Algal Bloom Fact Sheet
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The 2014 Golden Gate National Parks Bioblitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event
National Park Service U.S. Department of the Interior Natural Resource Stewardship and Science The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 ON THIS PAGE Photograph of BioBlitz participants conducting data entry into iNaturalist. Photograph courtesy of the National Park Service. ON THE COVER Photograph of BioBlitz participants collecting aquatic species data in the Presidio of San Francisco. Photograph courtesy of National Park Service. The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 Elizabeth Edson1, Michelle O’Herron1, Alison Forrestel2, Daniel George3 1Golden Gate Parks Conservancy Building 201 Fort Mason San Francisco, CA 94129 2National Park Service. Golden Gate National Recreation Area Fort Cronkhite, Bldg. 1061 Sausalito, CA 94965 3National Park Service. San Francisco Bay Area Network Inventory & Monitoring Program Manager Fort Cronkhite, Bldg. 1063 Sausalito, CA 94965 March 2016 U.S. Department of the Interior National Park Service Natural Resource Stewardship and Science Fort Collins, Colorado The National Park Service, Natural Resource Stewardship and Science office in Fort Collins, Colorado, publishes a range of reports that address natural resource topics. These reports are of interest and applicability to a broad audience in the National Park Service and others in natural resource management, including scientists, conservation and environmental constituencies, and the public. The Natural Resource Report Series is used to disseminate comprehensive information and analysis about natural resources and related topics concerning lands managed by the National Park Service. -
The Diatoms Big Significance of Tiny Glass Houses
GENERAL ¨ ARTICLE The Diatoms Big Significance of Tiny Glass Houses Aditi Kale and Balasubramanian Karthick Diatoms are unique microscopic algae having intricate cell walls made up of silica. They are the major phytoplankton in aquatic ecosystems and account for 20–25% of the oxygen release and carbon fixation in the world. Their most charac- teristic features are mechanisms they have evolved to utilize silica. Due to their distinctive adaptations and ecology, they (left) Aditi Kale is a PhD student with the are used in various fields like biomonitoring, paleoecology, Biodiversity and nanotechnology and forensics. Paleobiology group of Agharkar Research Introduction Institute. She is studying the biogeography of Diatoms (Class: Bacillariophyceae) are unique microscopic al- freshwater diatoms in gae containing silica and having distinct geometrical shapes. Western Ghats for her They are unicellular, eukaryotic and photosynthetic organisms. thesis. Their cell size ranges between 5 µm–0.5 mm. They occur in wet (right) Balasubramanian or moist places where photosynthesis is possible. Diatoms are Karthick is Scientist with Biodiversity and either planktonic (free-floating) or benthic (attached to a substra- Paleobiology group of tum) in Nature (Figure 1). The individuals are solitary or some- Agharkar Research times form colonies. Diatoms are mostly non-motile; however, Institute. His interests some benthic diatoms have a specialized raphe system1 that include diatom taxonomy and ecology, microbial secretes mucilage to attach or glide along a surface. They are also biogeography,andaquatic known to form biofilms, i. e., layers of tightly attached cells of ecology. microorganisms. Biofilms are formed on a solid surface and are often surrounded by extra-cellular fluids. -
Diatoms Shape the Biogeography of Heterotrophic Prokaryotes in Early Spring in the Southern Ocean
Diatoms shape the biogeography of heterotrophic prokaryotes in early spring in the Southern Ocean Yan Liu, Pavla Debeljak, Mathieu Rembauville, Stéphane Blain, Ingrid Obernosterer To cite this version: Yan Liu, Pavla Debeljak, Mathieu Rembauville, Stéphane Blain, Ingrid Obernosterer. Diatoms shape the biogeography of heterotrophic prokaryotes in early spring in the Southern Ocean. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2019, 21 (4), pp.1452-1465. 10.1111/1462-2920.14579. hal-02383818 HAL Id: hal-02383818 https://hal.archives-ouvertes.fr/hal-02383818 Submitted on 28 Nov 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Diatoms shape the biogeography of heterotrophic prokaryotes in early spring in the Southern Ocean 5 Yan Liu1, Pavla Debeljak1,2, Mathieu Rembauville1, Stéphane Blain1, Ingrid Obernosterer1* 1 Sorbonne Université, CNRS, Laboratoire d'Océanographie Microbienne, LOMIC, F-66650 10 Banyuls-sur-Mer, France 2 Department of Limnology and Bio-Oceanography, University of Vienna, A-1090 Vienna, Austria -
A New Type of Plankton Food Web Functioning in Coastal Waters Revealed by Coupling Monte Carlo Markov Chain Linear Inverse Metho
