Bucy Syndrome Associated with a Recessive Variant in HGSNAT in Two Siblings with Mucopolysaccharidosis Type IIIC (Sanfilippo C)
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Supplementary Materials
1 Supplementary Materials: Supplemental Figure 1. Gene expression profiles of kidneys in the Fcgr2b-/- and Fcgr2b-/-. Stinggt/gt mice. (A) A heat map of microarray data show the genes that significantly changed up to 2 fold compared between Fcgr2b-/- and Fcgr2b-/-. Stinggt/gt mice (N=4 mice per group; p<0.05). Data show in log2 (sample/wild-type). 2 Supplemental Figure 2. Sting signaling is essential for immuno-phenotypes of the Fcgr2b-/-lupus mice. (A-C) Flow cytometry analysis of splenocytes isolated from wild-type, Fcgr2b-/- and Fcgr2b-/-. Stinggt/gt mice at the age of 6-7 months (N= 13-14 per group). Data shown in the percentage of (A) CD4+ ICOS+ cells, (B) B220+ I-Ab+ cells and (C) CD138+ cells. Data show as mean ± SEM (*p < 0.05, **p<0.01 and ***p<0.001). 3 Supplemental Figure 3. Phenotypes of Sting activated dendritic cells. (A) Representative of western blot analysis from immunoprecipitation with Sting of Fcgr2b-/- mice (N= 4). The band was shown in STING protein of activated BMDC with DMXAA at 0, 3 and 6 hr. and phosphorylation of STING at Ser357. (B) Mass spectra of phosphorylation of STING at Ser357 of activated BMDC from Fcgr2b-/- mice after stimulated with DMXAA for 3 hour and followed by immunoprecipitation with STING. (C) Sting-activated BMDC were co-cultured with LYN inhibitor PP2 and analyzed by flow cytometry, which showed the mean fluorescence intensity (MFI) of IAb expressing DC (N = 3 mice per group). 4 Supplemental Table 1. Lists of up and down of regulated proteins Accession No. -
Towards the Elucidation of Orphan Lysosomal Transporters Quentin Verdon
Towards the Elucidation of Orphan Lysosomal Transporters Quentin Verdon To cite this version: Quentin Verdon. Towards the Elucidation of Orphan Lysosomal Transporters. Cancer. Université Paris Saclay (COmUE), 2016. English. NNT : 2016SACLS144. tel-01827233 HAL Id: tel-01827233 https://tel.archives-ouvertes.fr/tel-01827233 Submitted on 2 Jul 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. NNT : 2016SACLS144 THESE DE DOCTORAT DE L’UNIVERSITE PARIS-SACLAY PREPAREE A L’UNIVERSITE PARIS-SUD ECOLE DOCTORALE N°568 BIOSIGNE | Signalisations et réseaux intégratifs en biologie Spécialité de doctorat : aspects moléculaires et cellulaires de la biologie Par Mr Quentin Verdon Towards the elucidation of orphan lysosomal transporters: several shots on target and one goal Thèse présentée et soutenue à Paris le 29/06/2016 » : Composition du Jury : Mr Le Maire Marc Professeur, Université Paris-Sud Président Mr Birman Serge Directeur de recherche, CNRS Rapporteur Mr Murray James Assistant professor, Trinity college Dublin Rapporteur Mr Goud Bruno Directeur de recherche, CNRS Examinateur Mr Gasnier Bruno Directeur de recherche, CNRS Directeur de thèse Mme Sagné Corinne Chargée de recherche, INSERM Co-directeur de thèse Table of contents Remerciements (acknowledgements) 6 Abbreviations 7 Abstracts 10 Introduction 12 1 Physiology of lysosomes 12 1.1 Discovery and generalities 12 1.2 Degradative function 13 1.3. -
SUMF1 Enhances Sulfatase Activities in Vivo in Five Sulfatase Deficiencies
SUMF1 enhances sulfatase activities in vivo in five sulfatase deficiencies Alessandro Fraldi, Alessandra Biffi, Alessia Lombardi, Ilaria Visigalli, Stefano Pepe, Carmine Settembre, Edoardo Nusco, Alberto Auricchio, Luigi Naldini, Andrea Ballabio, et al. To cite this version: Alessandro Fraldi, Alessandra Biffi, Alessia Lombardi, Ilaria Visigalli, Stefano Pepe, et al.. SUMF1 enhances sulfatase activities in vivo in five sulfatase deficiencies. Biochemical Journal, Portland Press, 2007, 403 (2), pp.305-312. 10.1042/BJ20061783. hal-00478708 HAL Id: hal-00478708 https://hal.archives-ouvertes.fr/hal-00478708 Submitted on 30 Apr 2010 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Biochemical Journal Immediate Publication. Published on 8 Jan 2007 as manuscript BJ20061783 SUMF1 enhances sulfatase activities in vivo in five sulfatase deficiencies Alessandro Fraldi*1, Alessandra Biffi*2,3¥, Alessia Lombardi1, Ilaria Visigalli2, Stefano Pepe1, Carmine Settembre1, Edoardo Nusco1, Alberto Auricchio1, Luigi Naldini2,3, Andrea Ballabio1,4 and Maria Pia Cosma1¥ * These authors contribute equally to this work 1TIGEM, via P Castellino, 111, 80131 Naples, Italy 2San Raffaele Telethon Institute for Gene Therapy (HSR-TIGET), H. San Raffaele Scientific Institute, Milan 20132, Italy 3Vita Salute San Raffaele University Medical School, H. -
