Differential Expression of Immunophilins FKBP51 and FKBP52 in the Frontal Cortex of HIV-Infected Patients with Major Depressive Disorder
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Nucleocytoplasmic Shuttling of the Glucocorticoid Receptor Is Influenced by Tetratricopeptide Repeat-Containing Proteins Gisela I
© 2020. Published by The Company of Biologists Ltd | Journal of Cell Science (2020) 133, jcs238873. doi:10.1242/jcs.238873 RESEARCH ARTICLE Nucleocytoplasmic shuttling of the glucocorticoid receptor is influenced by tetratricopeptide repeat-containing proteins Gisela I. Mazaira1,*, Pablo C. Echeverria2,* and Mario D. Galigniana1,3,‡ ABSTRACT FKBP52 (also known as FKBP4), FKBP51 (FKBP5) and CyP40 It has been demonstrated that tetratricopeptide-repeat (TPR) domain (PPID), and the immunophilin-like proteins PP5, FKBPL (WISp39) proteins regulate the subcellular localization of glucocorticoid receptor and FKBP37 (ARA9/XAP2/AIP) are counted among the best (GR). This study analyses the influence of the TPR domain of high characterized members of the TPR domain family of proteins molecular weight immunophilins in the retrograde transport and associated with nuclear receptor family members via Hsp90 (Pratt nuclear retention of GR. Overexpression of the TPR peptide et al., 2004a; Storer et al., 2011). TPR domains are composed of prevented efficient nuclear accumulation of the GR by disrupting the loosely conserved 34 amino acid sequence motifs that are found in formation of complexes with the dynein-associated immunophilin arrays comprising between 2 and 20 repeats, wherein the repeats pack FKBP52 (also known as FKBP4), the adaptor transporter importin-β1 against each other giving rise to coiled and superhelical structures (KPNB1), the nuclear pore-associated glycoprotein Nup62 and nuclear (Perez-Riba and Itzhaki, 2019). Originally identified in components of matrix-associated structures. We also show that nuclear import of GR the anaphase-promoting complex (Sikorski et al., 1991), TPR was impaired, whereas GR nuclear export was enhanced. domains are now known to mediate specific protein interactions in Interestingly, the CRM1 (exportin-1) inhibitor leptomycin-B abolished numerous cellular contexts. -
Compression of Large Sets of Sequence Data Reveals Fine Diversification of Functional Profiles in Multigene Families of Proteins
Technical note Compression of Large Sets of Sequence Data Reveals Fine Diversification of Functional Profiles in Multigene Families of Proteins: A Study for Peptidyl-Prolyl cis/trans Isomerases (PPIase) Andrzej Galat Retired from: Service d’Ingénierie Moléculaire des Protéines (SIMOPRO), CEA-Université Paris-Saclay, France; [email protected]; Tel.: +33-0164465072 Received: 21 December 2018; Accepted: 21 January 2019; Published: 11 February 2019 Abstract: In this technical note, we describe analyses of more than 15,000 sequences of FK506- binding proteins (FKBP) and cyclophilins, also known as peptidyl-prolyl cis/trans isomerases (PPIases). We have developed a novel way of displaying relative changes of amino acid (AA)- residues at a given sequence position by using heat-maps. This type of representation allows simultaneous estimation of conservation level in a given sequence position in the entire group of functionally-related paralogues (multigene family of proteins). We have also proposed that at least two FKBPs, namely FKBP36, encoded by the Fkbp6 gene and FKBP51, encoded by the Fkbp5 gene, can form dimers bound via a disulfide bridge in the nucleus. This type of dimer may have some crucial function in the regulation of some nuclear complexes at different stages of the cell cycle. Keywords: FKBP; cyclophilin; PPIase; heat-map; immunophilin 1 Introduction About 30 years ago, an exciting adventure began in finding some correlations between pharmacological activities of macrocyclic hydrophobic drugs, namely the cyclic peptide cyclosporine A (CsA), and two macrolides, namely FK506 and rapamycin, which have profound and clinically useful immunosuppressive effects, especially in organ transplantations and in combating some immune disorders. -