A new type of plankton food web functioning in coastal waters revealed by coupling Monte Carlo Markov Chain Linear Inverse method and Ecological Network Analysis Marouan Meddeb, Nathalie Niquil, Boutheina Grami, Kaouther Mejri, Matilda Haraldsson, Aurélie Chaalali, Olivier Pringault, Asma Sakka Hlaili To cite this version: Marouan Meddeb, Nathalie Niquil, Boutheina Grami, Kaouther Mejri, Matilda Haraldsson, et al.. A new type of plankton food web functioning in coastal waters revealed by coupling Monte Carlo Markov Chain Linear Inverse method and Ecological Network Analysis. Ecological Indicators, Elsevier, 2019, 104, pp.67-85. 10.1016/j.ecolind.2019.04.077. hal-02146355 HAL Id: hal-02146355 https://hal.archives-ouvertes.fr/hal-02146355 Submitted on 3 Jun 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. 1 A new type of plankton food web functioning in coastal waters revealed by coupling 2 Monte Carlo Markov Chain Linear Inverse method and Ecological Network Analysis 3 4 5 Marouan Meddeba,b*, Nathalie Niquilc, Boutheïna Gramia,d, Kaouther Mejria,b, Matilda 6 Haraldssonc, Aurélie Chaalalic,e,f, Olivier Pringaultg, Asma Sakka Hlailia,b 7 8 aUniversité de Carthage, Faculté des Sciences de Bizerte, Laboratoire de phytoplanctonologie 9 7021 Zarzouna, Bizerte, Tunisie. -
Macrophyte Communities in the Peel-Harvey Estuary: Historical Trends and Current Patterns in Biomass and Distribution
Macrophyte communities in the Peel-Harvey Estuary: Historical trends and current patterns in biomass and distribution. Submitted by Oliver Krumholz This thesis is presented for the Degree of Honours in Marine Science, School of Veterinary and Life Science, Murdoch University, 2019. Declaration I declare that this thesis is my own account of my research and contains as its main content work which has not been previously submitted for a degree at any tertiary education institution. ------------------------------------------ Oliver Krumholz 20th May 2019 Abstract Estuaries are significant coastal environments and amongst the most productive ecosystems. However, anthropogenic activities have led to widespread degradation of estuaries and loss of ecosystem function. Eutrophication, a major driver for these changes, caused widespread loss of seagrass and significant blooms of macroalgae and phytoplankton. This study determined the spatial and temporal dynamics of macrophyte communities over a forty-year period (1978- 2018) in the Peel- Harvey Estuary, a hydrologically modified eutrophic estuary in south-western Australia. Analyses revealed a progressive decline in macroalgal biomass and an associated increase in seagrass biomass over the examined periods. The seagrass Ruppia became the dominant macrophyte in the system and expanded into previously unvegetated areas in the southern Harvey Estuary. The observed changes in macrophyte community composition were correlated with declining total nitrogen concentrations over time in those regions of the estuary furthest from the rivers. While these effects partly reflect improved water clarity and flushing of nutrients following the opening of an artificial channel to the ocean, they are likely also influenced by changes in river flow patterns caused by climate change. -
Exploring Bacteria Diatom Associations Using Single-Cell
Vol. 72: 73–88, 2014 AQUATIC MICROBIAL ECOLOGY Published online April 4 doi: 10.3354/ame01686 Aquat Microb Ecol FREEREE ACCESSCCESS Exploring bacteria–diatom associations using single-cell whole genome amplification Lydia J. Baker*, Paul F. Kemp Department of Oceanography, University of Hawai’i at Manoa, 1950 East West Road, Center for Microbial Oceanography: Research and Education (C-MORE), Honolulu, Hawai’i 96822, USA ABSTRACT: Diatoms are responsible for a large fraction of oceanic and freshwater biomass pro- duction and are critically important for sequestration of carbon to the deep ocean. As with most surfaces present in aquatic systems, bacteria colonize the exterior of diatom cells, and they inter- act with the diatom and each other. The ecology of diatoms may be better explained by conceptu- alizing them as composite organisms consisting of the host cell and its bacterial associates. Such associations could have collective properties that are not predictable from the properties of the host cell alone. Past studies of these associations have employed culture-based, whole-population methods. In contrast, we examined the composition and variability of bacterial assemblages attached to individual diatoms. Samples were collected in an oligotrophic system (Station ALOHA, 22° 45’ N, 158° 00’ W) at the deep chlorophyll maximum. Forty eukaryotic host cells were isolated by flow cytometry followed by multiple displacement amplification, including 26 Thalassiosira spp., other diatoms, dinoflagellates, coccolithophorids, and flagellates. Bacteria were identified by amplifying, cloning, and sequencing 16S rDNA using primers that select against chloroplast 16S rDNA. Bacterial sequences were recovered from 32 of 40 host cells, and from parallel samples of the free-living and particle-associated bacteria. -
Phytoplankton As Key Mediators of the Biological Carbon Pump: Their Responses to a Changing Climate
