Chicken Heat Shock Protein 70 Is an Essential Host Protein for Infectious Bursal Disease Virus Infection in Vitro

Total Page:16

File Type:pdf, Size:1020Kb

Chicken Heat Shock Protein 70 Is an Essential Host Protein for Infectious Bursal Disease Virus Infection in Vitro pathogens Article Chicken Heat Shock Protein 70 Is an Essential Host Protein for Infectious Bursal Disease Virus Infection In Vitro Yufang Meng, Xiaoxue Yu *, Chunxue You , Wenjuan Zhang , Yingfeng Sun, Liuan Li, Tianming Jin, Pengyu Pan and Ailing Xie Tianjin Key Laboratory of Agricultural Animal Breeding and Healthy Husbandry, College of Animal Science and Veterinary Medicine, Tianjin Agricultural University, Tianjin 300392, China; [email protected] (Y.M.); [email protected] (C.Y.); [email protected] (W.Z.); [email protected] (Y.S.); [email protected] (L.L.); [email protected] (T.J.); [email protected] (P.P.); [email protected] (A.X.) * Correspondence: [email protected]; Tel.: +86-022-23781297 Abstract: Infectious bursal disease virus (IBDV) infection causes pathogenicity and mortality in chickens, leading to huge economic losses in the poultry industry worldwide. Studies of host- virus interaction can help us to better understand the viral pathogenicity. As a highly conservative host factor, heat shock protein 70 (Hsp70) is observed to be involved in numerous viral infections. However, there is little information about the role of chicken Hsp70 (cHsp70) in IBDV infection. In the present study, the increased expression of cHsp70 was observed during IBDV-infected DF-1 cells. Further studies revealed that Hsp70 had similar locations with the viral double-stranded RNA (dsRNA), and the result of pull-down assay showed the direct interaction between cHsp70 with dsRNA, viral proteins (vp)2 and 3, indicating that maybe cHsp70 participates in the formation of the replication and transcription complex. Furthermore, overexpression of cHsp70 promoted IBDV Citation: Meng, Y.; Yu, X.; You, C.; production and knockdown of cHsp70 using small interfering RNAs (siRNA) and reducedviral Zhang, W.; Sun, Y.; Li, L.; Jin, T.; Pan, P.; Xie, A. Chicken Heat Shock Protein production, implying the necessity of cHsp70 in IBDV infection. These results reveal that cHsp70 70 Is an Essential Host Protein for is essential for IBDV infection in DF-1 cells, suggesting that targeting cHsp70 may be applied as an Infectious Bursal Disease Virus antiviral strategy. Infection In Vitro. Pathogens 2021, 10, 664. https://doi.org/10.3390/ Keywords: IBDV; Hsp70; dsRNA; replication; host-virus interaction pathogens10060664 Academic Editor: Anna Honko 1. Introduction Received: 12 April 2021 Infectious bursal disease (IBD), caused by infectious bursal disease virus (IBDV), is Accepted: 26 May 2021 a very acute and highly contagious disease which leads to great loss in poultry. IBDV is Published: 28 May 2021 a double-stranded RNA virus which belongs to family Birnaviridae [1]. There are two serotypes of IBDV. Serotype 1 strains can cause pathogenicity and mortality in chickens Publisher’s Note: MDPI stays neutral and serotype 2 strains are avirulent to chickens [2–4]. IBDV targets chicken B lymphocytes with regard to jurisdictional claims in primarily, disrupts the function of the bursa of Fabricius, leads to immunosuppression published maps and institutional affil- and makes chickens susceptible to other pathogens. Serotype 1 strains of IBDV are widely iations. propagated in chicken embryo fibroblast cells, such as DF-1 cells and chicken embryo fibroblasts (CEF) [5]. The IBDV genome consists of two segments, segment A encoding vp2, 3, 4, 5 and segment B encoding vp1 [6]. vp2 and vp3 are structural proteins of IBDV particles, and the binding between vp2 or vp3 with dsRNA is very important to maintain Copyright: © 2021 by the authors. the stability of virions [7]. As parasitic organisms, many