Naringenin Regulates FKBP4/NR3C1/TMEM173 Signaling Pathway in Autophagy and Proliferation of Breast Cancer and Tumor-Infltrating Dendritic Cell Maturation
Naringenin Regulates FKBP4/NR3C1/TMEM173 Signaling Pathway in Autophagy and Proliferation of Breast Cancer and Tumor-Inltrating Dendritic Cell Maturation Hanchu Xiong ( [email protected] ) Zhejiang Provincial People's Hospital https://orcid.org/0000-0001-6075-6895 Zihan Chen First Hospital of Zhejiang Province: Zhejiang University School of Medicine First Aliated Hospital Baihua Lin Zhejiang Provincial People's Hospital Cong Chen Zhejiang University School of Medicine Sir Run Run Shaw Hospital Zhaoqing Li Zhejiang University School of Medicine Sir Run Run Shaw Hospital Yongshi Jia Zhejiang Provincial People's Hospital Linbo Wang Zhejiang University School of Medicine Sir Run Run Shaw Hospital Jichun Zhou Zhejiang University School of Medicine Sir Run Run Shaw Hospital Research Keywords: FKBP4, TMEM173, Autophagy, Exosome, Dendritic cell, Breast cancer Posted Date: July 7th, 2021 DOI: https://doi.org/10.21203/rs.3.rs-659646/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/38 Abstract Background TMEM173 is a pattern recognition receptor detecting cytoplasmic nucleic acids and transmits cGAS related signals that activate host innate immune responses. It has also been found to be involved in tumor immunity and tumorigenesis. Methods Bc-GenExMiner, PROMO and STRING database were used for analyzing clinical features and interplays of FKBP4, TMEM173 and NR3C1. Transient transfection, western blotting, quantitative real-time PCR, luciferase reporter assay, immunouorescence and nuclear and cytoplasmic fractionation were used for regulation of FKBP4, TMEM173 and NR3C1. Both knockdown and overexpression of FKBP4, TMEM173 and NR3C1 were used to analyze effects on autophagy and proliferation of breast cancer (BC) cells. -
Consensus Tetratricopeptide Repeat Proteins Are Complex Superhelical 2 Nanosprings
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.27.437344; this version posted August 30, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Consensus tetratricopeptide repeat proteins are complex superhelical 2 nanosprings 1, ∗ 1 1 2 2 3 Marie Synakewicz, Rohan S. Eapen, Albert Perez-Riba, Daniela Bauer, Andreas Weißl, 3 3 2 1, ∗ 4, ∗ 4 Gerhard Fischer, Marko Hyv¨onen, Matthias Rief, Laura S. Itzhaki, and Johannes Stigler 1 5 Department of Pharmacology, University of Cambridge, 6 Tennis Court Road, Cambridge, CB2 1PD, United Kingdom 2 7 Physik-Department, Technische Universit¨atM¨unchen, 8 James-Franck-Straße 1, 85748 Garching, Germany 3 9 Department of Biochemistry, University of Cambridge, 10 Tennis Court Road, Cambridge, CB2 1GA, United Kingdom 4 11 Gene Center Munich, Ludwig-Maximilians-Universit¨atM¨unchen, 12 Feodor-Lynen-Straße 25, 81377 M¨unchen,Germany 13 (Dated: August 20, 2021) Abstract. Tandem-repeat proteins comprise small secondary structure motifs that stack to form one- dimensional arrays with distinctive mechanical properties that are proposed to direct their cellular functions. Here, we use single-molecule optical tweezers to study the folding of consensus-designed tetratricopeptide repeats (CTPRs) | superhelical arrays of short helix-turn-helix motifs. We find that CTPRs display a spring-like mechanical response in which individual repeats undergo rapid equilibrium fluctuations between folded and unfolded conformations. We rationalise the force response using Ising models and dissect the folding pathway of CTPRs under mechanical load, revealing how the repeat arrays form from the centre towards both termini simultaneously. -
