Chemical and Physical Transformations of Mercury in the Ocean: a Review
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Protein Components of the Microbial Mercury Methylation Pathway
Protein Components of the Microbial Mercury Methylation Pathway ______________________________________________________________ A Dissertation presented to the faculty of the Graduate School at the University of Missouri - Columbia ____________________________________________________ In partial fulfillment of the requirements for the degree Doctor of Philosophy __________________________________________ by Steven D. Smith Dr. Judy D. Wall, Dissertation Supervisor December 2015 The undersigned, appointed by the dean of the Graduate School, have examined the dissertation titled Protein Components of the Microbial Mercury Methylation Pathway Presented by Steven D. Smith, a candidate for the degree of doctor of philosophy, and hereby certify that, in their opinion, it is worthy of acceptance. ____________________________________________ Dr. Judy D. Wall ____________________________________________ Dr. David W. Emerich ____________________________________________ Dr. Thomas P. Quinn ____________________________________________ Dr. Michael J. Calcutt Acknowledgements I would first like to thank my parents and family for their constant support and patience. They have never failed to be there for me. I would like to thank all members of the Wall Lab. At one time or another each one of them has helped me in some way. In particular I would like to thank Barb Giles for her insight into the dynamics of the lab and for her support of me through these years. I am greatly appreciative to Dr. Judy Wall for the opportunity to earn my PhD in her lab. Her constant support and unending confidence in me has been a great source of motivation. It has been an incredible learning experience that I will carry with me and draw from for the rest of my life. Table of Contents Acknowledgements ………………………………………………………………………………………………………… ii List of Figures …………………………………………………………………………………………………………………. -
Understanding Mercury Transport and Transformation by Computational Simulations
University of Tennessee, Knoxville TRACE: Tennessee Research and Creative Exchange Doctoral Dissertations Graduate School 8-2017 Understanding Mercury Transport and Transformation by Computational Simulations Jing Zhou University of Tennessee, Knoxville, [email protected] Follow this and additional works at: https://trace.tennessee.edu/utk_graddiss Recommended Citation Zhou, Jing, "Understanding Mercury Transport and Transformation by Computational Simulations. " PhD diss., University of Tennessee, 2017. https://trace.tennessee.edu/utk_graddiss/4675 This Dissertation is brought to you for free and open access by the Graduate School at TRACE: Tennessee Research and Creative Exchange. It has been accepted for inclusion in Doctoral Dissertations by an authorized administrator of TRACE: Tennessee Research and Creative Exchange. For more information, please contact [email protected]. To the Graduate Council: I am submitting herewith a dissertation written by Jing Zhou entitled "Understanding Mercury Transport and Transformation by Computational Simulations." I have examined the final electronic copy of this dissertation for form and content and recommend that it be accepted in partial fulfillment of the equirr ements for the degree of Doctor of Philosophy, with a major in Life Sciences. Jeremy Smith, Major Professor We have read this dissertation and recommend its acceptance: Jerry Parks, Xiaolin Cheng, Hong Guo, Francisco Barrera Accepted for the Council: Dixie L. Thompson Vice Provost and Dean of the Graduate School (Original signatures are on file with official studentecor r ds.) Understanding Mercury Transport and Transformation by Computational Simulations A Dissertation Presented for the Doctor of Philosophy Degree The University of Tennessee, Knoxville Jing Zhou August 2017 Copyright © 2017 by Jing Zhou All rights reserved. -
9241571012 Eng.Pdf