sustainability Review Phytoplankton as Key Mediators of the Biological Carbon Pump: Their Responses to a Changing Climate Samarpita Basu * ID and Katherine R. M. Mackey Earth System Science, University of California Irvine, Irvine, CA 92697, USA; [email protected] * Correspondence: [email protected] Received: 7 January 2018; Accepted: 12 March 2018; Published: 19 March 2018 Abstract: The world’s oceans are a major sink for atmospheric carbon dioxide (CO2). The biological carbon pump plays a vital role in the net transfer of CO2 from the atmosphere to the oceans and then to the sediments, subsequently maintaining atmospheric CO2 at significantly lower levels than would be the case if it did not exist. The efficiency of the biological pump is a function of phytoplankton physiology and community structure, which are in turn governed by the physical and chemical conditions of the ocean. However, only a few studies have focused on the importance of phytoplankton community structure to the biological pump. Because global change is expected to influence carbon and nutrient availability, temperature and light (via stratification), an improved understanding of how phytoplankton community size structure will respond in the future is required to gain insight into the biological pump and the ability of the ocean to act as a long-term sink for atmospheric CO2. This review article aims to explore the potential impacts of predicted changes in global temperature and the carbonate system on phytoplankton cell size, species and elemental composition, so as to shed light on the ability of the biological pump to sequester carbon in the future ocean. -
Save the Reef
Save the Reef A member group of Lock the Gate Alliance www.savethereef.net.au Committee Secretary Senate Standing Committees on Environment and Communications PO Box 6100 Parliament House Canberra ACT 2600 Phone: +61 2 6277 3526 Fax: +61 2 6277 5818 [email protected] Submission to the Senate Inquiry on The adequacy of the Australian and Queensland Governments’ efforts to stop the rapid decline of the Great Barrier Reef, including but not limited to: Points a–k. Save the Reef would like to thank this committee for the opportunity to make a submission and would also like to speak further if there is an opportunity at any public hearings. The Great Barrier Reef is Australia’s greatest natural asset. It is a tourism mecca, a 6 billion dollar economic boon as well as a scientific wonderland. It is a World Heritage Listed property and an acknowledged world wonder. The Great Barrier Reef is part of Australia’s very identity. We are failing to protect the Great Barrier Reef. The efforts to stop the rapid decline of the Great Barrier Reef are grossly inadequate. It demonstrates that our current system for protecting the environment is broken. Environmental impact statements, conditions, offsets, regulations, enforcement and even the EPBC act, processes meant to protect the environment are being subverted and the impact is apparent. The holes in the “Swiss Cheese” are lining up and have allowed and are continuing to allow further destruction of the Great Barrier Reef when it needs our protection the most. The recent developments in Gladstone are a clear demonstration of the failure of our systems. -
Fertilizing the Ocean with Iron Is This a Viable Way to Help Reduce Carbon Dioxide Levels in the Atmosphere?
380 Fertilizing the Ocean with Iron Is this a viable way to help reduce carbon dioxide levels in the atmosphere? 360 ive me half a tanker of iron, and I’ll give you an ice Twenty years on, Martin’s line is still viewed alternately age” may rank as the catchiest line ever uttered by a as a boast or a quip—an opportunity too good to pass up or a biogeochemist.“G The man responsible was the late John Martin, misguided remedy doomed to backfire. Yet over the same pe- former director of the Moss Landing Marine Laboratory, who riod, unrelenting increases in carbon emissions and mount- discovered that sprinkling iron dust in the right ocean waters ing evidence of climate change have taken the debate beyond could trigger plankton blooms the size of a small city. In turn, academic circles and into the free market. the billions of cells produced might absorb enough heat-trap- Today, policymakers, investors, economists, environ- ping carbon dioxide to cool the Earth’s warming atmosphere. mentalists, and lawyers are taking notice of the idea. A few Never mind that Martin companies are planning new, was only half serious when larger experiments. The ab- 340 he made the remark (in his Ocean Iron Fertilization sence of clear regulations for “best Dr. Strangelove accent,” either conducting experiments he later recalled) at an infor- An argument for: Faced with the huge at sea or trading the results mal seminar at Woods Hole consequences of climate change, iron’s in “carbon offset” markets Oceanographic Institution outsized ability to put carbon into the oceans complicates the picture. -
Biological Oceanography - Legendre, Louis and Rassoulzadegan, Fereidoun
