sites, using the Infinium Illumina What does this study add? Hilal Ince-Askan, Rheumatology, HumanMethylation 450K BeadChip, in 80 blood samples Erasmus Medical Centre, ► DNA methylation is different in children born to from children (mean age=6.8 years) born to mothers Rotterdam 3000 CA, The mothers with RA compared with mothers from Netherlands; with RA. -
ADD1 Pt445) Antibody Catalogue No.:Abx326604
Datasheet Version: 1.0.0 Revision date: 02 Nov 2020 Alpha Adducin Phospho-Thr445 (ADD1 pT445) Antibody Catalogue No.:abx326604 Alpha Adducin (ADD1) (pT445) Antibody is a Rabbit Polyclonal against Alpha Adducin (ADD1) (pT445). Adducins are a family of cytoskeletal proteins encoded by three genes (alpha, beta, and gamma). Adducin acts as a heterodimer of the related alpha, beta, or gamma subunits. The protein encoded by this gene represents the alpha subunit. Alpha- and beta-adducin include a protease-resistant N-terminal region and a protease-sensitive, hydrophilic C-terminal region. Adducin binds with high affinity to Ca(2+)/calmodulin and is a substrate for protein kinases A and C. Target: Alpha Adducin Phospho-Thr445 (ADD1 pT445) Clonality: Polyclonal Target Modification: Thr445 Modification: Phosphorylation Reactivity: Human, Mouse, Rat Tested Applications: ELISA, IHC Host: Rabbit Recommended dilutions: IHC: 1/100 - 1/300, ELISA: 1/5000. Optimal dilutions/concentrations should be determined by the end user. Conjugation: Unconjugated Immunogen: Synthesized peptide derived from human Adducin α around the phosphorylation site of T445. Isotype: IgG Form: ForLiquid Reference Only Purification: Affinity Chromatography. Storage: Aliquot and store at -20°C. Avoid repeated freeze/thaw cycles. UniProt Primary AC: P35611 (UniProt, ExPASy) Q9QYC0 (UniProt, ExPASy) Gene Symbol: ADD1 GeneID: 118 v1.0.0 Abbexa Ltd, Cambridge, UK · Phone: +44 1223 755950 · Fax: +44 1223 755951 1 Abbexa LLC, Houston, TX, USA · Phone: +1 832 327 7413 www.abbexa.com · -
Predicting Gene Ontology Biological Process from Temporal Gene Expression Patterns Astrid Lægreid,1,4 Torgeir R
Methods Predicting Gene Ontology Biological Process From Temporal Gene Expression Patterns Astrid Lægreid,1,4 Torgeir R. Hvidsten,2 Herman Midelfart,2 Jan Komorowski,2,3,4 and Arne K. Sandvik1 1Department of Cancer Research and Molecular Medicine, Norwegian University of Science and Technology, N-7489 Trondheim, Norway; 2Department of Information and Computer Science, Norwegian University of Science and Technology, N-7491 Trondheim, Norway; 3The Linnaeus Centre for Bioinformatics, Uppsala University, SE-751 24 Uppsala, Sweden The aim of the present study was to generate hypotheses on the involvement of uncharacterized genes in biological processes. To this end,supervised learning was used to analyz e microarray-derived time-series gene expression data. Our method was objectively evaluated on known genes using cross-validation and provided high-precision Gene Ontology biological process classifications for 211 of the 213 uncharacterized genes in the data set used. In addition,new roles in biological process were hypothesi zed for known genes. Our method uses biological knowledge expressed by Gene Ontology and generates a rule model associating this knowledge with minimal characteristic features of temporal gene expression profiles. This model allows learning and classification of multiple biological process roles for each gene and can predict participation of genes in a biological process even though the genes of this class exhibit a wide variety of gene expression profiles including inverse coregulation. A considerable number of the hypothesized new roles for known genes were confirmed by literature search. In addition,many biological process roles hypothesi zed for uncharacterized genes were found to agree with assumptions based on homology information. -
Analysis of the Indacaterol-Regulated Transcriptome in Human Airway