Bioinformatics Classification of Mutations in Patients with Mucopolysaccharidosis IIIA
Metabolic Brain Disease (2019) 34:1577–1594 https://doi.org/10.1007/s11011-019-00465-6 ORIGINAL ARTICLE Bioinformatics classification of mutations in patients with Mucopolysaccharidosis IIIA Himani Tanwar1 & D. Thirumal Kumar1 & C. George Priya Doss1 & Hatem Zayed2 Received: 30 April 2019 /Accepted: 8 July 2019 /Published online: 5 August 2019 # The Author(s) 2019 Abstract Mucopolysaccharidosis (MPS) IIIA, also known as Sanfilippo syndrome type A, is a severe, progressive disease that affects the central nervous system (CNS). MPS IIIA is inherited in an autosomal recessive manner and is caused by a deficiency in the lysosomal enzyme sulfamidase, which is required for the degradation of heparan sulfate. The sulfamidase is produced by the N- sulphoglucosamine sulphohydrolase (SGSH) gene. In MPS IIIA patients, the excess of lysosomal storage of heparan sulfate often leads to mental retardation, hyperactive behavior, and connective tissue impairments, which occur due to various known missense mutations in the SGSH, leading to protein dysfunction. In this study, we focused on three mutations (R74C, S66W, and R245H) based on in silico pathogenic, conservation, and stability prediction tool studies. The three mutations were further subjected to molecular dynamic simulation (MDS) analysis using GROMACS simulation software to observe the structural changes they induced, and all the mutants exhibited maximum deviation patterns compared with the native protein. Conformational changes were observed in the mutants based on various geometrical parameters, such as conformational stability, fluctuation, and compactness, followed by hydrogen bonding, physicochemical properties, principal component analysis (PCA), and salt bridge analyses, which further validated the underlying cause of the protein instability. Additionally, secondary structure and surrounding amino acid analyses further confirmed the above results indicating the loss of protein function in the mutants compared with the native protein. -
EGL Test Description
2460 Mountain Industrial Boulevard | Tucker, Georgia 30084 Phone: 470-378-2200 or 855-831-7447 | Fax: 470-378-2250 eglgenetics.com Mucopolysaccharidosis Type III: SGSH, GNS, HGSNAT, and NAGLU Gene Deletion/Duplication Panel Test Code: HV Turnaround time: 2 weeks CPT Codes: 81228 x1 Condition Description Mucopolysaccharidosis type III (MPS III, Sanfilippo syndrome), is a member of a group of inherited metabolic disorders collectively termed mucopolysaccharidoses (MPS's). The MPS's are caused by a deficiency of lysosomal enzymes required for the degradation of mucopolysaccharides or glycosaminoglycans (GAGs) within the lysosome [1]. When functioning normally, the lysosomal enzymes break down these GAGs, however when the enzyme is deficient, the GAGs build up in the lysosomes causing damage to the body's tissues. The MPS's share a chronic progressive course with multisystem involvement and characteristic physical features such as coarse facies, hypertelorism, and coarse hair. The MPS patients are also characterized by developmental regression, hepatosplenomegaly and characteristic laboratory and radiographic abnormalities. Clinical features of MPS III are similar to other MPS's and include hyperactivity, aggressiveness, and developmental delays in childhood. Mental abilities decline as the disease progresses. Involvement of other organ systems tends to be mild and dysmorphic features are more subtle than those observed in other type of mucopolysaccharidosis [1]. MPS III is caused by a deficiency of any of four lysosomal membrane enzymes, which leads to impaired degradation of heparan sulfate. The forms of MPS III are clinically indistinguishable each other and are caused by mutations in distinct genes. All four forms of MPS III result in buildup of the same GAG, heparin sulfate. -