processes in the viral propagation Licensee MDPI, Basel, Switzerland. rely on host factors to facilitate, such as adsorption, stripping, genome replication and This article is an open access article transcription, viral protein synthesis, virus particle packaging and so on [8–12]. Meanwhile, distributed under the terms and the defense mechanisms of the host cells are activated to combat the viral infection, such conditions of the Creative Commons Attribution (CC BY) license (https:// as the innate immune response [13]. Hence, host factors may play positive or negative creativecommons.org/licenses/by/ roles during viral infection. Thus, study of virus–host protein interactions is critical for 4.0/). understanding viral pathogenesis and development of antiviral drugs. Pathogens 2021, 10, 664. https://doi.org/10.3390/pathogens10060664 https://www.mdpi.com/journal/pathogens Pathogens 2021, 10, 664 2 of 11 such as the innate immune response [13]. Hence, host factors may play positive or nega- Pathogens 2021, 10, 664 tive roles during viral infection. Thus, study of virus–host protein interactions is critical2 of 11 for understanding viral pathogenesis and development of antiviral drugs. Heat shock proteins (Hsps) are evolutionarily conserved proteins. The expression of Hsps,Heat including shock proteinsHsp70, increase (Hsps)s are following evolutionarily stress exposure, conserved such proteins. as heat Theshock expression and path- ofogenic Hsps, infection. including Hsp70 Hsp70, is found increases highly following expressed stress in many exposure, virus infections such as heat and shockis involved and pathogenicin virus entry, infection. replication Hsp70 of the is found virus genome, highly expressed modulating in manyvirus polymerase virus infections activity and [14] is , involvedpackaging in of virus virions, entry, and replication innate immune of the virus response genome, of host modulating [15]. Inhibition virus polymeraseof Hsp70 re- activityduces the [14 ],replication packaging and of virions, production and innate of reproduct immuneive response and respiratory of host [15 syndrome]. Inhibition virus of Hsp70(PPRSV) reduces [16], inhibit the replications the EB andvirus production infection [17] of reproductive, decreases the and virus respiratory titer of syndromeZika virus virus[18,19] (PPRSV) and affect [16s], the inhibits assembly the EB of virushepatitis infection C virions [17], [20] decreases. Previous the studies virus titershowed of Zika that viruschicken [18 ,Hsp9019] and which affects belongs the assembly to the H ofsp hepatitis family of C virionsproteins [20 is]. involved Previous in studies IBDV infection. showed thatcHsp90 chicken participates Hsp90 whichin IBDV belongs entry into to theDF- Hsp1 cells family through of proteinsinteraction is with involved subviral in IBDV parti- infection.cles which cHsp90 are formed participates from vp2 in [ IBDV10]. Appl entryication into DF-1of anti cells-cHsp90 through micro interactionRNAs could with in- subviralhibit IBDV particles infection which and are furthermo formed fromre cHsp90 vp2 [10α,]. not Application cHsp90β, offunctions anti-cHsp90 in IBDV microRNAs infection could[21]. Heat inhibit conditioning IBDV infection cause ands increased furthermore Hsp70 cHsp90 expressionα, not and cHsp90 a decreasedβ, functions bursal in IBDV histo- infectionlogical score [21]. Heatduring conditioning IBDV infection causes [22 increased]. A DNA Hsp70 vaccine expression developed and ausing decreased a full bursallength histologicalvp2 gene of score IBDV during fused IBDVwith truncated infection [Hsp7022]. A DNAof Mycobacterium vaccine developed tuberculosis using could a full provide length vp2very gene good of protection IBDV fused against with truncatedIBDV [23] Hsp70. Heat shock of Mycobacterium cognate protein tuberculosis 70 (HSC70),could a providemember