Small Glutamine-Rich Tetratricopeptide Repeat
www.nature.com/scientificreports OPEN Small Glutamine-Rich Tetratricopeptide Repeat- Containing Protein Alpha (SGTA) Received: 04 January 2016 Accepted: 07 June 2016 Ablation Limits Offspring Viability Published: 30 June 2016 and Growth in Mice Lisa K. Philp1, Tanya K. Day1, Miriam S. Butler1, Geraldine Laven-Law1, Shalini Jindal1, Theresa E. Hickey1, Howard I. Scher2, Lisa M. Butler1,3,* & Wayne D. Tilley1,3,* Small glutamine-rich tetratricopeptide repeat-containing protein α (SGTA) has been implicated as a co-chaperone and regulator of androgen and growth hormone receptor (AR, GHR) signalling. We investigated the functional consequences of partial and full Sgta ablation in vivo using Cre-lox Sgta- null mice. Sgta+/− breeders generated viable Sgta−/− offspring, but at less than Mendelian expectancy. Sgta−/− breeders were subfertile with small litters and higher neonatal death (P < 0.02). Body size was significantly and proportionately smaller in male and femaleSgta −/− (vs WT, Sgta+/− P < 0.001) from d19. Serum IGF-1 levels were genotype- and sex-dependent. Food intake, muscle and bone mass and adiposity were unchanged in Sgta−/−. Vital and sex organs had normal relative weight, morphology and histology, although certain androgen-sensitive measures such as penis and preputial size, and testis descent, were greater in Sgta−/−. Expression of AR and its targets remained largely unchanged, although AR localisation was genotype- and tissue-dependent. Generally expression of other TPR- containing proteins was unchanged. In conclusion, this thorough investigation of SGTA-null mutation reports a mild phenotype of reduced body size. The model’s full potential likely will be realised by genetic crosses with other models to interrogate the role of SGTA in the many diseases in which it has been implicated. -
Supplementary Table S4. FGA Co-Expressed Gene List in LUAD
Supplementary Table S4. FGA co-expressed gene list in LUAD tumors Symbol R Locus Description FGG 0.919 4q28 fibrinogen gamma chain FGL1 0.635 8p22 fibrinogen-like 1 SLC7A2 0.536 8p22 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 DUSP4 0.521 8p12-p11 dual specificity phosphatase 4 HAL 0.51 12q22-q24.1histidine ammonia-lyase PDE4D 0.499 5q12 phosphodiesterase 4D, cAMP-specific FURIN 0.497 15q26.1 furin (paired basic amino acid cleaving enzyme) CPS1 0.49 2q35 carbamoyl-phosphate synthase 1, mitochondrial TESC 0.478 12q24.22 tescalcin INHA 0.465 2q35 inhibin, alpha S100P 0.461 4p16 S100 calcium binding protein P VPS37A 0.447 8p22 vacuolar protein sorting 37 homolog A (S. cerevisiae) SLC16A14 0.447 2q36.3 solute carrier family 16, member 14 PPARGC1A 0.443 4p15.1 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha SIK1 0.435 21q22.3 salt-inducible kinase 1 IRS2 0.434 13q34 insulin receptor substrate 2 RND1 0.433 12q12 Rho family GTPase 1 HGD 0.433 3q13.33 homogentisate 1,2-dioxygenase PTP4A1 0.432 6q12 protein tyrosine phosphatase type IVA, member 1 C8orf4 0.428 8p11.2 chromosome 8 open reading frame 4 DDC 0.427 7p12.2 dopa decarboxylase (aromatic L-amino acid decarboxylase) TACC2 0.427 10q26 transforming, acidic coiled-coil containing protein 2 MUC13 0.422 3q21.2 mucin 13, cell surface associated C5 0.412 9q33-q34 complement component 5 NR4A2 0.412 2q22-q23 nuclear receptor subfamily 4, group A, member 2 EYS 0.411 6q12 eyes shut homolog (Drosophila) GPX2 0.406 14q24.1 glutathione peroxidase -
