Health and Condition in Fish: the Influence of Lipids on Membrane Competency and Immune Response
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Lipid Remodelling in the Reef-Building Honeycomb Worm, Sabellaria Alveolata, Reflects Acclimation and Local Adaptation to Temperature Anna P
Lipid remodelling in the reef-building honeycomb worm, Sabellaria alveolata, reflects acclimation and local adaptation to temperature Anna P. Muir, Flavia L. D. Nunes, Stanislas F. Dubois, Fabrice Pernet To cite this version: Anna P. Muir, Flavia L. D. Nunes, Stanislas F. Dubois, Fabrice Pernet. Lipid remodelling in the reef-building honeycomb worm, Sabellaria alveolata, reflects acclimation and local adaptation to tem- perature. Scientific Reports, Nature Publishing Group, 2016, 6, pp.35669. 10.1038/srep35669. hal- 01483198 HAL Id: hal-01483198 https://hal.archives-ouvertes.fr/hal-01483198 Submitted on 31 Dec 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution - NoDerivatives| 4.0 International License www.nature.com/scientificreports OPEN Lipid remodelling in the reef- building honeycomb worm, Sabellaria alveolata, reflects Received: 29 April 2016 Accepted: 28 September 2016 acclimation and local adaptation Published: 20 October 2016 to temperature Anna P. Muir1,2, Flavia L. D. Nunes1,3, Stanislas F. Dubois3 & Fabrice Pernet4 Acclimation and adaptation, which are key to species survival in a changing climate, can be observed in terms of membrane lipid composition. Remodelling membrane lipids, via homeoviscous adaptation (HVA), counteracts membrane dysfunction due to temperature in poikilotherms. -
TAG Operational Structure
PARROT TAXON ADVISORY GROUP (TAG) Regional Collection Plan 5th Edition 2020-2025 Sustainability of Parrot Populations in AZA Facilities ...................................................................... 1 Mission/Objectives/Strategies......................................................................................................... 2 TAG Operational Structure .............................................................................................................. 3 Steering Committee .................................................................................................................... 3 TAG Advisors ............................................................................................................................... 4 SSP Coordinators ......................................................................................................................... 5 Hot Topics: TAG Recommendations ................................................................................................ 8 Parrots as Ambassador Animals .................................................................................................. 9 Interactive Aviaries Housing Psittaciformes .............................................................................. 10 Private Aviculture ...................................................................................................................... 13 Communication ........................................................................................................................ -
Lipid Bilayer, with the Nonpolar Regions of the Lipids Facing Inward
Chapter 7 Membranes: Their Structure, Function, and Chemistry Lectures by Kathleen Fitzpatrick Simon Fraser University © 2012 Pearson Education, Inc. Membranes: Their Structure, Function, and Chemistry • Membranes define the boundaries of a cell, and its internal compartments • Membranes play multiple roles in the life of a cell © 2012 Pearson Education, Inc. Figure 7-1A © 2012 Pearson Education, Inc. Figure 7-1B © 2012 Pearson Education, Inc. The Functions of Membranes • 1. Define boundaries of a cell and organelles and act as permeability barriers • 2. Serve as sites for biological functions such as electron transport • 3. Possess transport proteins that regulate the movement of substances into and out of cells and organelles © 2012 Pearson Education, Inc. The Functions of Membranes (continued) • 4. Contain protein molecules that act as receptors to detect external signals • 5. Provide mechanisms for cell-to-cell contact, adhesion, and communication © 2012 Pearson Education, Inc. Figure 7-2 © 2012 Pearson Education, Inc. Models of Membrane Structure: An Experimental Approach • The development of electron microscopy in the 1950s