veryof the good Hsp70 protection family, against is required IBDV for [23 IBDV]. Heat infection shock cognate by interacting protein 70with (HSC70), vp2 [24 a]. member Results offrom the Hsp70previous family, studies is requiredindicate forthat IBDV Hsp70 infection should bybe interactinginvolved in with IBDV vp2 infection. [24]. Results How- fromever, previous the exact studies roles of indicate Hsp70 thatin IBDV Hsp70 infection should have be involved not been in evaluated. IBDV infection. However, the exactIn this roles resear of Hsp70ch, we in aimed IBDV infectionto reveal havewhether not beencHsp70 evaluated. is involved in IBDV infection. We Inobserved this research, that the we expression aimed to reveal of cHsp70 whether increased cHsp70 isin involved IBDV-infected in IBDV DF infection.-1 cells, Weand observedsiRNA interference that the expression targeting of cHsp70 cHsp70 lead increased to lower in production IBDV-infected of IBDV. DF-1 cells,Furthermore, and siRNA we interferenceobserved the targeting direct interaction cHsp70 lead of toHsp70 lower and production dsRNA of IBDV.IBDV. Furthermore,Overexpression we observedof cHsp70 thepromoted direct interaction viral production of Hsp70 and and siRNA dsRNA towards of IBDV. cHsp70 Overexpression weakened viral of cHsp70 production promoted. These viralresults production indicate that and chicken siRNA towardsHsp70 play cHsp70s a positive weakened role viralin DF production.-1 cells during These IBDV results infec- indicatetion. In thatthis chickenstudy, for Hsp70 the first plays time a positive the interaction role in DF-1 between cells duringhost protein IBDV- infection.Hsp70 and In IBDV this study,is revealed, for the which first time would the provide interaction a new between sight into host IBDV protein-Hsp70 pathogenesis. and IBDV is revealed, which would provide a new sight into IBDV pathogenesis. 2. Results 2. Results 2.1.2.1. ViralViral Load Load Changes Changes in in IBDV-Infected IBDV-Infected DF-1 DF-1 Cells Cells DF-1DF-1 cells cells are are susceptible
Recommended publications
  • Detection and Characterization of a Novel Marine Birnavirus Isolated from Asian Seabass in Singapore
    Chen et al. Virology Journal (2019) 16:71 https://doi.org/10.1186/s12985-019-1174-0 RESEARCH Open Access Detection and characterization of a novel marine birnavirus isolated from Asian seabass in Singapore Jing Chen1†, Xinyu Toh1†, Jasmine Ong1, Yahui Wang1, Xuan-Hui Teo1, Bernett Lee2, Pui-San Wong3, Denyse Khor1, Shin-Min Chong1, Diana Chee1, Alvin Wee1, Yifan Wang1, Mee-Keun Ng1, Boon-Huan Tan3 and Taoqi Huangfu1* Abstract Background: Lates calcarifer, known as seabass in Asia and barramundi in Australia, is a widely farmed species internationally and in Southeast Asia and any disease outbreak will have a great economic impact on the aquaculture industry. Through disease investigation of Asian seabass from a coastal fish farm in 2015 in Singapore, a novel birnavirus named Lates calcarifer Birnavirus (LCBV) was detected and we sought to isolate and characterize the virus through molecular and biochemical methods. Methods: In order to propagate the novel birnavirus LCBV, the virus was inoculated into the Bluegill Fry (BF-2) cell line and similar clinical signs of disease were reproduced in an experimental fish challenge study using the virus isolate. Virus morphology was visualized using transmission electron microscopy (TEM). Biochemical analysis using chloroform and 5-Bromo-2′-deoxyuridine (BUDR) sensitivity assays were employed to characterize the virus. Next-Generation Sequencing (NGS) was also used to obtain the virus genome for genetic and phylogenetic analyses. Results: The LCBV-infected BF-2 cell line showed cytopathic effects such as rounding and granulation of cells, localized cell death and detachment of cells observed at 3 to 5 days’ post-infection.