DNA Methylation of FKBP5 in South African Women: Associations with Obesity and Insulin Resistance Tarryn Willmer1,2* , Julia H
Willmer et al. Clinical Epigenetics (2020) 12:141 https://doi.org/10.1186/s13148-020-00932-3 RESEARCH Open Access DNA methylation of FKBP5 in South African women: associations with obesity and insulin resistance Tarryn Willmer1,2* , Julia H. Goedecke3,4, Stephanie Dias1, Johan Louw1,5 and Carmen Pheiffer1,2 Abstract Background: Disruption of the hypothalamic–pituitary–adrenal (HPA) axis, a neuroendocrine system associated with the stress response, has been hypothesized to contribute to obesity development. This may be mediated through epigenetic modulation of HPA axis-regulatory genes in response to metabolic stressors. The aim of this study was to investigate adipose tissue depot-specific DNA methylation differences in the glucocorticoid receptor (GR) and its co-chaperone, FK506-binding protein 51 kDa (FKBP5), both key modulators of the HPA axis. Methods: Abdominal subcutaneous adipose tissue (ASAT) and gluteal subcutaneous adipose tissue (GSAT) biopsies were obtained from a sample of 27 obese and 27 normal weight urban-dwelling South African women. DNA methylation and gene expression were measured by pyrosequencing and quantitative real-time PCR, respectively. Spearman’s correlation coefficients, orthogonal partial least-squares discriminant analysis and multivariable linear regression were performed to evaluate the associations between DNA methylation, messenger RNA (mRNA) expression and key indices of obesity and metabolic dysfunction. Results: Two CpG dinucleotides within intron 7 of FKBP5 were hypermethylated in both ASAT and GSAT in obese compared to normal weight women, while no differences in GR methylation were observed. Higher percentage methylation of the two FKBP5 CpG sites correlated with adiposity (body mass index and waist circumference), insulin resistance (homeostasis model for insulin resistance, fasting insulin and plasma adipokines) and systemic inflammation (c-reactive protein) in both adipose depots. -
Impact of Fkbp5 × Early Life Adversity × Sex in Humanized Mice on Multidimen- Sional Stress Responses and Circadian Rhythmicity
bioRxiv preprint doi: https://doi.org/10.1101/2021.07.06.450863; this version posted July 8, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Title Page Title Impact of Fkbp5 × Early Life Adversity × Sex in Humanized Mice on Multidimen- sional Stress Responses and Circadian Rhythmicity Corresponding Author M.Sc. Verena Nold Boehringer Ingelheim Pharma GmbH & Co KG, CNSDR (and Ulm University, Clinical & Biological Psychology) Birkendorferstraße 65 88397 Biberach an der Riß Germany [email protected] https://orcid.org/0000-0003-0302-0966 Phone +49 (7351) 54-187968 Co-Authors Michelle Portenhauser, Boehringer Ingelheim Pharma GmbH & Co KG Dr. Dolores Del Prete, BioMedX Institute, Heidelberg Andrea Blasius, Boehringer Ingelheim Pharma GmbH & Co KG Isabella Harris, University of Manchester, England Dr. Eliza Koros, Boehringer Ingelheim Pharma GmbH & Co KG Dr. Tatiana Peleh, Boehringer Ingelheim Pharma GmbH & Co KG Prof. Dr. Bastian Hengerer, Boehringer Ingelheim Pharma GmbH & Co KG Prof. Dr. Iris-Tatjana Kolassa, Ulm University, Clinical & Biological Psychology Dr. Michal Slezak,Lukasiewicz Research Network - Polish Center for Technology Development Dr. Kelly Ann Allers, Boehringer Ingelheim Pharma GmbH & Co KG Running Title Early Life Adversity × Fkbp5 Polymorphisms Modulate Adult Stress Physiology Keywords Fkbp5, early life adversity, stress resilience, psychiatric disorder, animal model, cir- cadian rhythmicity 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.07.06.450863; this version posted July 8, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