was important for understanding membrane structure • The fluid mosaic model is thought to be descriptive of all biological membranes • The model envisions a membrane as two fluid layers of lipids with proteins within and on the layers © 2012 Pearson Education, Inc. Overton and Langmuir: Lipids Are Important Components of Membranes • In the 1890s Overton observed the easy penetration of lipid-soluble substances into cells and concluded that the cell surface had some kind of lipid “coat” on it • Langmuir studied phospholipids and found that they were amphipathic and reasoned that they must orient on water with the hydrophobic tails away from the water © 2012 Pearson Education, Inc. -
Epinephelus Coioides) from Northern Oman
490 NOAA First U.S. Commissioner National Marine Fishery Bulletin established 1881 of Fisheries and founder Fisheries Service of Fishery Bulletin Abstract—Age, growth, and monthly reproductive characteristics were Demographic profile of an overexploited determined for the orange-spotted serranid, the orange-spotted grouper grouper (Epinephelus coioides) from northern Oman. This species is char- (Epinephelus coioides), from northern Oman acterized by a prevalence of females (1–11 years old), and males make up 1,2 6.5% of the total sample. Growth pa- Jennifer L. McIlwain rameters indicate a typical pattern Aisha Ambu-ali1 for groupers with a low growth co- Nasr Al Jardani1 efficient (K=0.135). The trajectory of 3 the von Bertalanffy growth function Andrew. R. Halford was almost linear with no evidence Hamed S. Al-Oufi4 of asymptotic growth. Estimates of David A. Feary (contact author)5 mortality revealed a low natural mortality of 0.14/year but a high Email address for contact author: [email protected] fishing mortality of 0.59/year. More alarming was the high rate of exploi- 1 Department of Marine Science and Fisheries 4 tation (0.81/year), considered unsus- Ministry of Agriculture and Fisheries College of Agricultural and Marine Sciences tainable for a slow-growing grouper. P.O. Box 1700, Muscat 111 Sultan Qaboos University The population off southern Oman Sultanate of Oman P.O. Box 34, Al-Khod 123 is diandric protogynous, and sex 5 School of Life Sciences Sultanate of Oman change takes place between 449 and University of Nottingham 748 mm in total length (TL) or over 2 Department of Environment and Agriculture University Park a period of 4–8 years. -
Objective Record of Epinephelus Marginatus (Serranidae: Epinephelinae) from the Sultanate of Oman (Arabian Sea)
Ichthyological note Objective record of Epinephelus marginatus (Serranidae: Epinephelinae) from the Sultanate of Oman (Arabian Sea) © SFI © by Submitted: 25 May 2020 Accepted: 21 Aug. 2020 * Editor: R. Causse Philippe BÉAREZ (1), Marion I. MENNESSON (2) & Eric PELLÉ (3) Résumé. – Signalement objectif d’Epinephelus marginatus (Serra- nidae : Epinephelinae) sur la côte du Sultanat d’Oman (mer d’Ara- bie). Deux spécimens (268-665 mm de longueur standard) du mérou Epinephelus marginatus (Lowe, 1834) ont été prélevés au marché aux poissons de Salalah, dans le Sultanat d’Oman. Ces spécimens confirment la présence de l’espèce en Oman et représentent son signalement le plus au nord dans l’océan Indien. Key words. – Epinephelinae – Epinephelus marginatus – Dusky grouper – New record – Oman – Indian Ocean. Groupers (subfamily Epinephelinae) include 185 valid species (Fricke et al., 2020). Most of them are among the most prized fish- es and are subject to considerable fishing pressure throughout their range (Craig et al., 2011; Sadovy de Mitcheson et al., 2012). The Figure 1. – Map of the Arabian Sea with the location of Salalah, Dhofar, in the Sultanate of Oman. dusky grouper, Epinephelus marginatus (Lowe, 1834) is no excep- tion to this rule; it is classified by the IUCN as Endangered in the MATERIALS AND METHODS Mediterranean (Cornish and Harmelin-Vivien, 2011) and Vulner- able at global scale (Pollard et al., 2018), and its capture is subject Two specimens were purchased at the fish market of Sala- to protective measures in several countries. lah, Dhofar, Sultanate of Oman (Fig. 1): the largest one (665 mm The dusky grouper is not only an iconic demersal species of standard length (SL)) on 7 Jan. -
An Overview of Lipid Membrane Models for Biophysical Studies
