Abnormal Copper Homeostasis: Mechanisms and Roles in Neurodegeneration
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Iron Transport Proteins: Gateways of Cellular and Systemic Iron Homeostasis
Iron transport proteins: Gateways of cellular and systemic iron homeostasis Mitchell D. Knutson, PhD University of Florida Essential Vocabulary Fe Heme Membrane Transport DMT1 FLVCR Ferroportin HRG1 Mitoferrin Nramp1 ZIP14 Serum Transport Transferrin Transferrin receptor 1 Cytosolic Transport PCBP1, PCBP2 Timeline of identification in mammalian iron transport Year Protein Original Publications 1947 Transferrin Laurell and Ingelman, Acta Chem Scand 1959 Transferrin receptor 1 Jandl et al., J Clin Invest 1997 DMT1 Gunshin et al., Nature; Fleming et al. Nature Genet. 1999 Nramp1 Barton et al., J Leukocyt Biol 2000 Ferroportin Donovan et al., Nature; McKie et al., Cell; Abboud et al. J. Biol Chem 2004 FLVCR Quigley et al., Cell 2006 Mitoferrin Shaw et al., Nature 2006 ZIP14 Liuzzi et al., Proc Natl Acad Sci USA 2008 PCBP1, PCBP2 Shi et al., Science 2013 HRG1 White et al., Cell Metab DMT1 (SLC11A2) • Divalent metal-ion transporter-1 • Former names: Nramp2, DCT1 Fleming et al. Nat Genet, 1997; Gunshin et al., Nature 1997 • Mediates uptake of Fe2+, Mn2+, Cd2+ • H+ coupled transporter (cotransporter, symporter) • Main roles: • intestinal iron absorption Illing et al. JBC, 2012 • iron assimilation by erythroid cells DMT1 (SLC11A2) Yanatori et al. BMC Cell Biology 2010 • 4 different isoforms: 557 – 590 a.a. (hDMT1) Hubert & Hentze, PNAS, 2002 • Function similarly in iron transport • Differ in tissue/subcellular distribution and regulation • Regulated by iron: transcriptionally (via HIF2α) post-transcriptionally (via IRE) IRE = Iron-Responsive Element Enterocyte Lumen DMT1 Fe2+ Fe2+ Portal blood Enterocyte Lumen DMT1 Fe2+ Fe2+ Fe2+ Fe2+ Ferroportin Portal blood Ferroportin (SLC40A1) • Only known mammalian iron exporter Donovan et al., Nature 2000; McKie et al., Cell 2000; Abboud et al. -
Ferroportin Mutation in Autosomal Dominant Hemochromatosis: Loss of Function, Gain in Understanding
Ferroportin mutation in autosomal dominant hemochromatosis: loss of function, gain in understanding Robert E. Fleming, William S. Sly J Clin Invest. 2001;108(4):521-522. https://doi.org/10.1172/JCI13739. Commentary Normal iron homeostasis requires close matching of dietary iron absorption with body iron needs (1). Hereditary hemochromatosis (HH), a common abnormality of iron metabolism, is characterized by excess absorption of dietary iron despite elevated stores, and secondary damage to the liver, pancreas, and other organs (2). Classic HH is caused by mutation of the HFE gene and is inherited as an autosomal recessive trait. However, a substantial percentage of individuals with hemochromatosis, especially in non–Northern European populations, have no mutations in HFE (3). Many such cases differ from classic HH in the relative distribution of iron between the plasma, hepatocytes, and reticuloendothelial (RE) cells (4). Pietrangelo et al. recently reported a pedigree with atypical hemochromatosis inherited as an autosomal dominant trait (5). In this issue of the JCI, Montosi et al. report the surprising finding that the gene mutated in these patients (SLC11A3) encodes the iron export protein ferroportin1 (also known as IREG1, or MTP1) (6). They conclude that the identified mutation (A77D) probably results in loss of ferroportin1 function, suggesting that the affected individuals are haploinsufficient for this gene product. In a nearly simultaneous report, Njajou et al. (7) describe a similar pedigree with autosomal dominant hemochromatosis and a different missense mutation (N144H) in the same gene. Njajou et al., however, conclude that the iron overload phenotype was likely […] Find the latest version: https://jci.me/13739/pdf Ferroportin mutation in autosomal Commentary dominant hemochromatosis: loss See related article, pages 619–623. -
A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated. -
Timing of Antioxidant Gene Therapy: Implications for Treating Dry AMD