    [Show full text]
  • Aquatic Animal Viruses Mediated Immune Evasion in Their Host T ∗ Fei Ke, Qi-Ya Zhang
    Fish and Shellfish Immunology 86 (2019) 1096–1105 Contents lists available at ScienceDirect Fish and Shellfish Immunology journal homepage: www.elsevier.com/locate/fsi Aquatic animal viruses mediated immune evasion in their host T ∗ Fei Ke, Qi-Ya Zhang State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, China ARTICLE INFO ABSTRACT Keywords: Viruses are important and lethal pathogens that hamper aquatic animals. The result of the battle between host Aquatic animal virus and virus would determine the occurrence of diseases. The host will fight against virus infection with various Immune evasion responses such as innate immunity, adaptive immunity, apoptosis, and so on. On the other hand, the virus also Virus-host interactions develops numerous strategies such as immune evasion to antagonize host antiviral responses. Here, We review Virus targeted molecular and pathway the research advances on virus mediated immune evasions to host responses containing interferon response, NF- Host responses κB signaling, apoptosis, and adaptive response, which are executed by viral genes, proteins, and miRNAs from different aquatic animal viruses including Alloherpesviridae, Iridoviridae, Nimaviridae, Birnaviridae, Reoviridae, and Rhabdoviridae. Thus, it will facilitate the understanding of aquatic animal virus mediated immune evasion and potentially benefit the development of novel antiviral applications. 1. Introduction Various antiviral responses have been revealed [19–22]. How they are overcome by different viruses? Here, we select twenty three strains Aquatic viruses have been an essential part of the biosphere, and of aquatic animal viruses which represent great harms to aquatic ani- also a part of human and aquatic animal lives.
    [Show full text]
  • Origins and Evolution of the Global RNA Virome
    bioRxiv preprint doi: https://doi.org/10.1101/451740; this version posted October 24, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Origins and Evolution of the Global RNA Virome 2 Yuri I. Wolfa, Darius Kazlauskasb,c, Jaime Iranzoa, Adriana Lucía-Sanza,d, Jens H. 3 Kuhne, Mart Krupovicc, Valerian V. Doljaf,#, Eugene V. Koonina 4 aNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, USA 5 b Vilniaus universitetas biotechnologijos institutas, Vilnius, Lithuania 6 c Département de Microbiologie, Institut Pasteur, Paris, France 7 dCentro Nacional de Biotecnología, Madrid, Spain 8 eIntegrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious 9 Diseases, National Institutes of Health, Frederick, Maryland, USA 10 fDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, USA 11 12 #Address correspondence to Valerian V. Dolja, [email protected] 13 14 Running title: Global RNA Virome 15 16 KEYWORDS 17 virus evolution, RNA virome, RNA-dependent RNA polymerase, phylogenomics, horizontal 18 virus transfer, virus classification, virus taxonomy 1 bioRxiv preprint doi: https://doi.org/10.1101/451740; this version posted October 24, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 19 ABSTRACT 20 Viruses with RNA genomes dominate the eukaryotic virome, reaching enormous diversity in 21 animals and plants. The recent advances of metaviromics prompted us to perform a detailed 22 phylogenomic reconstruction of the evolution of the dramatically expanded global RNA virome.