THE ENVIRONMENTAL HEALTH CRITERIA SERIES Acrolein (No. 127, 1991) 2,4-Dichlorophenoxyacetic acid - Acrylamide (No. 49, 1985) environmental aspects (No. 84, 1989) Acrylonitrile (No. 28, 1983) DDT and its derivatives (No.9, 1979) Aldicarb (No. 121, 1991) DDT and its derivatives - environmental Aldrin and dieldrin (No. 91 , 1989) aspects (No. 83, 1989) Allethrins (No. 87, 1989) Deltamethrin (No. 97, 1990) Alpha-cypermethrin (No. 142, 1992) Diaminotoluenes (No. 74, 1987) Ammonia (No. 54, 1986) Dichlorvos (No. 79, 1988) Arsenic (No. 18, 1981) Diethylhexyl phthalate (No. 131, 1992) Asbestos and other natural mineral fibres Dimethoate (No. 90, 1989) (No. 53 , 1986) Dimethylformamide (No. 114, 1991) Barium (No. 107 , 1990) Dimethyl sulfate (No. 48, 1985) Beryllium (No. 106, 1990) Diseases of suspected chemical etiology and Biotoxins, aquatic (marine and freshwater) their prevention, principles of studif,s on (No. 37, 1984) (No. 72 , 1987) Butanols - four isomers (No. 65, 1987) Dithiocarbamate pesticides, ethylenethio Cadmium (No. 134, 1992) urea, and propylenethiourea: a general Cadmium- environmental aspects (No. 135, introduction (No. 78 , 1988) 1992) Electromagnetic Fields (No. 137, 1992) Camphechlor (No. 45, 1984) Endosulfan (No. 40, 1984) Carbamate pesticides: a general introduction Endrin (No. 130, 1992) (No. 64, 1986) Environmental epidemiology, guidelines on Carbon disulfide (No. I 0, 1979) studies in (No. 27, 1983) Carbon monoxide (No. 13, 1979) Epichlorohydrin (No. 33, 1984) Carcinogens, summary report on the evalu Ethylene oxide (No. 55 , 1985) ation of short-term in vitro tests (No. 47, Extremely low frequency (ELF) fields 1985) (No. 35, 1984) Carcinogens, summary report on the evalu Fenitrothion (No. 133, 1992) ation of short-term in vivo tests (No. -
Genome-Resolved Metagenomics and Detailed Geochemical Speciation
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.03.933291; this version posted February 4, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Genome-resolved metagenomics and detailed geochemical speciation analyses yield 2 new insights into microbial mercury cycling in geothermal springs 3 4 RUNNING TITLE: Microbial mercury cycling in acid warm springs 5 6 Caitlin M. Gionfriddo1,+*, Matthew B. Stott2, #, Jean F. Power2, Jacob M. Ogorek3, David 7 P. Krabbenhoft3, Ryan Wick4, Kathryn Holt4, Lin-Xing Chen5, Brian C. Thomas5, Jillian 8 F. Banfield1, 5, 6 and John W. Moreau1, ‡ 9 10 1School of Earth Sciences, The University of Melbourne, Parkville, VIC, Australia 11 2GNS Science, Wairakei Research Centre, Taupō, New Zealand 12 3Wisconsin Water Science Center, U.S. Geological Survey, Middleton, WI, USA 13 4Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and 14 Biotechnology Institute, University of Melbourne, Victoria 3010, Australia 15 5Department of Earth and Planetary Science, UC Berkeley, Berkeley, CA, USA 16 6Department of Environmental Science, Policy, and Management, University of California, 17 Berkeley, California 94720, United States 18 19 20 21 22 23 Current affiliations: 24 +Oak Ridge National Laboratory, Biosciences Division, Oak Ridge, TN, USA 25 # School of Biological Sciences, University of Canterbury, Christchurch, New Zealand 26 ‡ School of Geographical and Earth Sciences, University of Glasgow, UK 27 28 *Corresponding author: [email protected] 29 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.02.03.933291; this version posted February 4, 2020. -
Geobacteraceae Are Important Members of Mercury-Methylating Microbial Communities of Sediments Impacted by Waste Water Releases
The ISME Journal (2018) 12:802–812 https://doi.org/10.1038/s41396-017-0007-7 ARTICLE Geobacteraceae are important members of mercury-methylating microbial communities of sediments impacted by waste water releases 1 2 1 1 1 3 Andrea G. Bravo ● Jakob Zopfi ● Moritz Buck ● Jingying Xu ● Stefan Bertilsson ● Jeffra K. Schaefer ● 4 4,5 John Poté ● Claudia Cosio Received: 19 May 2017 / Revised: 29 September 2017 / Accepted: 18 October 2017 / Published online: 10 January 2018 © The Author(s) 2018. This article is published with open access Abstract Microbial mercury (Hg) methylation in sediments can result in bioaccumulation of the neurotoxin methylmercury (MMHg) in aquatic food webs. Recently, the discovery of the gene hgcA, required for Hg methylation, revealed that the diversity of Hg methylators is much broader than previously thought. However, little is known about the identity of Hg-methylating microbial organisms and the environmental factors controlling their activity and distribution in lakes. Here, we combined high-throughput sequencing of 16S rRNA and hgcA genes with the chemical characterization of sediments impacted by a 1234567890 waste water treatment plant that releases significant amounts of organic matter and iron. Our results