Biochemistry and Molecular Biology Timing of Antioxidant Gene Therapy: Implications for Treating Dry AMD Manas R. Biswal,1 Pingyang Han,1 Ping Zhu,2 Zhaoyang Wang,3 Hong Li,1 Cristhian J. Ildefonso,2 and Alfred S. Lewin1 1Department of Molecular Genetics and Microbiology, University of Florida College of Medicine, Gainesville, Florida, United States 2Department of Ophthalmology, University of Florida College of Medicine, Gainesville, Florida, United States 3Department of Ophthalmology, Shanghai Ninth People’s Hospital, Shanghai Jiaotong University School of Medicine, Huangpu District, Shanghai, China Correspondence: Manas R. Biswal, PURPOSE. To investigate whether antioxidant gene therapy protects the structure and function Department of Molecular Genetics of retina in a murine model of RPE atrophy, and to determine whether antioxidant gene and Microbiology, University of Flor- therapy can prevent degeneration once it has begun. ida College of Medicine, 1200 New- ell Drive, Gainesville, FL 32610, USA; METHODS. We induced mitochondrial oxidative stress in RPE by conditional deletion of Sod2, Biswal@ufl.edu. the gene for manganese superoxide dismutase (MnSOD). These mice exhibited localized Submitted: December 9, 2016 atrophy of the RPE and overlying photoreceptors. We restored Sod2 to the RPE of one eye Accepted: January 23, 2017 using adeno-associated virus (AAV) by subretinal injection at an early (6 weeks) and a late Citation: Biswal MR, Han P, Zhu P, et stage (6 months), injecting the other eye with an AAV vector expressing green fluorescent al. Timing of antioxidant gene thera- protein (GFP). Retinal degeneration was monitored over a period of 9 months by py: implications for treating dry AMD. electroretinography (ERG) and spectral-domain optical coherence tomography (SD-OCT). -
Calcium-Dependent Copper Redistributions in Neuronal Cells Revealed by a Fluorescent Copper Sensor and X-Ray Fluorescence Microscopy
Calcium-dependent copper redistributions in neuronal cells revealed by a fluorescent copper sensor and X-ray fluorescence microscopy Sheel C. Dodania,1, Dylan W. Domaillea,1, Christine I. Nama,b,1, Evan W. Millera, Lydia A. Finneyc, Stefan Vogtc, and Christopher J. Changa,b,2 aDepartment of Chemistry, University of California, Berkeley, CA 94720; bHoward Hughes Medical Institute, University of California, Berkeley, CA 94720; and cX-Ray Sciences Division and Biosciences Division, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, IL 60439 Edited* by Harry B. Gray, California Institute of Technology, Pasadena, CA, and approved February 23, 2011 (received for review July 9, 2010) Dynamic fluxes of s-block metals like potassium, sodium, and Along these lines, molecular imaging with copper-responsive calcium are of broad importance in cell signaling. In contrast, the fluorescent sensors offers a potentially powerful methodology concept of mobile transition metals triggered by cell activation for interrogating its cell biology by allowing the specific tracking remains insufficiently explored, in large part because metals like of copper pools in living cells with spatial and temporal resolution copper and iron are typically studied as static cellular nutrients and (12, 26–32). In this regard, analogous tools have revolutionized there are a lack of direct, selective methods for monitoring their the study of calcium in a variety of biological settings (1) and hold distributions in living cells. To help meet this need, we now report promise for interrogating other cellular metals (26). However, Coppersensor-3 (CS3), a bright small-molecule fluorescent probe fluorescence-based sensing of Cuþ, the oxidation state stabilized that offers the unique capability to image labile copper pools in in reducing cytosolic environments, presents several additional living cells at endogenous, basal levels. -
Current Biomedical Use of Copper Chelation Therapy