Supplemental material to this article can be found at: http://jpet.aspetjournals.org/content/suppl/2018/04/13/jpet.118.249292.DC1 1521-0103/366/1/220–236$35.00 https://doi.org/10.1124/jpet.118.249292 THE JOURNAL OF PHARMACOLOGY AND EXPERIMENTAL THERAPEUTICS J Pharmacol Exp Ther 366:220–236, July 2018 Copyright ª 2018 by The American Society for Pharmacology and Experimental Therapeutics Analysis of the Indacaterol-Regulated Transcriptome in Human Airway Epithelial Cells Implicates Gene Expression Changes in the s Adverse and Therapeutic Effects of b2-Adrenoceptor Agonists Dong Yan, Omar Hamed, Taruna Joshi,1 Mahmoud M. Mostafa, Kyla C. Jamieson, Radhika Joshi, Robert Newton, and Mark A. Giembycz Departments of Physiology and Pharmacology (D.Y., O.H., T.J., K.C.J., R.J., M.A.G.) and Cell Biology and Anatomy (M.M.M., R.N.), Snyder Institute for Chronic Diseases, Cumming School of Medicine, University of Calgary, Calgary, Alberta, Canada Received March 22, 2018; accepted April 11, 2018 Downloaded from ABSTRACT The contribution of gene expression changes to the adverse and activity, and positive regulation of neutrophil chemotaxis. The therapeutic effects of b2-adrenoceptor agonists in asthma was general enriched GO term extracellular space was also associ- investigated using human airway epithelial cells as a therapeu- ated with indacaterol-induced genes, and many of those, in- tically relevant target. Operational model-fitting established that cluding CRISPLD2, DMBT1, GAS1, and SOCS3, have putative jpet.aspetjournals.org the long-acting b2-adrenoceptor agonists (LABA) indacaterol, anti-inflammatory, antibacterial, and/or antiviral activity. Numer- salmeterol, formoterol, and picumeterol were full agonists on ous indacaterol-regulated genes were also induced or repressed BEAS-2B cells transfected with a cAMP-response element in BEAS-2B cells and human primary bronchial epithelial cells by reporter but differed in efficacy (indacaterol $ formoterol . -
Role and Regulation of the P53-Homolog P73 in the Transformation of Normal Human Fibroblasts
Role and regulation of the p53-homolog p73 in the transformation of normal human fibroblasts Dissertation zur Erlangung des naturwissenschaftlichen Doktorgrades der Bayerischen Julius-Maximilians-Universität Würzburg vorgelegt von Lars Hofmann aus Aschaffenburg Würzburg 2007 Eingereicht am Mitglieder der Promotionskommission: Vorsitzender: Prof. Dr. Dr. Martin J. Müller Gutachter: Prof. Dr. Michael P. Schön Gutachter : Prof. Dr. Georg Krohne Tag des Promotionskolloquiums: Doktorurkunde ausgehändigt am Erklärung Hiermit erkläre ich, dass ich die vorliegende Arbeit selbständig angefertigt und keine anderen als die angegebenen Hilfsmittel und Quellen verwendet habe. Diese Arbeit wurde weder in gleicher noch in ähnlicher Form in einem anderen Prüfungsverfahren vorgelegt. Ich habe früher, außer den mit dem Zulassungsgesuch urkundlichen Graden, keine weiteren akademischen Grade erworben und zu erwerben gesucht. Würzburg, Lars Hofmann Content SUMMARY ................................................................................................................ IV ZUSAMMENFASSUNG ............................................................................................. V 1. INTRODUCTION ................................................................................................. 1 1.1. Molecular basics of cancer .......................................................................................... 1 1.2. Early research on tumorigenesis ................................................................................. 3 1.3. Developing -
Circular RNA Expression in Human Hematopoietic Cells Is Widespread
bioRxiv preprint doi: https://doi.org/10.1101/300293; this version posted April 12, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Circular RNA expression in human hematopoietic cells is widespread and cell-type specific Benoit P Nicolet1, Sander Engels1, Francesca Aglialoro1, Emile van den Akker1, Marieke von Lindern1 and Monika C Wolkers1,* 1 Department of Hematopoiesis, Sanquin Research and Landsteiner Laboratory, Academic Medical Centre (AMC), University of Amsterdam, Amsterdam, The Netherlands. * To whom correspondence should be addressed. M. Wolkers, Sanquin Research Department of Hematopoiesis, Plesmanlaan 125, 1066 CX Amsterdam, The Netherlands. Tel: +31-20-5127003; Fax: +31- 