Mucopolysaccharidosis Type IIIA, and a Child with One SGSH Mutation and One GNS Mutation Is a Carrier
Mucopolysaccharidosis type III What is mucopolysaccharidosis type III? Mucopolysaccharidosis type III is an inherited metabolic disease that affects the central nervous system. Individuals with mucopolysaccharidosis type III have defects in one of four different enzymes required for the breakdown of large sugars known as glycosaminoglycans or mucopolysaccharides.1 The four enzymes, sulfamidase, alpha-N- acetylglucosaminidase, N-acetyltransferase, and N-acetylglucosamine-6-sulfatase, are associated with mucopolysaccharidosis types IIIA, IIIB, IIIC, and IIID, respectively.2-5 The signs and symptoms of all subtypes of mucopolysaccharidosis type III are similar and due to the build-up of the large sugar molecular heparan sulfate within lysosomes in cells. Mucopolysaccharidosis type III belongs to a group of diseases called lysosomal storage disorders and is also known as Sanfilippo syndrome.6 What are the symptoms of mucopolysaccharidosis type III and what treatment is available? Symptoms of mucopolysaccharidosis type III vary in severity and age at onset and are progressive. Affected individuals typically show no symptoms at birth.6 Signs and symptoms are typically seen in early childhood and may include:7 • Developmental and speech delays • Progressive cognitive deterioration and behavioral problems • Sleep disturbances • Frequent infections • Cardiac valve disease • Umbilical or groin hernias • Mild hepatomegaly (enlarged liver) • Decline in motor skills • Hearing loss and vision problems • Skeletal problems, including hip dysplasia and -
Mucopolysaccharidosis I Diagnosing MPS I
CME/CE Mucopolysaccharidosis I Diagnosing MPS I Paul Orchard, MD Medical Director, Inherited Metabolic and Storage Disease Program Professor of Pediatrics, Division of Blood and Marrow Transplantation University of Minnesota Medical School Mucopolysaccharidosis type I (MPS I) is a Lysosomal Storage Disorder Lysosomal Storage Disorders (>50 identified) Overall Incidence of ~ 1:8,000 MPS Disorders (7 types) Incidence 1:25,000 – 50,000 MPS I Incidence 1:100,000 NIH Rare Disease Database: MPS. 2019. https://rarediseases.info.nih.gov/diseases/7065/mucopolysaccharidosis Mucopolysaccharidoses MPS Type Common Name Gene Mutation MPS I Hurler, Hurler-Scheie, Scheie syndrome IDUA MPS II Hunter syndrome IDS MPS III Sanfilippo syndrome GNS, HGSNAT, NAGLU, SGSH MPS IV Morquio syndrome GALNS, GLB1 MPS VI Maroteaux-Lamy syndrome ARSB MPS VII Sly syndrome GUSB NIH Rare Disease Database: MPS. 2019. https://rarediseases.info.nih.gov/diseases/7065/mucopolysaccharidosis What is MPS I? Mucopolysaccharidosis I (MPS I) • Lysosomal “storage disease” • Mutations in a-L-iduronidase (IDUA) gene, leading to: • increased glycosaminoglycans (dermatan sulphate and heparan sulphate) • An autosomal recessive disease • Disease severity and symptom onset varies • Two subtypes • Hurler syndrome (Severe MPS I, or MPS IH) • Attenuated MPS I (previously Scheie, or Hurler-Scheie syndrome • 1 in 100,000 births (Severe MPS I) • 1 in 500,000 births (Attenuated MPS I) Jameson et al. Cochrane Rev. 2016; CD009354. Kabuska et al. Diagnostics. 2020;10: 161. Mucopolysaccharidosis type I. US National Library of Medicine website. Multiple Symptoms Macrosomia Developmental delay Chronic rhinitis/otitis Corneal clouding Obstructive airway disease Hearing loss Umbilical/inguinal hernia Enlarged tongue Skeletal deformities Cardiovascular disease Hepatosplenomegaly Carpal tunnel syndrome Joint stiffness Adapted from Neufeld et al. -
Human Induced Pluripotent Stem Cell–Derived Podocytes Mature Into Vascularized Glomeruli Upon Experimental Transplantation
