Genetic Engineering and Biotechnology
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Recombinant DNA and Elements Utilizing Recombinant DNA Such As Plasmids and Viral Vectors, and the Application of Recombinant DNA Techniques in Molecular Biology
Fact Sheet Describing Recombinant DNA and Elements Utilizing Recombinant DNA Such as Plasmids and Viral Vectors, and the Application of Recombinant DNA Techniques in Molecular Biology Compiled and/or written by Amy B. Vento and David R. Gillum Office of Environmental Health and Safety University of New Hampshire June 3, 2002 Introduction Recombinant DNA (rDNA) has various definitions, ranging from very simple to strangely complex. The following are three examples of how recombinant DNA is defined: 1. A DNA molecule containing DNA originating from two or more sources. 2. DNA that has been artificially created. It is DNA from two or more sources that is incorporated into a single recombinant molecule. 3. According to the NIH guidelines, recombinant DNA are molecules constructed outside of living cells by joining natural or synthetic DNA segments to DNA molecules that can replicate in a living cell, or molecules that result from their replication. Description of rDNA Recombinant DNA, also known as in vitro recombination, is a technique involved in creating and purifying desired genes. Molecular cloning (i.e. gene cloning) involves creating recombinant DNA and introducing it into a host cell to be replicated. One of the basic strategies of molecular cloning is to move desired genes from a large, complex genome to a small, simple one. The process of in vitro recombination makes it possible to cut different strands of DNA, in vitro (outside the cell), with a restriction enzyme and join the DNA molecules together via complementary base pairing. Techniques Some of the molecular biology techniques utilized during recombinant DNA include: 1. -
Cloning of Gene Coding Glyceraldehyde-3-Phosphate Dehydrogenase Using Puc18 Vector
Available online a t www.pelagiaresearchlibrary.com Pelagia Research Library European Journal of Experimental Biology, 2015, 5(3):52-57 ISSN: 2248 –9215 CODEN (USA): EJEBAU Cloning of gene coding glyceraldehyde-3-phosphate dehydrogenase using puc18 vector Manoj Kumar Dooda, Akhilesh Kushwaha *, Aquib Hasan and Manish Kushwaha Institute of Transgene Life Sciences, Lucknow (U.P), India _____________________________________________________________________________________________ ABSTRACT The term recombinant DNA technology, DNA cloning, molecular cloning, or gene cloning all refers to the same process. Gene cloning is a set of experimental methods in molecular biology and useful in many areas of research and for biomedical applications. It is the production of exact copies (clones) of a particular gene or DNA sequence using genetic engineering techniques. cDNA is synthesized by using template RNA isolated from blood sample (human). GAPDH (Glyceraldehyde 3-phosphate dehydrogenase) is one of the most commonly used housekeeping genes used in comparisons of gene expression data. Amplify the gene (GAPDH) using primer forward and reverse with the sequence of 5’-TGATGACATCAAGAAGGTGGTGAA-3’ and 5’-TCCTTGGAGGCCATGTGGGCCAT- 3’.pUC18 high copy cloning vector for replication in E. coli, suitable for “blue-white screening” technique and cleaved with the help of SmaI restriction enzyme. Modern cloning vectors include selectable markers (most frequently antibiotic resistant marker) that allow only cells in which the vector but necessarily the insert has been transfected to grow. Additionally the cloning vectors may contain color selection markers which provide blue/white screening (i.e. alpha complementation) on X- Gal and IPTG containing medium. Keywords: RNA isolation; TRIzol method; Gene cloning; Blue/white screening; Agarose gel electrophoresis. -
The Bio Revolution: Innovations Transforming and Our Societies, Economies, Lives