biomimetics Review Mimicking the Mammalian Plasma Membrane: An Overview of Lipid Membrane Models for Biophysical Studies Alessandra Luchini 1 and Giuseppe Vitiello 2,3,* 1 Niels Bohr Institute, University of Copenhagen, Universitetsparken 5, 2100 Copenhagen, Denmark; [email protected] 2 Department of Chemical, Materials and Production Engineering, University of Naples Federico II, Piazzale Tecchio 80, 80125 Naples, Italy 3 CSGI-Center for Colloid and Surface Science, via della Lastruccia 3, 50019 Sesto Fiorentino (Florence), Italy * Correspondence: [email protected] Abstract: Cell membranes are very complex biological systems including a large variety of lipids and proteins. Therefore, they are difficult to extract and directly investigate with biophysical methods. For many decades, the characterization of simpler biomimetic lipid membranes, which contain only a few lipid species, provided important physico-chemical information on the most abundant lipid species in cell membranes. These studies described physical and chemical properties that are most likely similar to those of real cell membranes. Indeed, biomimetic lipid membranes can be easily prepared in the lab and are compatible with multiple biophysical techniques. Lipid phase transitions, the bilayer structure, the impact of cholesterol on the structure and dynamics of lipid bilayers, and the selective recognition of target lipids by proteins, peptides, and drugs are all examples of the detailed information about cell membranes obtained by the investigation of biomimetic lipid membranes. This review focuses specifically on the advances that were achieved during the last decade in the field of biomimetic lipid membranes mimicking the mammalian plasma membrane. In particular, we provide a description of the most common types of lipid membrane models used for biophysical characterization, i.e., lipid membranes in solution and on surfaces, as well as recent examples of their Citation: Luchini, A.; Vitiello, G. -
Membrane Proteins Are Associated with the Membrane of a Cell Or Particular Organelle and Are Generally More Problematic to Purify Than Water-Soluble Proteins
Strategies for the Purification of Membrane Proteins Sinéad Marian Smith Department of Clinical Medicine, School of Medicine, Trinity College Dublin, Ireland. Email: [email protected] Abstract Although membrane proteins account for approximately 30 % of the coding regions of all sequenced genomes and play crucial roles in many fundamental cell processes, there are relatively few membranes with known 3D structure. This is likely due to technical challenges associated with membrane protein extraction, solubilization and purification. Membrane proteins are classified based on the level of interaction with membrane lipid bilayers, with peripheral membrane proteins associating non- covalently with the membrane, and integral membrane proteins associating more strongly by means of hydrophobic interactions. Generally speaking, peripheral membrane proteins can be purified by milder techniques than integral membrane proteins, whose extraction require phospholipid bilayer disruption by detergents. Here, important criteria for strategies of membrane protein purification are addressed, with a focus on the initial stages of membrane protein solublilization, where problems are most frequently are encountered. Protocols are outlined for the successful extraction of peripheral membrane proteins, solubilization of integral membrane proteins, and detergent removal which is important not only for retaining native protein stability and biological functions, but also for the efficiency of downstream purification techniques. Key Words: peripheral membrane protein, integral membrane protein, detergent, protein purification, protein solubilization. 1. Introduction Membrane proteins are associated with the membrane of a cell or particular organelle and are generally more problematic to purify than water-soluble proteins. Membrane proteins represent approximately 30 % of the open-reading frames of an organism’s genome (1-4), and play crucial roles in basic cell functions including signal transduction, energy production, nutrient uptake and cell-cell communication. -
A Lipid Pathway for Heat Adaptation