Appendix 2. Significantly Differentially Regulated Genes in Term Compared with Second Trimester Amniotic Fluid Supernatant
Appendix 2. Significantly Differentially Regulated Genes in Term Compared With Second Trimester Amniotic Fluid Supernatant Fold Change in term vs second trimester Amniotic Affymetrix Duplicate Fluid Probe ID probes Symbol Entrez Gene Name 1019.9 217059_at D MUC7 mucin 7, secreted 424.5 211735_x_at D SFTPC surfactant protein C 416.2 206835_at STATH statherin 363.4 214387_x_at D SFTPC surfactant protein C 295.5 205982_x_at D SFTPC surfactant protein C 288.7 1553454_at RPTN repetin solute carrier family 34 (sodium 251.3 204124_at SLC34A2 phosphate), member 2 238.9 206786_at HTN3 histatin 3 161.5 220191_at GKN1 gastrokine 1 152.7 223678_s_at D SFTPA2 surfactant protein A2 130.9 207430_s_at D MSMB microseminoprotein, beta- 99.0 214199_at SFTPD surfactant protein D major histocompatibility complex, class II, 96.5 210982_s_at D HLA-DRA DR alpha 96.5 221133_s_at D CLDN18 claudin 18 94.4 238222_at GKN2 gastrokine 2 93.7 1557961_s_at D LOC100127983 uncharacterized LOC100127983 93.1 229584_at LRRK2 leucine-rich repeat kinase 2 HOXD cluster antisense RNA 1 (non- 88.6 242042_s_at D HOXD-AS1 protein coding) 86.0 205569_at LAMP3 lysosomal-associated membrane protein 3 85.4 232698_at BPIFB2 BPI fold containing family B, member 2 84.4 205979_at SCGB2A1 secretoglobin, family 2A, member 1 84.3 230469_at RTKN2 rhotekin 2 82.2 204130_at HSD11B2 hydroxysteroid (11-beta) dehydrogenase 2 81.9 222242_s_at KLK5 kallikrein-related peptidase 5 77.0 237281_at AKAP14 A kinase (PRKA) anchor protein 14 76.7 1553602_at MUCL1 mucin-like 1 76.3 216359_at D MUC7 mucin 7, -
Interaction of Polymorphisms in the Fkbp5 Gene & Childhood Adversity on the Cortisol Response to a Psychosocial Stress Task in Adolescents and Young Adults
INTERACTION OF POLYMORPHISMS IN THE FKBP5 GENE & CHILDHOOD ADVERSITY ON THE CORTISOL RESPONSE TO A PSYCHOSOCIAL STRESS TASK IN ADOLESCENTS AND YOUNG ADULTS by Raegan Mazurka A thesis submitted to the Department of Psychology In conformity with the requirements for the degree of Master of Science Queen’s University Kingston, Ontario, Canada (September, 2013) Copyright © Raegan Mazurka, 2013 Abstract Childhood adversity is often associated with devastating physical, cognitive, and psychosocial outcomes, and is a major public health problem in terms of its prevalence and economic cost. Childhood adversity is associated with increased risk for psychopathology, as well as with dysregulation of the neurobiological stress response. An additional factor known to alter neuroendocrine functioning and increase psychopathology risk is polymorphisms within the FKBP5 gene. The goal of the current study was to examine the gene-environment interaction of childhood adversity and variation in the FKBP5 gene on the cortisol response to a psychosocial stress task (i.e., the Trier Social Stress Test). The final sample consisted of 90 depressed and non- depressed adolescents and young adults (11 - 21 years). Childhood adversity was assessed using the Childhood Experience and Abuse Scale (CECA; Bifulco et al., 1994), and was defined as the presence versus absence prior to 18 years of age of severe physical, sexual, or emotional abuse or neglect, witness to domestic discord/violence, or peer-perpetrated bullying. Participants were genotyped at the rs1360780 site of the FKBP5 gene and grouped according to whether they had at least one risk T allele (i.e., TT or TC genotype versus the CC genotype). -
Roadmap for Resilience: the California Surgeon General's