BASIC RESEARCH www.jasn.org Human Induced Pluripotent Stem Cell–Derived Podocytes Mature into Vascularized Glomeruli upon Experimental Transplantation † Sazia Sharmin,* Atsuhiro Taguchi,* Yusuke Kaku,* Yasuhiro Yoshimura,* Tomoko Ohmori,* ‡ † ‡ Tetsushi Sakuma, Masashi Mukoyama, Takashi Yamamoto, Hidetake Kurihara,§ and | Ryuichi Nishinakamura* *Department of Kidney Development, Institute of Molecular Embryology and Genetics, and †Department of Nephrology, Faculty of Life Sciences, Kumamoto University, Kumamoto, Japan; ‡Department of Mathematical and Life Sciences, Graduate School of Science, Hiroshima University, Hiroshima, Japan; §Division of Anatomy, Juntendo University School of Medicine, Tokyo, Japan; and |Japan Science and Technology Agency, CREST, Kumamoto, Japan ABSTRACT Glomerular podocytes express proteins, such as nephrin, that constitute the slit diaphragm, thereby contributing to the filtration process in the kidney. Glomerular development has been analyzed mainly in mice, whereas analysis of human kidney development has been minimal because of limited access to embryonic kidneys. We previously reported the induction of three-dimensional primordial glomeruli from human induced pluripotent stem (iPS) cells. Here, using transcription activator–like effector nuclease-mediated homologous recombination, we generated human iPS cell lines that express green fluorescent protein (GFP) in the NPHS1 locus, which encodes nephrin, and we show that GFP expression facilitated accurate visualization of nephrin-positive podocyte formation in -
EGL Test Description
2460 Mountain Industrial Boulevard | Tucker, Georgia 30084 Phone: 470-378-2200 or 855-831-7447 | Fax: 470-378-2250 eglgenetics.com Inherited Metabolic Disorders Panel: Sequencing and CNV Analysis Test Code: MM310 Turnaround time: 6 weeks CPT Codes: 81404 x1, 81406 x1, 81405 x1 Condition Description Inherited metabolic disorders refer to diseases caused by defects in genes that are involved in the body’s metabolism. These usually involve the production, conversion, or use of energy. Traditionally, inherited metabolic conditions were broadly classified as disorders of carbohydrate metabolism, amino acid metabolism, organic acid metabolism, or lysosomal storage diseases. This test analyses genes involved in complex metabolic processes in the body including but not limited to the above four categories. Reference: OMIM. Genes ACAD9, ACADL, ACADM, ACADS, ACADVL, ACSF3, AGA, AGL, ALDH5A1, ARSA, ASL, ASS1, ATPAF2, AUH, BCKDHA, BCKDHB, CD320, CLN3, CLN5, CLN6, CLN8, CPS1, CPT1A, CPT2, CYP27A1, DBT, DLD, ENO3, ETFA, ETFB, ETFDH, G6PC, GAA, GALC, GALNS, GBA, GBE1, GLA, GLB1, GM2A, GNPTAB, GYS1, GYS2, HADHA, HADHB, HGSNAT, HMGCL, HMGCS2, HYAL1, IDS, IDUA, IVD, LIPA, LMBRD1, LPIN1, MAN2B1, MANBA, MCCC1, MCCC2, MCEE, MCOLN1, MFSD8, MLYCD, MMAA, MMAB, MMACHC, MMADHC, MMUT, MTR, MTRR, NAGA, NAGLU, NAGS, NEU1, NPC1, NPC2, OPA3, OTC, PC, PCCA, PCCB, PFKM, POLG, PPT1, PYGL, PYGM, SERAC1, SGSH, SLC17A5, SLC22A5, SLC25A13, SLC25A15, SLC25A20, SLC37A4, SLC7A7, SMPD1, SUCLG1, SUMF1, TAZ, TMEM70, TPP1 Indications This test is indicated for: Confirmation of a clinical diagnosis of inherited metabolic disorders. Methodology Next Generation Sequencing: In-solution hybridization of all coding exons is performed on the patient's genomic DNA. Although some deep intronic regions may also be analyzed, this assay is not meant to interrogate most promoter regions, deep intronic regions, or other regulatory elements, and does not detect single or multi-exon deletions or duplications. -
Discover Dysplasias Gene Panel
Discover Dysplasias Gene Panel Discover Dysplasias tests 109 genes associated with skeletal dysplasias. This list is gathered from various sources, is not designed to be comprehensive, and is provided for reference only. This list is not medical advice and should not be used to make any diagnosis. Refer to lab reports in connection with potential diagnoses. Some genes below may also be associated with non-skeletal dysplasia disorders; those non-skeletal dysplasia disorders are not included on this list. Skeletal Disorders Tested Gene Condition(s) Inheritance ACP5 Spondyloenchondrodysplasia with immune dysregulation (SED) AR ADAMTS10 Weill-Marchesani syndrome (WMS) AR AGPS Rhizomelic chondrodysplasia punctata type 3 (RCDP) AR ALPL Hypophosphatasia AD/AR ANKH Craniometaphyseal dysplasia (CMD) AD Mucopolysaccharidosis type VI (MPS VI), also known as Maroteaux-Lamy ARSB syndrome AR ARSE Chondrodysplasia