International Journal of Molecular Sciences Review Current Biomedical Use of Copper Chelation Therapy Silvia Baldari 1,2, Giuliana Di Rocco 1 and Gabriele Toietta 1,* 1 Department of Research, Advanced Diagnostic, and Technological Innovation, IRCCS Regina Elena National Cancer Institute, via E. Chianesi 53, 00144 Rome, Italy; [email protected] (S.B.); [email protected] (G.D.R.) 2 Department of Medical Surgical Sciences and Biotechnologies, University of Rome “La Sapienza”, C.so della Repubblica 79, 04100 Latina, Italy * Correspondence: [email protected]; Tel.: +39-06-5266-2604 Received: 9 January 2020; Accepted: 4 February 2020; Published: 6 February 2020 Abstract: Copper is an essential microelement that plays an important role in a wide variety of biological processes. Copper concentration has to be finely regulated, as any imbalance in its homeostasis can induce abnormalities. In particular, excess copper plays an important role in the etiopathogenesis of the genetic disease Wilson’s syndrome, in neurological and neurodegenerative pathologies such as Alzheimer’s and Parkinson’s diseases, in idiopathic pulmonary fibrosis, in diabetes, and in several forms of cancer. Copper chelating agents are among the most promising tools to keep copper concentration at physiological levels. In this review, we focus on the most relevant compounds experimentally and clinically evaluated for their ability to counteract copper homeostasis deregulation. In particular, we provide a general overview of the main disorders characterized by a pathological increase in copper levels, summarizing the principal copper chelating therapies adopted in clinical trials. Keywords: copper; chelation therapy; therapeutic chelation; metal homeostasis; cancer; metalloproteins 1. -
Supplementary Table S4. FGA Co-Expressed Gene List in LUAD
Supplementary Table S4. FGA co-expressed gene list in LUAD tumors Symbol R Locus Description FGG 0.919 4q28 fibrinogen gamma chain FGL1 0.635 8p22 fibrinogen-like 1 SLC7A2 0.536 8p22 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 DUSP4 0.521 8p12-p11 dual specificity phosphatase 4 HAL 0.51 12q22-q24.1histidine ammonia-lyase PDE4D 0.499 5q12 phosphodiesterase 4D, cAMP-specific FURIN 0.497 15q26.1 furin (paired basic amino acid cleaving enzyme) CPS1 0.49 2q35 carbamoyl-phosphate synthase 1, mitochondrial TESC 0.478 12q24.22 tescalcin INHA 0.465 2q35 inhibin, alpha S100P 0.461 4p16 S100 calcium binding protein P VPS37A 0.447 8p22 vacuolar protein sorting 37 homolog A (S. cerevisiae) SLC16A14 0.447 2q36.3 solute carrier family 16, member 14 PPARGC1A 0.443 4p15.1 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha SIK1 0.435 21q22.3 salt-inducible kinase 1 IRS2 0.434 13q34 insulin receptor substrate 2 RND1 0.433 12q12 Rho family GTPase 1 HGD 0.433 3q13.33 homogentisate 1,2-dioxygenase PTP4A1 0.432 6q12 protein tyrosine phosphatase type IVA, member 1 C8orf4 0.428 8p11.2 chromosome 8 open reading frame 4 DDC 0.427 7p12.2 dopa decarboxylase (aromatic L-amino acid decarboxylase) TACC2 0.427 10q26 transforming, acidic coiled-coil containing protein 2 MUC13 0.422 3q21.2 mucin 13, cell surface associated C5 0.412 9q33-q34 complement component 5 NR4A2 0.412 2q22-q23 nuclear receptor subfamily 4, group A, member 2 EYS 0.411 6q12 eyes shut homolog (Drosophila) GPX2 0.406 14q24.1 glutathione peroxidase -
Ncomms4301.Pdf
ARTICLE Received 8 Jul 2013 | Accepted 23 Jan 2014 | Published 13 Feb 2014 DOI: 10.1038/ncomms4301 Genome-wide RNAi ionomics screen reveals new genes and regulation of human trace element metabolism Mikalai Malinouski1,2, Nesrin M. Hasan3, Yan Zhang1,4, Javier Seravalli2, Jie Lin4,5, Andrei Avanesov1, Svetlana Lutsenko3 & Vadim N. Gladyshev1 Trace elements are essential for human metabolism and dysregulation of their homoeostasis is associated with numerous disorders. Here we characterize mechanisms that regulate trace elements in human cells by designing and performing a genome-wide high-throughput siRNA/ionomics screen, and examining top hits in cellular and biochemical assays. The screen reveals high stability of the ionomes, especially the zinc ionome, and yields known regulators and novel candidates. We further uncover fundamental differences in the regulation of different trace elements. Specifically, selenium levels are controlled through the selenocysteine machinery and expression of abundant selenoproteins; copper balance is affected by lipid metabolism and requires machinery involved in protein trafficking and post-translational modifications; and the iron levels are influenced by iron import and expression of the iron/haeme-containing enzymes. Our approach can be applied to a variety of disease models and/or nutritional conditions, and the generated data set opens new directions for studies of human trace element metabolism. 