DECEMBER 09, 2020 Roadmap for Resilience The California Surgeon General’s Report on Adverse Childhood Experiences, Toxic Stress, and Health Roadmap for Resilience: The California Surgeon General’s Report on Adverse Childhood Experiences, Toxic Stress, and Health Suggested citation for the report: Bhushan D, Kotz K, McCall J, Wirtz S, Gilgoff R, Dube SR, Powers C, Olson-Morgan J, Galeste M, Patterson K, Harris L, Mills A, Bethell C, Burke Harris N, Office of the California Surgeon General. Roadmap for Resilience: The California Surgeon General’s Report on Adverse Childhood Experiences, Toxic Stress, and Health. Office of the California Surgeon General, 2020. DOI: 10.48019/PEAM8812. OFFICE OF THE GOVERNOR December 2, 2020 In one of my first acts as Governor, I established the role of California Surgeon General. Among all the myriad challenges facing our administration on the first day, addressing persistent challenges to the health and welfare of the people of our state—especially that of the youngest Californians—was an essential priority. We led with the overwhelming scientific consensus that upstream factors, including toxic stress and the social determinants of health, are the root causes of many of the most harmful and persistent health challenges, from heart disease to homelessness. An issue so critical to the health of 40 million Californians deserved nothing less than a world-renowned expert and advocate. Appointed in 2019 to be the first- ever California Surgeon General, Dr. Nadine Burke Harris brought groundbreaking research and expertise in childhood trauma and adversity to the State’s efforts. In this new role, Dr. Burke Harris set three key priorities – early childhood, health equity and Adverse Childhood Experiences (ACEs) and toxic stress – and is working across my administration to give voice to the science and evidence-based practices that are foundational to the success of our work as a state. -
Exploring the Folding Energy Landscape of a Series of Designed Consensus Tetratricopeptide Repeat Proteins
PHYSICS, BIOPHYSICS AND COMPUTATIONAL BIOLOGY BIOPHYSICS AND COMPUTATIONAL BIOLOGY Correction for ‘‘The role of fluctuations and stress on the Correction for ‘‘Exploring the folding energy landscape of a effective viscosity of cell aggregates,’’ by Philippe Marmottant, series of designed consensus tetratricopeptide repeat proteins,’’ Abbas Mgharbel, Jos Ka¨fer,Benjamin Audren, Jean-Paul Rieu, by Yalda Javadi and Ewan R. G. Main, which appeared in issue Jean-Claude Vial, Boudewijn van der Sanden, Athanasius F. M. 41, October 13, 2009, of Proc Natl Acad Sci USA (106:17383– Mare´e, Franc¸ois Graner, and He´le`ne Delanoe¨-Ayari, which 17388; first published October 1, 2009; 10.1073/pnas. appeared in issue 41, October 13, 2009, of Proc Natl Acad Sci 0907455106). USA (106:17271–17275; first published September 25, 2009; The authors note that, due to a printer’s error, some text 10.1073/pnas.0902085106). appeared incorrectly on page 17384. In the left column, the The authors note that, due to a printer’s error, the affiliation second sentence in the third full paragraph, ‘‘This yielded [D]50% for Abbas Mgharbel, Benjamin Audren, Jean-Paul Rieu, and (midpoint of unfolding) and mD-N (change in solvent-accessible ⌬ H2O ⌬ H2O He´le`ne Delanoe¨-Ayari at Universite´ de Lyon appeared incor- surface area upon protein unfolding) from which GD–N/ G03j rectly in part. The name of the authors’ laboratory, Laboratoire (free energy of unfolding in water) was calculated (Table S1),’’ Mate´riaux et Phe´nome`nes Quantiques, should instead have should instead have appeared as ‘‘This yielded [D]50% (midpoint appeared as Laboratoire de Physique de la Matie`re Condense´e of unfolding) and mD-N (change in solvent-accessible surface ⌬ H2O et Nanostructures.