punctata XLR Spondyloepimetaphyseal dysplasia with joint laxity type 1 (SEMDJL1) B3GALT6 Ehlers-Danlos syndrome progeroid type 2 (EDSP2) AR Multiple joint dislocations, short stature and craniofacial dysmorphism with B3GAT3 or without congenital heart defects (JDSCD) AR Spondyloepimetaphyseal dysplasia (SEMD) Thoracic aortic aneurysm and dissection (TADD), with or without additional BGN features, also known as Meester-Loeys syndrome XL Short stature, facial dysmorphism, and skeletal anomalies with or without BMP2 cardiac anomalies AD Acromesomelic dysplasia AR Brachydactyly type A2 AD BMPR1B Brachydactyly type A1 AD Desbuquois dysplasia CANT1 Multiple epiphyseal dysplasia (MED) AR CDC45 Meier-Gorlin syndrome AR This list is gathered from various sources, is not designed to be comprehensive, and is provided for reference only. This list is not medical advice and should not be used to make any diagnosis. -
Downloaded from Here
bioRxiv preprint doi: https://doi.org/10.1101/017566; this version posted November 19, 2015. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 1 Testing for ancient selection using cross-population allele 2 frequency differentiation 1;∗ 3 Fernando Racimo 4 1 Department of Integrative Biology, University of California, Berkeley, CA, USA 5 ∗ E-mail: [email protected] 6 1 Abstract 7 A powerful way to detect selection in a population is by modeling local allele frequency changes in a 8 particular region of the genome under scenarios of selection and neutrality, and finding which model is 9 most compatible with the data. Chen et al. [2010] developed a composite likelihood method called XP- 10 CLR that uses an outgroup population to detect departures from neutrality which could be compatible 11 with hard or soft sweeps, at linked sites near a beneficial allele. However, this method is most sensitive 12 to recent selection and may miss selective events that happened a long time ago. To overcome this, 13 we developed an extension of XP-CLR that jointly models the behavior of a selected allele in a three- 14 population tree. Our method - called 3P-CLR - outperforms XP-CLR when testing for selection that 15 occurred before two populations split from each other, and can distinguish between those events and 16 events that occurred specifically in each of the populations after the split. -
Clinica Chimica Acta 436 (2014) 112–120
Clinica Chimica Acta 436 (2014) 112–120 Contents lists available at ScienceDirect Clinica Chimica Acta journal homepage: www.elsevier.com/locate/clinchim Molecular characteristics of patients with glycosaminoglycan storage disorders in Russia Dimitry A. Chistiakov a,b,⁎,KirillV.Savost'anovb, Lyudmila M. Kuzenkova c, Anait K. Gevorkyan d, Alexander A. Pushkov b,AlexeyG.Nikitinb, Alexander V. Pakhomov b,NatoD.Vashakmadzec, Natalia V. Zhurkova b, Tatiana V. Podkletnova c, Nikolai A. Mayansky e, Leila S. Namazova-Baranova d, Alexander A. Baranov f a Department of Medical Nanobiotechnology, Pirogov Russian State Medical University, 117997 Moscow, Russia b Department of Molecular Genetic Diagnostics, Division of Laboratory Medicine, Institute of Pediatrics, Research Center for Children's Health, 119991 Moscow, Russia c Department of Psychoneurology and Psychosomatic Pathology, Institute of Pediatrics, Research Center for Children's Health, 119991 Moscow, Russia d Institute of Preventive Pediatrics and Rehabilitation, Research Center for Children's Health, 119991 Moscow, Russia e Department of Experimental Immunology and Virology, Division of Laboratory Medicine, Institute of Pediatrics, Research Center for Children's Health, 119991 Moscow, Russia f Research Center for Children's Health, 119991 Moscow, Russia article info abstract Article history: Background: The mucopolysaccharidoses (MPSs) are rare genetic disorders caused by mutations in lysosomal Received 3 May 2014 enzymes involved in the degradation of glycosaminoglycans (GAGs). In this study, we analyzed a total of 48 Received in revised form 16 May 2014 patients including MPSI (n = 6), MPSII (n = 18), MPSIIIA (n = 11), MPSIVA (n = 3), and MPSVI (n = 10). Accepted 18 May 2014 Methods: In MPS patients, urinary GAGs were colorimetrically assayed.