20-5123474; Email: [email protected]. bioRxiv preprint doi: https://doi.org/10.1101/300293; this version posted April 12, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. ABSTRACT Hematopoietic stem cells differentiate into a broad range of specialized blood cells. This process is tightly regulated and depends on transcription factors, micro-RNAs, and long non-coding RNAs. Recently, also circular RNA (circRNA) were found to regulate cellular processes. Their expression pattern and their identity is however less well defined. Here, we provide the first comprehensive analysis of circRNA expression in human hematopoietic progenitors, and in differentiated lymphoid and myeloid cells. We here show that the expression of circRNA is cell-type specific, and increases upon maturation. circRNA splicing variants can also be cell-type specific. -
Identification of Differentially Expressed Genes and Pathways in Mice Exposed to Mixed Field Neutron/Photon Radiation Constantinos G
Broustas et al. BMC Genomics (2018) 19:504 https://doi.org/10.1186/s12864-018-4884-6 RESEARCHARTICLE Open Access Identification of differentially expressed genes and pathways in mice exposed to mixed field neutron/photon radiation Constantinos G. Broustas1* , Andrew D. Harken2, Guy Garty2 and Sally A. Amundson1 Abstract Background: Radiation exposure due to the detonation of an improvised nuclear device remains a major security concern. Radiation from such a device involves a combination of photons and neutrons. Although photons will make the greater contribution to the total dose, neutrons will certainly have an impact on the severity of the exposure as they have high relative biological effectiveness. Results: We investigated the gene expression signatures in the blood of mice exposed to 3 Gy x-rays, 0.75 Gy of neutrons, or to mixed field photon/neutron with the neutron fraction contributing 5, 15%, or 25% of a total 3 Gy radiation dose. Gene ontology and pathway analysis revealed that genes involved in protein ubiquitination pathways were significantly overrepresented in all radiation doses and qualities. On the other hand, eukaryotic initiation factor 2 (EIF2) signaling pathway was identified as one of the top 10 ranked canonical pathways in neutron, but not pure x-ray, exposures. In addition, the related mTOR and regulation of EIF4/p70S6K pathways were also significantly underrepresented in the exposures with a neutron component, but not in x-ray radiation. The majority of the changed genes in these pathways belonged to the ribosome biogenesis and translation machinery and included several translation initiation factors (e.g. Eif2ak4, Eif3f), as well as 40S and 60S ribosomal subunits (e.g. -
Identification of Key Genes and Pathways for Alzheimer's Disease
Biophys Rep 2019, 5(2):98–109 https://doi.org/10.1007/s41048-019-0086-2 Biophysics Reports RESEARCH ARTICLE Identification of key genes and pathways for Alzheimer’s disease via combined analysis of genome-wide expression profiling in the hippocampus Mengsi Wu1,2, Kechi Fang1, Weixiao Wang1,2, Wei Lin1,2, Liyuan Guo1,2&, Jing Wang1,2& 1 CAS Key Laboratory of Mental Health, Institute of Psychology, Chinese Academy of Sciences, Beijing 100101, China 2 Department of Psychology, University of Chinese Academy of Sciences, Beijing 10049, China Received: 8 August 2018 / Accepted: 17 January 2019 / Published online: 20 April 2019 Abstract In this study, combined analysis of expression profiling in the hippocampus of 76 patients with Alz- heimer’s disease (AD) and 40 healthy controls was performed. The effects of covariates (including age, gender, postmortem interval, and batch effect) were controlled, and differentially expressed genes (DEGs) were identified using a linear mixed-effects model. To explore the biological processes, func- tional pathway enrichment and protein–protein interaction (PPI) network analyses were performed on the DEGs. The extended genes with PPI to the DEGs were obtained. Finally, the DEGs and the extended genes were ranked using the convergent functional genomics method. Eighty DEGs with q \ 0.1, including 67 downregulated and 13 upregulated genes, were identified. In the pathway enrichment analysis, the 80 DEGs were significantly enriched in one Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway, GABAergic synapses, and 22 Gene Ontology terms. These genes were mainly involved in neuron, synaptic signaling and transmission, and vesicle metabolism. These processes are all linked to the pathological features of AD, demonstrating that the GABAergic system, neurons, and synaptic function might be affected in AD. -