The Bio Revolution: Innovations transforming economies, societies, and our lives economies, societies, our and transforming Innovations Revolution: Bio The Executive summary The Bio Revolution Innovations transforming economies, societies, and our lives May 2020 McKinsey Global Institute Since its founding in 1990, the McKinsey Global Institute (MGI) has sought to develop a deeper understanding of the evolving global economy. As the business and economics research arm of McKinsey & Company, MGI aims to help leaders in the commercial, public, and social sectors understand trends and forces shaping the global economy. MGI research combines the disciplines of economics and management, employing the analytical tools of economics with the insights of business leaders. Our “micro-to-macro” methodology examines microeconomic industry trends to better understand the broad macroeconomic forces affecting business strategy and public policy. MGI’s in-depth reports have covered more than 20 countries and 30 industries. Current research focuses on six themes: productivity and growth, natural resources, labor markets, the evolution of global financial markets, the economic impact of technology and innovation, and urbanization. Recent reports have assessed the digital economy, the impact of AI and automation on employment, physical climate risk, income inequal ity, the productivity puzzle, the economic benefits of tackling gender inequality, a new era of global competition, Chinese innovation, and digital and financial globalization. MGI is led by three McKinsey & Company senior partners: co-chairs James Manyika and Sven Smit, and director Jonathan Woetzel. Michael Chui, Susan Lund, Anu Madgavkar, Jan Mischke, Sree Ramaswamy, Jaana Remes, Jeongmin Seong, and Tilman Tacke are MGI partners, and Mekala Krishnan is an MGI senior fellow. -
Genome As a Tool of Genetic Engineering: Application in Plant and Plant Derived Medicine
International Journal of Biotech Trends and Technology (IJBTT) – Volume 8 Issue 1- Jan - March 2018 Genome as a Tool of Genetic Engineering: Application in Plant and Plant Derived Medicine A.B.M. Sharif Hossain1,2 Musamma M. Uddin2 1Department of Biology, Faculty of Science, Hail University, Hail, KSA 2Biotechnology Program, Institute of Biological Sciences, Faculty of Science, University of Malaya, 50603, Kuala Lumpur, Malaysia introduce point mutations. Genetically modified Abstract organism (GMO) is considered as an organism that The study was conducted from different is generated through genetic engineering. The first modern research data to review the innovative GMOs were bacteria in 1973, GM mice were generated in 1974 [4]. Insulin-producing bacteria latest technology in the genomics and its were commercialized in 1982 and genetically application in Agriculture, biomedicinae and modified food has been sold since 1994. Glofish, the plant derived medicine. Application of genome first GMO designed as a pet, was first sold in the in genetic engineering and molecular United States December in 2003 [4]. Genetic biotechnology have been exhibited well. engineering biotechnology has been applied in Genetically Modified Organism (GMO), numerous fields including agriculture, industrial Agrobacterium mediated recombination (T- biotechnology, and medicine. Enzymes used in DNA) and genetic engineering using molecular laundry detergent and medicines such as insulin and Biotechnology in plant, medicine and human growth hormone are now manufactured in biomedicine have been highlighted from GM cells, experimental GM cell lines and GM animals such as mice or zebra fish are being used for technology based different research data. research purposes, and genetically modified Moreover, molecular biotechnology in crops have been commercialized [4]. -
Review of the Current State of Genetic Testing - a Living Resource
Review of the Current State of Genetic Testing - A Living Resource Prepared by Liza Gershony, DVM, PhD and Anita Oberbauer, PhD of the University of California, Davis Editorial input by Leigh Anne Clark, PhD of Clemson University July, 2020 Contents Introduction .................................................................................................................................................. 1 I. The Basics ......................................................................................................................................... 2 II. Modes of Inheritance ....................................................................................................................... 7 a. Mendelian Inheritance and Punnett Squares ................................................................................. 