1 Genetics Division, Department of Medicine, Brigham and Women’s Hospital and Harvard Medical School, Boston, Massachusetts 02115, USA. 2 Department of Biochemistry, University of Nebraska-Lincoln, Lincoln, Nebraska 68588, USA. 3 Department of Physiology, Johns Hopkins University, Baltimore, Maryland 21205, USA. 4 Key Laboratory of Nutrition and Metabolism, Institute for Nutritional Sciences, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai 200031, China. -
Identification of Potential Key Genes and Pathway Linked with Sporadic Creutzfeldt-Jakob Disease Based on Integrated Bioinformatics Analyses
medRxiv preprint doi: https://doi.org/10.1101/2020.12.21.20248688; this version posted December 24, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted medRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission. Identification of potential key genes and pathway linked with sporadic Creutzfeldt-Jakob disease based on integrated bioinformatics analyses Basavaraj Vastrad1, Chanabasayya Vastrad*2 , Iranna Kotturshetti 1. Department of Biochemistry, Basaveshwar College of Pharmacy, Gadag, Karnataka 582103, India. 2. Biostatistics and Bioinformatics, Chanabasava Nilaya, Bharthinagar, Dharwad 580001, Karanataka, India. 3. Department of Ayurveda, Rajiv Gandhi Education Society`s Ayurvedic Medical College, Ron, Karnataka 562209, India. * Chanabasayya Vastrad [email protected] Ph: +919480073398 Chanabasava Nilaya, Bharthinagar, Dharwad 580001 , Karanataka, India NOTE: This preprint reports new research that has not been certified by peer review and should not be used to guide clinical practice. medRxiv preprint doi: https://doi.org/10.1101/2020.12.21.20248688; this version posted December 24, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted medRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission. Abstract Sporadic Creutzfeldt-Jakob disease (sCJD) is neurodegenerative disease also called prion disease linked with poor prognosis. The aim of the current study was to illuminate the underlying molecular mechanisms of sCJD. The mRNA microarray dataset GSE124571 was downloaded from the Gene Expression Omnibus database. Differentially expressed genes (DEGs) were screened. -
Essential Trace Elements in Human Health: a Physician's View
Margarita G. Skalnaya, Anatoly V. Skalny ESSENTIAL TRACE ELEMENTS IN HUMAN HEALTH: A PHYSICIAN'S VIEW Reviewers: Philippe Collery, M.D., Ph.D. Ivan V. Radysh, M.D., Ph.D., D.Sc. Tomsk Publishing House of Tomsk State University 2018 2 Essential trace elements in human health UDK 612:577.1 LBC 52.57 S66 Skalnaya Margarita G., Skalny Anatoly V. S66 Essential trace elements in human health: a physician's view. – Tomsk : Publishing House of Tomsk State University, 2018. – 224 p. ISBN 978-5-94621-683-8 Disturbances in trace element homeostasis may result in the development of pathologic states and diseases. The most characteristic patterns of a modern human being are deficiency of essential and excess of toxic trace elements. Such a deficiency frequently occurs due to insufficient trace element content in diets or increased requirements of an organism. All these changes of trace element homeostasis form an individual trace element portrait of a person. Consequently, impaired balance of every trace element should be analyzed in the view of other patterns of trace element portrait. Only personalized approach to diagnosis can meet these requirements and result in successful treatment. Effective management and timely diagnosis of trace element deficiency and toxicity may occur only in the case of adequate assessment of trace element status of every individual based on recent data on trace element metabolism. Therefore, the most recent basic data on participation of essential trace elements in physiological processes, metabolism, routes and volumes of entering to the body, relation to various diseases, medical applications with a special focus on iron (Fe), copper (Cu), manganese (Mn), zinc (Zn), selenium (Se), iodine (I), cobalt (Co), chromium, and molybdenum (Mo) are reviewed. -