highlight that the ferruginous geochemical conditions prevailing at 1–2 cm depth are conducive to MMHg formation and that the Hg- methylating guild is composed of iron and sulfur-transforming bacteria, syntrophs, and methanogens. Deltaproteobacteria, notably Geobacteraceae, dominated the hgcA carrying communities, while sulfate reducers constituted only a minor component, despite being considered the main Hg methylators in many anoxic aquatic environments. Because iron is widely applied in waste water treatment, the importance of Geobacteraceae for Hg methylation and the complexity of Hg- methylating communities reported here are likely to occur worldwide in sediments impacted by waste water treatment plant discharges and in iron-rich sediments in general. -
A Study of the Effects of Diet on Human Gut Microbial Community Structure and Mercury Metabolism
A study of the effects of diet on human gut microbial community structure and mercury metabolism A thesis submitted to the Faculty of Graduate and Postdoctoral studies In the partial fulfillment of the Requirements For the Degree of Masters In the Environmental sustainability Graduate Program Institute of Environment/Faculty of Biology University of Ottawa Ottawa, Canada By RIA SAHA Supervisors: Dr. Alexandre Poulain & Prof. Laurie Chan © Ria Saha, Ottawa, Canada, 2017 Table of Contents: Abstract…………………………………………………………………………………….…. IV List of Figures……………………………………………………………………………….…VI List of Tables………………………………………………………………………………....VIII List of Abbreviations…………………………………………………………………………..IX Acknowledgements…………………………………………………………………………….XI Introduction…………………………………………………………………………………….11 Literature review Microbial ecology of human gastrointestinal tract……………………………………….13 Gut environment……………………………………………………………………………17 Human gut flora and diet…………………………………………………………………..17 Specific foods………………………………………………………………………………..20 Dietary pattern……………………………………………………………………………...21 Food constituents…………………………………………………………………………...23 Mercury and its compounds………………………………………………………………..27 Methylmercury toxicity……………………………………………………………………..29 Developmental neurotoxicity…………………………………………..…………………...29 Mechanisms of transport and metabolism of MeHg………………………..…………….31 Methylmercury and gut microbiota…………………………………………………...…...33 Genetic basis for mercury methylation………………………………………….……...….36 Biochemical mechanisms of bacterial resistance to methylmercury……………………..39 -
1 Expanded Phylogenetic Diversity and Metabolic Flexibility of Microbial Mercury
bioRxiv preprint doi: https://doi.org/10.1101/2020.01.16.909358; this version posted January 17, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Expanded Phylogenetic Diversity and Metabolic Flexibility of Microbial Mercury 2 Methylation 3 4 Elizabeth A. McDaniel1, Benjamin Peterson1, Sarah L.R. Stevens3,4, Patricia Q. Tran1,2, 5 Karthik Anantharaman1, Katherine D. McMahon1,5* 6 7 1 Department of Bacteriology, University of Wisconsin – Madison, Madison, WI 8 2 Department of Integrative Biology, University of Wisconsin – Madison, Madison, WI 9 3 Wisconsin Institute for Discovery, University of Wisconsin – Madison, Madison WI 10 4 American Family Insurance Data Science Institute, University of Wisconsin – Madison, 11 Madison WI 12 5 Department of Civil and Environmental Engineering, University of Wisconsin – 13 Madison, Madison WI 14 * Corresponding Author: [email protected] 15 16 17 Running title: Diversity of microbial mercury methylation 18 19 20 21 22 23 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.01.16.909358; this version posted January 17, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 24 ABSTRACT 25 Methylmercury is a potent, bioaccumulating neurotoxin that is produced by specific 26 microorganisms by methylation of inorganic mercury released from anthropogenic 27 sources. -
Expanded Phylogenetic Diversity and Metabolic Flexibility of Mercury-Methylating Microorganisms