7 b. Non-Mendelian Inheritance ........................................................................................................... 10 III. Genetic Selection and Populations ................................................................................................ 13 IV. Dog Breeds as Populations ............................................................................................................. 15 V. Canine Genetic Tests ...................................................................................................................... 16 a. Direct and Indirect Tests ................................................................................................................ 17 b. Single -
DNA Testing and the Next Generation of Environmental Forensics
DNA Testing and the Next Generation of Environmental Forensics Andrew M. Deines, Ph.D.; William L. Goodfellow, Jr., BCES; Karen J. Murray, Ph.D. Historically, assessing species presence has relied on a time consuming and labor intensive process. Advances in genetic testing techniques provide a faster, cheaper, and more accurate taxonomic assessment, which can be used to answer a range of environmental and ecological questions. The rapid advancements and substantial reduction in cost for DNA sequencing in the field of human genomics has created an opportunity to use the same technologies and specific modifications for broad use in environmental and ecological studies – from baseline studies to risk and impact assessments. In the last two decades the development of genetic sequencing technology and the expansion of the field of genomics (analysis of an organism’s entire genetic code) has unlocked information hidden within cells, transforming the world of medical diagnostics and providing avenues to additional scientific discovery. In the field of human genetics, researchers are nearing the goal of providing a human genome for $1000 using “next-generation” sequencing— what scientists call new high-throughput and high resolution genetic tools. These same DNA sequencing methods are being applied to many aspects of environmental and ecological study. DNA sequencing technology reported in the academic literature has addressed important evolutionary and ecological questions, leading to the development of new fields of study such as environmental genetics and conservation genomics. The development of new techniques almost monthly creates a wealth of opportunities for environmental assessments. Rapid DNA sequencing allows for the exploration of the genetic make-up of individual animals, populations, and assemblages of species in astonishing detail. -
The Effect of Increasing Plasmid Size on Transformation Efficiency in Escherichia Coli
Journal of Experimental Microbiology and Immunology (JEMI) Vol. 2:207-223 Copyright April 2002, M&I UBC The Effect of Increasing Plasmid Size on Transformation Efficiency in Escherichia coli VICKY CHAN, LISA F. DREOLINI, KERRY A. FLINTOFF, SONJA J. LLOYD, AND ANDREA A. MATTENLEY Department of Microbiology and Immunology, UBC Based on the observation that the transformation of Escherchia coli was more efficient with pUC19 than with the larger plasmid pBR322, we hypothesized that transformation frequency is somehow affected by size. To test this hypothesis, we attempted to insert a 1.7kb lambda NdeI fragment into pUC19 to generate a plasmid (pHEL) of the same size as pBR322. The two plasmids of equal size were then to be used to transform E. coli in order to compare transformation efficiencies. After two rounds of cloning, we were unable to generate pHEL. In lieu of using pHEL and pBR322, E. coli were transformed with previously prepared plasmids of varying sizes: pUC8 (2.6 kb), pUC8 0-690 (4.3 kb), and pUC8 0-690::pKT210 (16.1 kb). The results of these transformations indicate that increasing plasmid size correlates with a decrease in transformation efficiency. Transformation is an important technique in molecular cloning for transferring genetic material to bacteria. It can be done by either heat shock or electroporation. The former involves the preparation of competent cells, incubation of the cells with DNA at 0oC and the completion of DNA uptake by heat pulse. Competent cells are capable of taking up DNA. They can be prepared by cold treatment with calcium chloride. -
Guide to Biotechnology 2008