SCIENCE CHINA Life Sciences • RESEARCH HIGHLIGHT • July 2015 Vol.58 No.7: 727–728 doi: 10.1007/s11427-015-4880-x A lipid pathway for heat adaptation HUANG Xun State Key Laboratory of Molecular and Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sci- ences, Beijing 100101, China Received May 25, 2015; accepted May 28, 2015; published online June 4, 2015 Citation: Huang X. A lipid pathway for heat adaptation. Sci China Life Sci, 2015, 58: 727–728, doi: 10.1007/s11427-015-4880-x The emergence of cell membrane is an essential step in the drogenase acdh-11 with elevated fat-7 reporter expression origin of life on earth. Cell membrane, a matrix with fatty were recovered. Consistent with the role of fat-7 in lipid acid derived lipids and proteins, separates the outside envi- desaturation, membrane fluidity is increased and the level of ronment from enclosed cell internal. The composition of stearic acid, the most abundant saturated fatty acid, is re- membrane lipids largely determines biophysical properties duced in acdh-11 mutants. Importantly, acdh-11 mutants of cell membrane, such as fluidity, permeability and de- fail to adapt to heat: mutant embryos can develop to adult- formability, which are essential for cellular processes. hood at 15oC or 20oC, but not at 25oC. Is acdh-11 a regula- Temperature is an important environmental factor. Dif- tory component of HVA? One key feature of the regulatory ferent species live in a dramatic variation of temperature component is heat responsiveness. Indeed, it was found that conditions; for example, bacterial Thermus Aquaticus (in heat up-regulates acdh-11 expression. -
Biological Membranes
14 Biological Membranes To understand the structure The fundamental unit of life is the cell. All living things are composed of Goal and composition of biological cells, be it a single cell in the case of many microorganisms or a highly membranes. organized ensemble of myriad cell types in the case of multicellular organisms. A defining feature of the cell is a membrane, the cytoplasmic Objectives membrane, that surrounds the cell and separates the inside of the cell, the After this chapter, you should be able to cytoplasm, from other cells and the extracellular milieu. Membranes also • distinguish between cis and trans surround specialized compartments inside of cells known as organelles. unsaturated fatty acids. Whereas cells are typically several microns (μm) in diameter (although • explain why phospholipids some cells can be much larger), the membrane is only about 10 nanometers spontaneously form lipid bilayers and (nm) thick. Yet, and as we will see in subsequent chapters, the membrane is sealed compartments. not simply an ultra-thin, pliable sheet that encases the cytoplasm. Rather, • describe membrane fluidity and how it membranes are dynamic structures that mediate many functions in the is affected by membrane composition life of the cell. In this chapter we examine the composition of membranes, and temperature. their assembly, the forces that stabilize them, and the chemical and physical • explain the role of cholesterol in properties that influence their function. buffering membrane fluidity. The preceding chapters have focused on two kinds of biological molecules, • explain how the polar backbone namely proteins and nucleic acids, that are important in the workings of a membrane protein can be accommodated in a bilayer. -
The Lipid Bilayer: Composition and Structural Organization
THE LIPID BILAYER: COMPOSITION AND STRUCTURAL ORGANIZATION • MR. SOURAV BARAI • ASSISTANT PROFESSOR • DEPARTMENT OF ZOOLOGY • JHARGRAM RAJ COLLEGE THELIPID BILAYER: COMPOSITION AND STRUCTURAL ORGANIZATION The Fluid Mosaic Model of Biomembrane Plasma membrane • 1. Affect shape and function • 2. Anchor protein to the membrane • 3. Modify membrane protein activities • 4. Transducing signals to the cytoplasm “A living cell is a self-reproducing system of molecules held inside a container - the plasma membrane” Membrane comprised of lipid sheet (5 nm thick) • Primary purpose - barrier to prevent cell contents spilling out BUT, must be selective barrier Lipid Composition and struCturaL organization • Phospholipids of the composition present in cells spontaneously form sheet like phospholipid bilayers, which are two molecules thick. • The hydrocarbon chains of the phospholipids in each layer, or leaflet, form a hydrophobic core that is 3–4 nm thick in most biomembranes. • Approx 10^6 lipid molecule in 1µm×1µm area of lipid bilayer. • Electron microscopy of thin membrane sections stained with osmium tetroxide, which binds strongly to the polar head groups of phospholipids, reveals the bilayer structure. • A cross section of all single membranes stained with osmium tetroxide looks like a railroad track: two thin dark lines (the stain–head group complexes) with a uniform light space of about 2nm (the hydrophobic tails) between them. PROPERTIES • PERMIABILITY: The hydrophobic core is an impermeable barrier that prevents the diffusion of water-soluble (hydrophilic) solutes across the membrane. • STABILITY: The bilayer structure is maintained by hydrophobic and van der Waals interactions between the lipid chains. Even though the exterior aqueous environment can vary widely in ionic strength and pH, the bilayer has the strength to retain its characteristic architecture. -