    [Show full text]
  • Finfish Diseases
    SECTION 2 - FINFISH DISEASES Basic Anatomy of a Typical Bony Fish 48 SECTION 2 - FINFISH DISEASES F. 1 GENERAL TECHNIQUES 50 F.1.1 Gross Observations 50 F.1.1.1 Behaviour 50 F.1.1.2 Surface Observations 50 F.1.1.2.1 Skin and Fins 50 F.1.1.2.2 Gills 51 F.1.1.2.3 Body 52 F.1.1.3 Internal Observations 52 F.1.1.3.1 Body Cavity and Muscle 52 F.1.1.3.2 Organs 52 F.1.2 Environmental Parameters 53 F.1.3 General Procedures 53 F.1.3.1 Pre-Collection Preparation 53 F.1.3.2 Background Information 54 F.1.3.3 Sample Collection for Health Surveillance 54 F.1.3.4 Sample Collection for Disease Diagnosis 54 F.1.3.5 Live Specimen Collection for Shipping 55 F.1.3.6 Dead or Tissue Specimen Collection for Shipping 55 F.1.3.7 Preservation of Tissue Samples 56 F.1.3.8 Shipping Preserved Samples 56 F.1.4 Record-Keeping 57 F.1.4.1 Gross Observations 57 F.1.4.2 Environmental Observations 57 F.1.4.3 Stocking Records 57 F.1.5 References 57 VIRAL DISEASES OF FINFISH F.2 Epizootic Haematopoietic Necrosis (EHN) 59 F.3 Infectious Haematopoietic Necrosis (IHN) 62 F.4 Oncorhynchus masou Virus (OMV) 65 F.5 Infectious Pancreatic Necrosis (IPN) 68 F.6 Viral Encephalopathy and Retinopathy (VER) 72 F.7 Spring Viraemia of Carp (SVC) 76 F.8 Viral Haemorrhagic Septicaemia (VHS) 79 F.9 Lymphocystis 82 BACTERIAL DISEASE OF FINFISH F.10 Bacterial Kidney Disease (BKD) 86 FUNGUS ASSOCIATED DISEASE FINFISH F.11 Epizootic Ulcerative Syndrome (EUS) 90 ANNEXES F.AI OIE Reference Laboratories for Finfish Diseases 95 F.AII List of Regional Resource Experts for Finfish 98 Diseases in Asia-Pacific F.AIII List of Useful Diagnostic Manuals/Guides to 105 Finfish Diseases in Asia-Pacific 49 F.1 GENERAL TECHNIQUES infectious disease agent and should be sampled immediately.
    [Show full text]
  • Diseases of Wild and Cultured Shellfish in Alaska
    BIVALVE MOLLUSC VIRUSES Aquabirnavirus I. Causative Agent and Disease III. Clinical Signs Aquabirnavirus is a recent new Bivalve molluscs are generally genus in the virus family Birnaviridae. asymptomatic carriers and/or vectors of These unenveloped icosahedral (~60 these viruses. nm) viruses (over 200 isolates) contain a bi-segmented double stranded RNA IV. Transmission genome that encodes 5 proteins and Transmission is horizontal animal to have been isolated in cell culture from a animal via water. Isolates from bivalve variety of marine and freshwater fish and molluscs may also represent bioaccumu- shellfish species worldwide. There are lation from filter feeding after the virus three and possibly four serogroups (A, B, is shed into the water column from a C & D) comprising at least 16 serotypes nearby fish host. of aquabirnaviruses. Molecular testing has determined there are currently 7 V. Diagnosis genogroups. Several of these viruses oc- Detection of Aquabirnavirus is ac- curring in finfish cause disease (such as complished either by direct examination IPNV in salmonids) while those infect- of shellfish tissues with transmission ing molluscs are mostly apathogenic, al- electron microscopy (TEM) or by isolat- though some isolates have been reported ing the virus in cultures of susceptible to cause cell pathology or mortality in fish cell lines that have been inoculated stressed bivalves. Some of these viruses with contaminated or infected shellfish that are shed into the water column by tissue. Cytopathic effect (CPE) is gener- a fish host may be bioaccumulated by ally a nondescript diffuse thinning and nearby bivalve molluscs through the necrosis of infected cells. Identification filter feeding mechanism.
    [Show full text]
  • Fowl Adenovirus Recombinant Expressing VP2 of Infectious Bursal
    Arch Virol (1998) 143: 915–930 Fowl adenovirus recombinant expressing VP2 of infectious bursal disease virus induces protective immunity against bursal disease∗ M. Sheppard∗∗,W. Werner∗∗, E. Tsatas, R. McCoy∗∗∗, S. Prowse, and M. Johnson CSIRO, Division of Animal Health, Animal Health Research Laboratory, Victoria, Australia Accepted December 18, 1997 Summary. The right hand end Nde I fragment 3 (90.8–100 map units) of the fowl adenovirus serotype 10 (FAV-10) was characterised so as to allow the location of an insertion site for recombinant vector construction. Infectious bursal disease virus (IBDV) VP2 gene from the Australian classical strain 002/73, under the con- trol of the FAV-10 major late promoter/leader sequence (MLP/LS) was inserted into a unique Not I site that was generated at 99.5 map units. This recombinant virus was produced without deletion of any portion of the FAV-10 genome. When administered to specific pathogen free (SPF) chickens intravenously, intraperi- toneally, subcutaneously or intramuscularly, it was shown that the FAV-10/VP2 recombinant induced a serum VP2 antibody response and protected chickens against challenge with IBDV V877, an intermediate virulent classical strain. Birds were not protected when the recombinant was delivered via the conjunctival sac. Introduction Infectious bursal disease virus (IBDV) induces an immunosupressive disease of chickens. The primary effect of this disease is the destruction of B-lymphocytes [27] and consequently the severe impairing of the chicken to develop antibodies to other avian pathogens or vaccines [42]. Vaccinationof breeding hens sensitised by natural exposure, by live vaccine, or inactivated oil-emulsion vaccine, produces a long lasting high serum antibody response [36, 53].