guide to biotechnology 2008 research & development health bioethics innovate industrial & environmental food & agriculture biodefense Biotechnology Industry Organization 1201 Maryland Avenue, SW imagine Suite 900 Washington, DC 20024 intellectual property 202.962.9200 (phone) 202.488.6301 (fax) bio.org inform bio.org The Guide to Biotechnology is compiled by the Biotechnology Industry Organization (BIO) Editors Roxanna Guilford-Blake Debbie Strickland Contributors BIO Staff table of Contents Biotechnology: A Collection of Technologies 1 Regenerative Medicine ................................................. 36 What Is Biotechnology? .................................................. 1 Vaccines ....................................................................... 37 Cells and Biological Molecules ........................................ 1 Plant-Made Pharmaceuticals ........................................ 37 Therapeutic Development Overview .............................. 38 Biotechnology Industry Facts 2 Market Capitalization, 1994–2006 .................................. 3 Agricultural Production Applications 41 U.S. Biotech Industry Statistics: 1995–2006 ................... 3 Crop Biotechnology ...................................................... 41 U.S. Public Companies by Region, 2006 ........................ 4 Forest Biotechnology .................................................... 44 Total Financing, 1998–2007 (in billions of U.S. dollars) .... 4 Animal Biotechnology ................................................... 45 Biotech -
Molecular Cloning: a Laboratory Manual, 4Th Edition
This is a free sample of content from Molecular Cloning: A Laboratory Manual, 4th edition. Click here for more information or to buy the book. VOLUME 1 Molecular Cloning A LABORATORY MANUAL FOURTH EDITION © 2012 by Cold Spring Harbor Laboratory Press This is a free sample of content from Molecular Cloning: A Laboratory Manual, 4th edition. Click here for more information or to buy the book. OTHER TITLES FROM CSHL PRESS LABORATORY MANUALS Antibodies: A Laboratory Manual Imaging: A Laboratory Manual Live Cell Imaging: A Laboratory Manual, 2nd Edition Manipulating the Mouse Embryo: A Laboratory Manual, 3rd Edition RNA: A Laboratory Manual HANDBOOKS Lab Math: A Handbook of Measurements, Calculations, and Other Quantitative Skills for Use at the Bench Lab Ref, Volume 1: A Handbook of Recipes, Reagents, and Other Reference Tools for Use at the Bench Lab Ref, Volume 2: A Handbook of Recipes, Reagents, and Other Reference Tools for Use at the Bench Statistics at the Bench: A Step-by-Step Handbook for Biologists WEBSITES Molecular Cloning, A Laboratory Manual, 4th Edition, www.molecularcloning.org Cold Spring Harbor Protocols, www.cshprotocols.org © 2012 by Cold Spring Harbor Laboratory Press This is a free sample of content from Molecular Cloning: A Laboratory Manual, 4th edition. Click here for more information or to buy the book. VOLUME 1 Molecular Cloning A LABORATORY MANUAL FOURTH EDITION Michael R. Green Howard Hughes Medical Institute Programs in Gene Function and Expression and in Molecular Medicine University of Massachusetts Medical School Joseph Sambrook Peter MacCallum Cancer Centre and the Peter MacCallum Department of Oncology The University of Melbourne, Australia COLD SPRING HARBOR LABORATORY PRESS Cold Spring Harbor, New York † www.cshlpress.org © 2012 by Cold Spring Harbor Laboratory Press This is a free sample of content from Molecular Cloning: A Laboratory Manual, 4th edition. -
The Landscape of Non-Viral Gene Augmentation Strategies for Inherited Retinal Diseases
International Journal of Molecular Sciences Review The Landscape of Non-Viral Gene Augmentation Strategies for Inherited Retinal Diseases Lyes Toualbi 1,2, Maria Toms 1,2 and Mariya Moosajee 1,2,3,4,* 1 UCL Institute of Ophthalmology, London EC1V 9EL, UK; [email protected] (L.T.); [email protected] (M.T.) 2 The Francis Crick Institute, London NW1 1AT, UK 3 Moorfields Eye Hospital NHS Foundation Trust, London EC1V 2PD, UK 4 Great Ormond Street Hospital for Children NHS Found Trust, London WC1N 3JH, UK * Correspondence: [email protected]; Tel.: +44-207-608-6971 Abstract: Inherited retinal diseases (IRDs) are a heterogeneous group of disorders causing progres- sive loss of vision, affecting