Structure and Activity of Lipid Bilayer Within a Membrane-Protein Transporter
Structure and activity of lipid bilayer within a membrane-protein transporter Weihua Qiua,b,1, Ziao Fuc,1, Guoyan G. Xua, Robert A. Grassuccid, Yan Zhanga, Joachim Frankd,e,2, Wayne A. Hendricksond,f,g,2, and Youzhong Guoa,b,2 aDepartment of Medicinal Chemistry, Virginia Commonwealth University, Richmond, VA 23298; bInstitute for Structural Biology, Drug Discovery and Development, Virginia Commonwealth University, Richmond, VA 23219; cIntegrated Program in Cellular, Molecular, and Biomedical Studies, Columbia University, New York, NY 10032; dDepartment of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032; eDepartment of Biological Sciences, Columbia University, New York, NY 10027; fDepartment of Physiology and Cellular Biophysics, Columbia University, New York, NY 10032; and gNew York Structural Biology Center, New York, NY 10027 Contributed by Wayne A. Hendrickson, October 15, 2018 (sent for review July 20, 2018; reviewed by Yifan Cheng and Michael C. Wiener) Membrane proteins function in native cell membranes, but extrac- 1.9 Å (30). Nevertheless, the mechanism of active transport is still tion into isolated particles is needed for many biochemical and far from clear, in part because crucial structural information re- structural analyses. Commonly used detergent-extraction meth- garding protein–lipid interaction is missing (31). The AcrB trimer ods destroy naturally associated lipid bilayers. Here, we devised a has a central cavity between transmembrane (TM) domains of the detergent-free method for preparing cell-membrane nanopar- three protomers, where a portion of lipid bilayer may exist (26). ticles to study the multidrug exporter AcrB, by cryo-EM at 3.2-Å Although detergent molecules and some alkane chains have been resolution. -
A Molecular Phylogeny of the Sparidae (Perciformes: Percoidei)
W&M ScholarWorks Dissertations, Theses, and Masters Projects Theses, Dissertations, & Master Projects 2000 A molecular phylogeny of the Sparidae (Perciformes: Percoidei) Thomas M. Orrell College of William and Mary - Virginia Institute of Marine Science Follow this and additional works at: https://scholarworks.wm.edu/etd Part of the Genetics Commons, and the Zoology Commons Recommended Citation Orrell, Thomas M., "A molecular phylogeny of the Sparidae (Perciformes: Percoidei)" (2000). Dissertations, Theses, and Masters Projects. Paper 1539616799. https://dx.doi.org/doi:10.25773/v5-x8gj-1114 This Dissertation is brought to you for free and open access by the Theses, Dissertations, & Master Projects at W&M ScholarWorks. It has been accepted for inclusion in Dissertations, Theses, and Masters Projects by an authorized administrator of W&M ScholarWorks. For more information, please contact [email protected]. INFORMATION TO USERS This manuscript has been reproduced from the microfilm master. UMI films the text directly from (he original or copy submitted. Thus, some thesis and dissertation copies are in typewriter face, while others may be from any type of computer printer. The quality of this reproduction is dependent upon the quality of the copy submitted. Broken or indistinct print, colored or poor quality illustrations and photographs, print bieedthrough, substandard margins, and improper alignment can adversely affect reproduction. In the unlikely event that the author did not send UMI a complete manuscript and there are missing pages, these will be noted. Also, if unauthorized copyright material had to be removed, a note will indicate the deletion. Oversize materials (e.g., maps, drawings, charts) are reproduced by sectioning the original, beginning at the upper left-hand comer and continuing from left to right in equal sections with small overlaps.