    [Show full text]
  • Tumor-Related Microbiome in the Breast Microenvironment and Breast Cancer Na Wang1,2, Tao Sun1,3, Junnan Xu1,2
    Journal of Cancer 2021, Vol. 12 4841 Ivyspring International Publisher Journal of Cancer 2021; 12(16): 4841-4848. doi: 10.7150/jca.58986 Review Tumor-related Microbiome in the Breast Microenvironment and Breast Cancer Na Wang1,2, Tao Sun1,3, Junnan Xu1,2 1. Department of Breast Medicine, Cancer Hospital of China Medical University, Liaoning Cancer Hospital, Shenyang, China, 110042. 2. Department of Pharmacology, Cancer Hospital of China Medical University, Liaoning Cancer Hospital, Shenyang, China, 110042. 3. Key Laboratory of Liaoning Breast Cancer Research, Shenyang, Liaoning, China. Corresponding author: Junnan Xu, Department of Breast Medicine, Cancer Hospital of China Medical University, Liaoning Cancer Hospital and Institute, No.44 Xiaoheyan Road, Dadong District, Shenyang, Liaoning 110042, P.R. China. E-mail: [email protected]. © The author(s). This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/). See http://ivyspring.com/terms for full terms and conditions. Received: 2021.02.03; Accepted: 2021.05.30; Published: 2021.06.11 Abstract Despite the significant progress in diagnosis and treatment over the past years in the understanding of breast cancer pathophysiology, it remains one of the leading causes of mortality worldwide among females. Novel technologies are needed to improve better diagnostic and therapeutic approaches, and to better understand the role of tumor-environment microbiome players involved in the progression of this disease. The gut environment is enriched with over 100 trillion microorganisms, which participate in metabolic diseases, obesity, and inflammation, and influence the response to therapy. In addition to the direct metabolic effects of the gut microbiome, accumulating evidence has revealed that a microbiome also exists in the breast and in breast cancer tissue.
    [Show full text]
  • Viruses Associated with Antarctic Wildlife from Serology Based
    Virus Research 243 (2018) 91–105 Contents lists available at ScienceDirect Virus Research journal homepage: www.elsevier.com/locate/virusres Review Viruses associated with Antarctic wildlife: From serology based detection to MARK identification of genomes using high throughput sequencing ⁎ Zoe E. Smeelea,b, David G. Ainleyc, Arvind Varsania,b,d, a The Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine, School of Life Sciences, Arizona State University, Tempe, AZ 85287-5001, USA b School of Biological Sciences, University of Canterbury, Private Bag 4800, Christchurch, New Zealand c HT Harvey and Associates, Los Gatos, CA 95032, USA d Structural Biology Research Unit, Department of Clinical Laboratory Sciences, University of Cape Town, Rondebosch, 7701, Cape Town, South Africa ARTICLE INFO ABSTRACT Keywords: The Antarctic, sub-Antarctic islands and surrounding sea-ice provide a unique environment for the existence of Penguin organisms. Nonetheless, birds and seals of a variety of species inhabit them, particularly during their breeding Seal seasons. Early research on Antarctic wildlife health, using serology-based assays, showed exposure to viruses in Petrel the families Birnaviridae, Flaviviridae, Herpesviridae, Orthomyxoviridae and Paramyxoviridae circulating in seals Sharp spined notothen (Phocidae), penguins (Spheniscidae), petrels (Procellariidae) and skuas (Stercorariidae). It is only during the last Antarctica decade or so that polymerase chain reaction-based assays have been used to characterize viruses associated with Wildlife disease Antarctic animals. Furthermore, it is only during the last five years that full/whole genomes of viruses (ade- noviruses, anelloviruses, orthomyxoviruses, a papillomavirus, paramyoviruses, polyomaviruses and a togavirus) have been sequenced using Sanger sequencing or high throughput sequencing (HTS) approaches.