approximately one in 1000 people worldwide. Gene augmentation therapy, which typically involves using adeno-associated viral vectors for delivery of healthy gene copies to affected tissues, has shown great promise as a strategy for the treatment of IRDs. How- ever, the use of viruses is associated with several limitations, including harmful immune responses, genome integration, and limited gene carrying capacity. Here, we review the advances in non-viral gene augmentation strategies, such as the use of plasmids with minimal bacterial backbones and scaffold/matrix attachment region (S/MAR) sequences, that have the capability to overcome these weaknesses by accommodating genes of any size and maintaining episomal transgene expression with a lower risk of eliciting an immune response. Low retinal transfection rates remain a limita- tion, but various strategies, including coupling the DNA with different types of chemical vehicles (nanoparticles) and the use of electrical methods such as iontophoresis and electrotransfection to aid Citation: Toualbi, L.; Toms, M.; Moosajee, M. -
View the Lower Court’S Findings Concerning Infringement De Novo
Nos. 04-1532, 05-1120/-1121 In the United States Court of Appeals for the Federal Circuit MONSANTO COMPANY, Plaintiff/Appellee, v. MITCHELL SCRUGGS, EDDIE SCRUGGS, SCRUGGS FARM & SUPPLIES, LLC; SCRUGGS FARM JOINT VENTURE; HES FARMS, INC.; MES FARMS, INC.; and MHS FARMS, INC., Defendants/Appellants. Appeals from the United States District Court for the Northern District of Mississippi, Case No. 00-cv-161, Judge W. Allen Pepper, Jr. BRIEF OF AMICUS CURIAE CENTER FOR FOOD SAFETY Joseph Mendelson III* Andrew Kimbrell Center for Food Safety 660 Pennsylvania Ave., SE Suite 302 Washington, DC 20003 (202) 547-9359 Attorneys for Amicus Curiae *Counsel of Record May 9, 2005 TABLE OF CONTENTS CERTIFICATE OF INTEREST .......................................... TABLE OF CONTENTS ............................................... i TABLE OF AUTHORITIES ........................................... ii STATEMENT OF INTEREST OF AMICUS CURIAE ..................... 1 ARGUMENT ........................................................ 3 I. Introduction .................................................. 3 II. Farmers Do Not Infringe the Monsanto Patents. ......................................................... 9 A. Limited Scope of Monsanto’s Patent Claims. ................................................... 10 B. American Farmers Do Not Plant Chimeric Genes, Promoters or Plant Cells. ................................................... 14 III. Extension of Monsanto’s Narrow Patent Claims to Seeds and Plants Will Have Significant Impacts on Farmers and Consumers. -
Molecular Genetic Testing Introduction, Evolution, and Future
Scholars in HeAlth Research Program Molecular Genetic Testing Introduction, Evolution, and Future Rami Mahfouz MD, MPH Why Study Genetics? Statistics Spontaneous Miscarriages A chromosome abnormality is present in at least 50% of all first-trimester pregnancy loss Newborn Infants 2% of all neonates have a single gene disorder or a chromosome abnormality Childhood Genetic disorders account for 50% of all blindness, deafness, and mental retardation Adult Life At least 10% of common cancers (such as breast and colon) have a genetic etiology Genetics and Medicine • Cancer • Diabetes • Cardiovascular Disease (Hypertension, Myocardial infarction, etc..) • Psychiatric disorders (Schizophrenia, ..) Terms to familiarize with GENE - The basic hereditary unit. It’s a DNA sequence required for production of a functional product. ALLELE - One of the alternate versions of a gene present in a population. LOCUS - Literally a “place” on a chromosome or DNA molecule. Usually refers to the location of the gene. GENETICS – The study of genes. GENOMICS – The study of genes interaction. GENOTYPE - An individual’s genetic constitution. PHENOTYPE - Observable expression of genotype. Human Genome Project Estimated number of genes ~25,000 We humans are 99.9% identical at the DNA sequence level Only 1 to 1.5% of the genome encodes proteins DNA contains information equal to some 600,000 printed pages of 500 words each!!! (a library of about 1,000 books) DNA Structure Source: cnx.org/content/m12382/latest Features of DNA structure Storing and coding Semi-conservative