Review on Parkinson's Disease, a Neurodegenerative Disorder And
ISSN: 2349-8889 International Journal for Research in Applied Sciences and Biotechnology Volume-8, Issue-4 (July 2021) www.ijrasb.com https://doi.org/10.31033/ijrasb.8.4.11 Review on Parkinson’s Disease, a Neurodegenerative Disorder and The Role of Ceruloplasmin Protein in It Ajay Chaudhary1, Noopur Khare2, Yamini Dixit3 and Abhimanyu Kumar Jha4 1Department of Biotechnology, Faculty of Life Sciences, Institute of Applied Medicines and Research, Ghaziabad, Uttar Pradesh, INDIA 2Shri Ramswaroop Memorial University, Barbanki, Uttar Pradesh, INDIA 3Department of Biotechnology, Faculty of Life Sciences, Institute of Applied Medicines and Research, Ghaziabad, Uttar Pradesh, INDIA 4Department of Biotechnology, Faculty of Life Sciences, Institute of Applied Medicines and Research, Ghaziabad, Uttar Pradesh, INDIA 3Corresponding Author: [email protected] ABSTRACT neurodegenerative disease [Gitler et al., 2017]. Increasing Parkinson’s disease (PD), a neurodegenerative Age is the one of the most common risk factor associated disease is becoming major health concern mainly for elder with neurodegenerative disease, especially in case of people of age over 60 years. The main cause of PD is Alzheimer’s and Parkinson’s disease [Przedborski et al., permanent loss/death of dopaminergic nerve cells present in 2003]. In this study, main focus will be the cause of PD brain part called substantia nigra, which is responsible for and ceruloplasmin role in it. dopamine synthesis. MAO-B, monoamine oxidase B, regulates dopamine metabolism and increased activity of Parkinson’s disease MAO-B causes dopamine degradation which in turn Parkinson’s disease (PD) is the second most promotes the accumulation of glutamate and oxidative stress occurring disease after Alzheimer’s disease in elder with free radical liberation. -
Biddau, M. and Sheiner, L. (2019) Targeting the Apicoplast in Malaria. Biochemical Society Transactions, 47(4), Pp. 973-983. (Doi: 10.1042/BST20170563)
\ Biddau, M. and Sheiner, L. (2019) Targeting the apicoplast in malaria. Biochemical Society Transactions, 47(4), pp. 973-983. (doi: 10.1042/BST20170563) The material cannot be used for any other purpose without further permission of the publisher and is for private use only. There may be differences between this version and the published version. You are advised to consult the publisher’s version if you wish to cite from it. http://eprints.gla.ac.uk/191922/ Deposited on 07 August 2019 Enlighten – Research publications by members of the University of Glasgow http://eprints.gla.ac.uk 1 Targeting the apicoplast in malaria 2 3 Marco Biddau1* and Lilach Sheiner1* 4 5 1 Wellcome Centre for Integrative Parasitology, University of Glasgow, 120 University Place 6 Glasgow, United Kingdom. 7 8 *corresponding authors: [email protected]; [email protected] 9 10 Abbreviations aaRS aminoacyl-tRNA synthetase ABCF1 ATP-binding cassette protein F1 ACT Artemisinin-based combination therapy ATG Autophagy-related protein ATrxs Apicoplast thioredoxins Clp Caseinolytic protease DMT2 Divalent metal transporter 2 EF-G Elongator factor G EF-Tu Elongator factor thermo unstable FASII Fatty acid synthesis type II GGPP Geranylgeranyl pyrophosphate IPP Isopentenyl pyrophosphate ISC Iron-Sulfur cluster biosynthesis MMV Medicines for Malaria Venture 11 12 Abstract 13 Malaria continues to be one of the leading causes of human mortality in the world, and 14 the therapies available are insufficient for eradication. Malaria is caused by the 15 apicomplexan parasite Plasmodium. Apicomplexan parasites, including the 16 Plasmodium spp., are descendants of photosynthetic algae, and therefore they possess 17 an essential plastid organelle, named the apicoplast.