    [Show full text]
  • Birnavirus Ribonucleoprotein Assembly
    bioRxiv preprint doi: https://doi.org/10.1101/2020.08.06.240028; this version posted August 7, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Birnavirus Ribonucleoprotein Assembly 2 3 Idoia Busnadiego1,2,*, Maria T. Martín3, Diego S. Ferrero1,4, María G. Millán de la Blanca1,5, Laura 4 Broto1, Elisabeth Díaz-Beneitez1, Daniel Fuentes1, Dolores Rodríguez1, Nuria Verdaguer4, Leonor 5 Kremer3 and José F. Rodríguez1* 6 (1) Departamento de Biología Molecular y Celular. Centro Nacional de Biotecnología, Madrid, 7 28049, Spain (2) Institute of Medical Virology, University of Zurich, Zurich, 8057, Switzerland. (3) 8 Protein Tools Unit and Department of Immunology and Oncology. Centro Nacional de 9 Biotecnología, Madrid, 28049, Spain (4) Departamento de Biologia Estructural. Institut de 10 Biología Molecular de Barcelona, Barcelona, 08028, Spain (5) Departamento de Reproducción 11 Animal. Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria. Madrid, 28040, 12 Spain. 13 * To whom correspondence should be addressed. Idoia Busnadiego. Tel: +41 44 63 42620; Email: 14 [email protected]. Correspondence may also be addressed to José F. Rodríguez. 15 Email: [email protected] 16 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.08.06.240028; this version posted August 7, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 17 ABSTRACT 18 Birnaviruses are ancient evolutionary intermediates between double- and single- 19 stranded RNA viruses that package their dsRNA genomes as filamentous 20 ribonucleoproteins (RNP).
    [Show full text]
  • Four Novel Picornaviruses Detected in Magellanic Penguins ( Spheniscus
    Virology 560 (2021) 116–123 Contents lists available at ScienceDirect Virology journal homepage: www.elsevier.com/locate/virology Four novel picornaviruses detected in Magellanic Penguins (Spheniscus magellanicus) in Chile Juliette Hayer a,*, Michelle Wille b,c, Alejandro Font d, Marcelo Gonzalez-Aravena´ d, Helene Norder e,f, Maja Malmberg a,g,** a Department of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, Uppsala, Sweden b Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental Sciences and School of Medical Sciences, The University of Sydney, Sydney, Australia c Department of Microbiology and Immunology, At the Peter Doherty Institute for Infection and Immunity, The University of Melbourne, Melbourne, Australia d nstituto Antartico´ Chileno, Plaza Munoz~ Gamero, 1055, Punta Arenas, Chile e Department of Infectious Diseases/Virology, Institute of Biomedicine, Sahlgrenska Academy, University of Gothenburg, Sweden f Region Vastra¨ Gotaland,¨ Sahlgrenska University Hospital, Department of Clinical Microbiology, Gothenburg, Sweden g Department of Biomedical Sciences and Veterinary Public Health, Swedish University of Agricultural Sciences, Uppsala, Sweden ARTICLE INFO ABSTRACT Keywords: Members of the Picornaviridae family comprise a significantburden on the poultry industry, causing diseases such Sphenisciformes as gastroenteritis and hepatitis. However, with the advent of metagenomics, a number of picornaviruses have Penguins now been revealed in apparently healthy wild birds. In this study, we identified four novel viruses belonging to Picornaviridae the family Picornaviridae in healthy Magellanic penguins, a near threatened species. All samples were subse­ Viral metagenomics quently screened by RT-PCR for these new viruses, and approximately 20% of the penguins were infected with at Hepatovirus least one of these viruses.