Systems-Level Identification of PKA-Dependent Signaling In
Systems-level identification of PKA-dependent PNAS PLUS signaling in epithelial cells Kiyoshi Isobea, Hyun Jun Junga, Chin-Rang Yanga,J’Neka Claxtona, Pablo Sandovala, Maurice B. Burga, Viswanathan Raghurama, and Mark A. Kneppera,1 aEpithelial Systems Biology Laboratory, Systems Biology Center, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD 20892-1603 Edited by Peter Agre, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, and approved August 29, 2017 (received for review June 1, 2017) Gproteinstimulatoryα-subunit (Gαs)-coupled heptahelical receptors targets are as yet unidentified. Some of the known PKA targets regulate cell processes largely through activation of protein kinase A are other protein kinases and phosphatases, meaning that PKA (PKA). To identify signaling processes downstream of PKA, we de- activation is likely to result in indirect changes in protein phos- leted both PKA catalytic subunits using CRISPR-Cas9, followed by a phorylation manifest as a signaling network, the details of which “multiomic” analysis in mouse kidney epithelial cells expressing the remain unresolved. To identify both direct and indirect targets of Gαs-coupled V2 vasopressin receptor. RNA-seq (sequencing)–based PKA in mammalian cells, we used CRISPR-Cas9 genome editing transcriptomics and SILAC (stable isotope labeling of amino acids in to introduce frame-shifting indel mutations in both PKA catalytic cell culture)-based quantitative proteomics revealed a complete loss subunit genes (Prkaca and Prkacb), thereby eliminating PKA-Cα of expression of the water-channel gene Aqp2 in PKA knockout cells. and PKA-Cβ proteins. This was followed by use of quantitative SILAC-based quantitative phosphoproteomics identified 229 PKA (SILAC-based) phosphoproteomics to identify phosphorylation phosphorylation sites. -
Targeted Disruption of the Adducin Gene ( Add2) Causes Red Blood Cell
Proc. Natl. Acad. Sci. USA Vol. 96, pp. 10717–10722, September 1999 Cell Biology Targeted disruption of the  adducin gene (Add2) causes red blood cell spherocytosis in mice DIANA M. GILLIGAN*†,LARISSA LOZOVATSKY*, BABETTE GWYNN‡,CARLO BRUGNARA§,NARLA MOHANDAS¶, AND LUANNE L. PETERS‡ *Department of Internal Medicine (Hematology), Yale University School of Medicine, New Haven, CT 06510; ‡The Jackson Laboratory, Bar Harbor, ME 04609; §Department of Laboratory Medicine, Children’s Hospital, Boston, MA 02115; and ¶Lawrence Berkeley National Laboratory, University of California, Berkeley, CA 94720 Communicated by Edward A. Adelberg, Yale University, New Haven, CT, July 8, 1999 (received for review May 25, 1999) ABSTRACT Adducins are a family of cytoskeleton pro- was analyzed by Southern blotting using a flanking EcoRV- teins encoded by three genes (␣, , ␥). In a comprehensive EcoRI fragment as the hybridization probe (Fig. 3B). Blasto- assay of gene expression, we show the ubiquitous expression cyst injection and embryo transfer were performed by using of ␣- and ␥-adducins in contrast to the restricted expression standard techniques (13). Male chimeras were mated to of -adducin. -adducin is expressed at high levels in brain C57BL͞6J females to generate heterozygotes. Progeny were and hematopoietic tissues (bone marrow in humans, spleen in genotyped by using PCR on tail biopsies. mice). To elucidate adducin’s role in vivo, we created -ad- Red Blood Cell Analysis. Blood counts were determined by ducin null mice by gene targeting, deleting exons 9–13. A using a Technicon H3 analyzer (Bayer Diagnostics, Tarrytown, 55-kDa chimeric polypeptide is produced from the first eight NY). Smears were stained with Wright-Giemsa (Sigma).