OCEANOGRAPHY – Vol.II - Biological Oceanography - Legendre, Louis and Rassoulzadegan, Fereidoun BIOLOGICAL OCEANOGRAPHY Legendre, Louis and Rassoulzadegan, Fereidoun Laboratoire d'Océanographie de Villefranche, France. Keywords: Algae, allochthonous nutrient, aphotic zone, autochthonous nutrient, Auxotrophs, bacteria, bacterioplankton, benthos, carbon dioxide, carnivory, chelator, chemoautotrophs, ciliates, coastal eutrophication, coccolithophores, convection, crustaceans, cyanobacteria, detritus, diatoms, dinoflagellates, disphotic zone, dissolved organic carbon (DOC), dissolved organic matter (DOM), ecosystem, eukaryotes, euphotic zone, eutrophic, excretion, exoenzymes, exudation, fecal pellet, femtoplankton, fish, fish lavae, flagellates, food web, foraminifers, fungi, harmful algal blooms (HABs), herbivorous food web, herbivory, heterotrophs, holoplankton, ichthyoplankton, irradiance, labile, large planktonic microphages, lysis, macroplankton, marine snow, megaplankton, meroplankton, mesoplankton, metazoan, metazooplankton, microbial food web, microbial loop, microheterotrophs, microplankton, mixotrophs, mollusks, multivorous food web, mutualism, mycoplankton, nanoplankton, nekton, net community production (NCP), neuston, new production, nutrient limitation, nutrient (macro-, micro-, inorganic, organic), oligotrophic, omnivory, osmotrophs, particulate organic carbon (POC), particulate organic matter (POM), pelagic, phagocytosis, phagotrophs, photoautotorphs, photosynthesis, phytoplankton, phytoplankton bloom, picoplankton, plankton, -
Sample Chapter Algal Blooms
ALGAL BLOOMS 7 Observations and Remote Sensing. http://dx.doi.org/10.1109/ energy and material transport through the food web, and JSTARS.2013.2265255. they also play an important role in the vertical flux of Pack, R. T., Brooks, V., Young, J., Vilaca, N., Vatslid, S., Rindle, P., material out of the surface waters. These blooms are Kurz, S., Parrish, C. E., Craig, R., and Smith, P. W., 2012. An “ ” overview of ALS technology. In Renslow, M. S. (ed.), Manual distinguished from those that are deemed harmful. of Airborne Topographic Lidar. Bethesda: ASPRS Press. Algae form harmful algal blooms, or HABs, when either Sithole, G., and Vosselman, G., 2004. Experimental comparison of they accumulate in massive amounts that alone cause filter algorithms for bare-Earth extraction from airborne laser harm to the ecosystem or the composition of the algal scanning point clouds. ISPRS Journal of Photogrammetry and community shifts to species that make compounds Remote Sensing, 59,85–101. (including toxins) that disrupt the normal food web or to Shan, J., and Toth, C., 2009. Topographic Laser Ranging and Scanning: Principles and Processes. Boca Raton: CRC Press. species that can harm human consumers (Glibert and Slatton, K. C., Carter, W. E., Shrestha, R. L., and Dietrich, W., 2007. Pitcher, 2001). HABs are a broad and pervasive problem, Airborne laser swath mapping: achieving the resolution and affecting estuaries, coasts, and freshwaters throughout the accuracy required for geosurficial research. Geophysical world, with effects on ecosystems and human health, and Research Letters, 34,1–5. on economies, when these events occur. This entry Wehr, A., and Lohr, U., 1999. -
Stromatolites
Stromatolites What is a stromatolite? A stromatolite (literally, ‘layered rock’) is a solid structure created by single-celled microbes called cyanobacteria (blue-green algae). The cyanobacteria form colonies and trap sediment with their sticky surface coatings. The trapped sediment reacts to calcium carbonate in the water to form limestone. These limestone deposits build up very slowly – it can take a stromatolite 100 years to grow 5 cm. A 1 m-high stromatolite might be 2,000 years old! Where are they found? Shark Bay’s stromatolites are found around the shallows of Hamelin Pool , located in the southern part of the eastern bay. Between 4,000 to 6,000 years ago a massive seagrass bank called the Fauré Sill began to block tidal flow into Hamelin Pool, causing the water to become extremely concentrated, or hypersaline. The water in Hamelin Pool is twice as salty as water in the open ocean! Animals that would normally graze on algae, such as chitons and snails, cannot survive in these conditions. Around 3,000 years ago cyanobacteria started flourishing, forming stromatolites much as they did billions of years ago. More than 50 species of cyanobacteria live in Hamelin Pool. What do they look like? Stromatolites look like a cross between a cauliflower and a rock. However, unlike rocks they are actually alive – each stromatolite has a top surface layer teeming with living, active cyanobacteria. At least 3,000 million cyanobacteria can fit in 1 m2! Because cyanobacteria are plants, they photosynthesise their energy from the sun. A by-product of photosynthesis is oxygen, and if you look very carefully you may see the stromatolites gently ‘fizzing’ as tiny bubbles of oxygen are released by the cyanobacteria into the water.