    [Show full text]
  • Structure Unveils Relationships Between RNA Virus Polymerases
    viruses Article Structure Unveils Relationships between RNA Virus Polymerases Heli A. M. Mönttinen † , Janne J. Ravantti * and Minna M. Poranen * Molecular and Integrative Biosciences Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, Viikki Biocenter 1, P.O. Box 56 (Viikinkaari 9), 00014 Helsinki, Finland; heli.monttinen@helsinki.fi * Correspondence: janne.ravantti@helsinki.fi (J.J.R.); minna.poranen@helsinki.fi (M.M.P.); Tel.: +358-2941-59110 (M.M.P.) † Present address: Institute of Biotechnology, Helsinki Institute of Life Sciences (HiLIFE), University of Helsinki, Viikki Biocenter 2, P.O. Box 56 (Viikinkaari 5), 00014 Helsinki, Finland. Abstract: RNA viruses are the fastest evolving known biological entities. Consequently, the sequence similarity between homologous viral proteins disappears quickly, limiting the usability of traditional sequence-based phylogenetic methods in the reconstruction of relationships and evolutionary history among RNA viruses. Protein structures, however, typically evolve more slowly than sequences, and structural similarity can still be evident, when no sequence similarity can be detected. Here, we used an automated structural comparison method, homologous structure finder, for comprehensive comparisons of viral RNA-dependent RNA polymerases (RdRps). We identified a common structural core of 231 residues for all the structurally characterized viral RdRps, covering segmented and non-segmented negative-sense, positive-sense, and double-stranded RNA viruses infecting both prokaryotic and eukaryotic hosts. The grouping and branching of the viral RdRps in the structure- based phylogenetic tree follow their functional differentiation. The RdRps using protein primer, RNA primer, or self-priming mechanisms have evolved independently of each other, and the RdRps cluster into two large branches based on the used transcription mechanism.
    [Show full text]
  • Yellow Fever Virus Capsid Protein Is a Potent Suppressor of RNA Silencing That Binds Double-Stranded RNA
    Yellow fever virus capsid protein is a potent suppressor of RNA silencing that binds double-stranded RNA Glady Hazitha Samuela, Michael R. Wileyb,1, Atif Badawib, Zach N. Adelmana, and Kevin M. Mylesa,2 aDepartment of Entomology, Texas A&M University, College Station, TX 77843; and bDepartment of Entomology, Fralin Life Science Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061 Edited by George Dimopoulos, Johns Hopkins School of Public Health, Baltimore, MD, and accepted by Editorial Board Member Carolina Barillas-Mury October 6, 2016 (received for review January 13, 2016) Mosquito-borne flaviviruses, including yellow fever virus (YFV), Zika intermediates (RIs) produced during viral infection activate an an- virus (ZIKV), and West Nile virus (WNV), profoundly affect human tiviral defense based on RNA silencing (6). In flies, the ribonuclease health. The successful transmission of these viruses to a human host Dicer-2 (Dcr-2) recognizes dsRNA (7). Cleavage of dsRNA RIs by depends on the pathogen’s ability to overcome a potentially sterilizing Dcr-2 generates viral small interfering RNAs (vsiRNAs) ∼21 nt in immune response in the vector mosquito. Similar to other invertebrate length. These siRNA duplexes are incorporated into the RNA- animals and plants, the mosquito’s RNA silencing pathway comprises induced silencing complex (RISC). RISC maturation involves loading its primary antiviral defense. Although a diverse range of plant and a duplex siRNA, choosing and retaining a guide strand, and ejecting insect viruses has been found to encode suppressors of RNA silencing, the antiparallel passenger strand (8–11). The guide strand directs the mechanisms by which flaviviruses antagonize antiviral small RNA Argonaute 2 (Ago-2), an essential RISC component possessing en- pathways in disease vectors are unknown.
    [Show full text]