RESEARCH ARTICLE Applied and Environmental Science crossm Expanded Phylogenetic Diversity and Metabolic Flexibility of Mercury-Methylating Microorganisms Elizabeth A. McDaniel,a Benjamin D. Peterson,a,f Sarah L. R. Stevens,c,d Patricia Q. Tran,a,b Karthik Anantharaman,a Downloaded from Katherine D. McMahona,e aDepartment of Bacteriology, University of Wisconsin—Madison, Madison, Wisconsin, USA bDepartment of Integrative Biology, University of Wisconsin—Madison, Madison, Wisconsin, USA cWisconsin Institute for Discovery, University of Wisconsin—Madison, Madison, Wisconsin, USA dAmerican Family Insurance Data Science Institute, University of Wisconsin—Madison, Madison, Wisconsin, USA eDepartment of Civil and Environmental Engineering, University of Wisconsin—Madison, Madison, Wisconsin, USA f Environmental Chemistry and Technology Program, University of Wisconsin—Madison, Madison, Wisconsin, USA http://msystems.asm.org/ ABSTRACT Methylmercury is a potent bioaccumulating neurotoxin that is pro- duced by specific microorganisms that methylate inorganic mercury. Methylmer- cury production in diverse anaerobic bacteria and archaea was recently linked to the hgcAB genes. However, the full phylogenetic and metabolic diversity of mercury-methylating microorganisms has not been fully unraveled due to the limited number of cultured experimentally verified methylators and the limita- tions of primer-based molecular methods. Here, we describe the phylogenetic di- versity and metabolic flexibility of putative mercury-methylating microorganisms by hgcAB identification in publicly available isolate genomes and metagenome- assembled genomes (MAGs) as well as novel freshwater MAGs. We demonstrate on November 5, 2020 by guest that putative mercury methylators are much more phylogenetically diverse than previously known and that hgcAB distribution among genomes is most likely due to several independent horizontal gene transfer events. -
Characteristics of Archaea and Bacteria in Rice Rhizosphere Along a Mercury Gradient
Science of the Total Environment 650 (2019) 1640–1651 Contents lists available at ScienceDirect Science of the Total Environment journal homepage: www.elsevier.com/locate/scitotenv Characteristics of archaea and bacteria in rice rhizosphere along a mercury gradient Ming Ma a,b,HongxiaDua,c,TaoSuna, Siwei An a, Guang Yang a,DingyongWanga,⁎ a College of Resources and Environment, Southwest University, Chongqing 400715, China b School of Environment, Jinan University, Guangzhou 510632, China c Research Center of Bioenergy and Bioremediation, Southwest University, Chongqing 400715, China HIGHLIGHTS GRAPHICAL ABSTRACT • Communities of bacteria and archaea in Hg-polluted rice rhizosphere were stud- ied firstly. • Bacteria between high and low-Hg sites clustered together respectively, so did archaea. • merA abundance was significant higher in high-Hg sites than low-Hg sites. • Methanogen Hg-methylators could po- tentially be affiliated to Methanosarcina. article info abstract Article history: Several strains of archaea have the ability to methylate or resist mercury (Hg), and the paddy field is regarded to Received 25 May 2018 be conducive to Hg methylation. However, our knowledge of Hg-methylating or Hg-resistant archaea in paddy Received in revised form 10 July 2018 soils is very limited so far. Therefore, the distribution of archaea and bacteria in the rhizosphere (RS) and bulk Accepted 13 July 2018 soil (BS) of the rice growing in Xiushan Hg-mining area of southwest China was investigated. Bacterial and ar- Available online 24 July 2018 chaeal 16S rRNA gene amplicon sequencing of the rice rhizosphere along the Hg gradient was conducted. THg fi Editor: Xinbin Feng concentrations in RS were signi cantly higher than that in BS at site S1 and S2, while MeHg concentrations in RS was always higher than that in BS, except S6. -
Current Opinion in Chemical Biology Vitamin B12 in the Spotlight Again
Vitamin B 12 in the spotlight again The MIT Faculty has made this article openly available. Please share how this access benefits you. Your story matters. Citation Bridwell-Rabb, Jennifer and Catherine L. Drennan, "Vitamin B12 in the spotlight again." Current Opinion in Chemical Biology 37 (April 2017): p. 63-70 doi. 10.1016/j.cbpa.2017.01.013 ©2017 Authors As Published https://dx.doi.org/10.1016/J.CBPA.2017.01.013 Publisher Elsevier BV Version Author's final manuscript Citable link https://hdl.handle.net/1721.1/126368 Terms of Use Creative Commons Attribution-NonCommercial-NoDerivs License Detailed Terms http://creativecommons.org/licenses/by-nc-nd/4.0/ HHS Public Access Author manuscript Author ManuscriptAuthor Manuscript Author Curr Opin Manuscript Author Chem Biol. Author Manuscript Author manuscript; available in PMC 2018 April 01. Published in final edited form as: Curr Opin Chem Biol. 2017 April ; 37: 63–70. doi:10.1016/j.cbpa.2017.01.013. Current Opinion in Chemical Biology Vitamin B12 in the Spotlight Again Jennifer Bridwell-Rabb*,1,2,3 and Catherine L. Drennan*,1,2,3 1Department of Chemistry, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, USA 2Department of Biology, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, USA 3Howard Hughes Medical Institute, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, USA Abstract The ability of cobalamin to coordinate different upper axial ligands gives rise to a diversity of reactivity. Traditionally, adenosylcobalamin is associated with radical-based rearrangements, and methylcobalamin with methyl cation transfers. Recently, however, a new role for adenosylcobalamin has been discovered as a light sensor, and a methylcobalamin-dependent enzyme has been identified that is suggested to transfer a methyl anion. -
Mercury Methylation Versus Demethylation: Main Processes Involved
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Biblioteca Digital do IPB In: Methylmercury: Formation, Sources and Health Effects ISBN: 978-1-61761-838-3 Editors: Andrew P. Clampet ©2010 Nova Science Publishers, Inc. Chapter 7 MERCURY METHYLATION VERSUS DEMETHYLATION: MAIN PROCESSES INVOLVED Susana Río Segade1, Teresa Dias2 and Elsa Ramalhosa2 1Estación de Viticultura e Enoloxía de Galicia (EVEGA), Ponte San Clodio s/n, Leiro, -Ourense, Spain 2CIMO, School of Agriculture, Polytechnic Institute of Bragança, Campus de Santa Apolónia, Apartado Bragança, Portugal ABSTRACT It is well known that mercury presents high toxicity, causing a great damage to the environment and living organisms; however, its properties depend on the mercury species present. Organomercury compounds, where methylmercury is included, cause more concern. Since 60-70’s, several methylation mechanisms are known. Generally, methylmercury can be formed naturally in the aquatic environment by two general pathways: chemical methylation (abiotic) and microbial (biotic) processes. At the same time, methylmercury can be also decomposed abiotically or by the action of several demethylating microbes, or demethylators, ranging from anaerobes to aerobes. Regarding the biotic methylmercury demethylation, two distinct vias - oxidative and reductive - might be used by those microorganisms, differing in the final products obtained. In relation to the reductive processes, two pathways might occur. The first one involves the mercury resistance operon (mer) whereas the second one involves sulfide ions; however, the former is considered to be the most common pathway. Regarding the mer operon, some bacteria only carry on a narrow-spectrum operon (merA), being only able to reduce inorganic mercury (Hg(II)) to elemental mercury (Hg0). -
Mercury in Drinking-Water, Background Document for Development of WHO Guidelines for Drinking-Water Quality, Was Prepared by Mr J.K
WHO/SDE/WSH/05.08/10 English only Mercury in Drinking-water Background document for development of WHO Guidelines for Drinking-water Quality © World Health Organization 2005 The illustration on the cover page is extracted from Rescue Mission: Planet Earth,© Peace Child International 1994; used by permission. This document may be freely reviewed, abstracted, reproduced and translated in part or in whole but not for sale or for use in conjunction with commercial purposes. Inquiries should be addressed to: [email protected]. The designations employed and the presentation of the material in this document do not imply the expression of any opinion whatsoever on the part of the World Health Organization concerning the legal status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries. The mention of specific companies or of certain manufacturers’ products does not imply that they are endorsed or recommended by the World Health Organization in preference to others of a similar nature that are not mentioned. Errors and omissions excepted, the names of proprietary products are distinguished by initial capital letters. The World Health Organization does not warrant that the information contained in this publication is complete and correct and shall not be liable for any damages incurred as a result of its use. Preface One of the primary goals of WHO and its member states is that “all people, whatever their stage of development and their social and economic conditions, have the right to have access to an adequate supply of safe drinking water.” A major WHO function to achieve such goals is the responsibility “to propose ..