Marine Habitat Classification for Britain and Ireland. Version 04.05
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National Monitoring Program for Biodiversity and Non-Indigenous Species in Egypt
UNITED NATIONS ENVIRONMENT PROGRAM MEDITERRANEAN ACTION PLAN REGIONAL ACTIVITY CENTRE FOR SPECIALLY PROTECTED AREAS National monitoring program for biodiversity and non-indigenous species in Egypt PROF. MOUSTAFA M. FOUDA April 2017 1 Study required and financed by: Regional Activity Centre for Specially Protected Areas Boulevard du Leader Yasser Arafat BP 337 1080 Tunis Cedex – Tunisie Responsible of the study: Mehdi Aissi, EcApMEDII Programme officer In charge of the study: Prof. Moustafa M. Fouda Mr. Mohamed Said Abdelwarith Mr. Mahmoud Fawzy Kamel Ministry of Environment, Egyptian Environmental Affairs Agency (EEAA) With the participation of: Name, qualification and original institution of all the participants in the study (field mission or participation of national institutions) 2 TABLE OF CONTENTS page Acknowledgements 4 Preamble 5 Chapter 1: Introduction 9 Chapter 2: Institutional and regulatory aspects 40 Chapter 3: Scientific Aspects 49 Chapter 4: Development of monitoring program 59 Chapter 5: Existing Monitoring Program in Egypt 91 1. Monitoring program for habitat mapping 103 2. Marine MAMMALS monitoring program 109 3. Marine Turtles Monitoring Program 115 4. Monitoring Program for Seabirds 118 5. Non-Indigenous Species Monitoring Program 123 Chapter 6: Implementation / Operational Plan 131 Selected References 133 Annexes 143 3 AKNOWLEGEMENTS We would like to thank RAC/ SPA and EU for providing financial and technical assistances to prepare this monitoring programme. The preparation of this programme was the result of several contacts and interviews with many stakeholders from Government, research institutions, NGOs and fishermen. The author would like to express thanks to all for their support. In addition; we would like to acknowledge all participants who attended the workshop and represented the following institutions: 1. -
Congruence Between Fine-Scale Genetic Breaks and Dispersal
Congruence between fine-scale genetic breaks and dispersal potential in an estuarine seaweed across multiple transition zones Katy Nicastro, Jorge Assis, Ester Álvares Serrão, Gareth A. Pearson, João Neiva, Myriam Valero, Rita Jacinto, Gerardo Zardi To cite this version: Katy Nicastro, Jorge Assis, Ester Álvares Serrão, Gareth A. Pearson, João Neiva, et al.. Congruence between fine-scale genetic breaks and dispersal potential in an estuarine seaweed across multiple tran- sition zones. ICES Journal of Marine Science, Oxford University Press (OUP), 2019. hal-02406672 HAL Id: hal-02406672 https://hal.archives-ouvertes.fr/hal-02406672 Submitted on 12 Dec 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Manuscripts submitted to ICES Journal of Marine Science Congruence between fine-scale genetic breaks and dispersal potentialFor Reviewin an estuarine Onlyseaweed across multiple transition zones. Journal: ICES Journal of Marine Science Manuscript ID ICESJMS-2019-167.R2 Manuscript Types: Original Article Date Submitted by the 04-Sep-2019 Author: Complete List of Authors: Nicastro, Katy; CCMAR Assis, Jorge; CCMAR Serrão, Ester; University of Algarve, CCMAR- Centre of Marine Sciences Pearson, Gareth; CCMAR Neiva, Joao; CCMAR Jacinto, Rita; CCMAR Valero, Myriam; CNRS Zardi, Gerardo; Rhodes University, Dept Zoology and Entomology Keyword: Biogeography, physical modelling, gene flow, Fucus spp. -
Polychaeta: Serpulidae) from Southeastern Australia
AUSTRALIAN MUSEUM SCIENTIFIC PUBLICATIONS Knight-Jones, E. W., P. Knight-Jones and L. C. Llewellyn, 1974. Spirorbinae (Polychaeta: Serpulidae) from southeastern Australia. Notes on their taxonomy, ecology, and distribution. Records of the Australian Museum 29(3): 106–151. [1 May 1974]. doi:10.3853/j.0067-1975.29.1974.230 ISSN 0067-1975 Published by the Australian Museum, Sydney naturenature cultureculture discover discover AustralianAustralian Museum Museum science science is is freely freely accessible accessible online online at at www.australianmuseum.net.au/publications/www.australianmuseum.net.au/publications/ 66 CollegeCollege Street,Street, SydneySydney NSWNSW 2010,2010, AustraliaAustralia o ~------------------~o 25-20 and above 23-17 19- 14 17- 13 ood below 20 20 40 40 ,-- 50 50 Figure I.-Top left, collecting sites near Adelaide; top right, ditto near Sydney; bottom, collecting locations inset, showing also currents of warm, cool (interrupted lines) and cold water (dotted lines). A second smaller arrow-head indicates that the current occasionally reverses. Coastal water types and the mean position of the subtropical convergence (see p. 147) modified from Knox (1963), with mean summer (February) and winter (August) temperatures in degreesC. SPIRORBINAE (POLYCHAETA: SERPULIDAE) FROM SOUTHEASTERN AUSTRALIA. Notes on their Taxonomy, Ecology, and Distribution By E. W. KNIGHT-jONES and PHYLLIS KNIGHT-jONES University College of Swansea, U.K. and L. C. LLEWELLYN, New South Wales State Fisheries, Sydney, Australia Figures 1-14 Manuscript received, 1st September, 1972 SUMMARY Fifteen species belonging to seven genera are described, with pictorial and dichotomous keys to identification and notes on their distribution in other regions. All occur on or adjoining the shore, or on seaweeds cast ashore. -
Phylogenetic Relationships of Serpulidae (Annelida: Polychaeta) Based on 18S Rdna Sequence Data, and Implications for Opercular Evolution Janina Lehrkea,Ã, Harry A
ARTICLE IN PRESS Organisms, Diversity & Evolution 7 (2007) 195–206 www.elsevier.de/ode Phylogenetic relationships of Serpulidae (Annelida: Polychaeta) based on 18S rDNA sequence data, and implications for opercular evolution Janina Lehrkea,Ã, Harry A. ten Hoveb, Tara A. Macdonaldc, Thomas Bartolomaeusa, Christoph Bleidorna,1 aInstitute for Zoology, Animal Systematics and Evolution, Freie Universitaet Berlin, Koenigin-Luise-Street 1-3, 14195 Berlin, Germany bZoological Museum, University of Amsterdam, P.O. Box 94766, 1090 GT Amsterdam, The Netherlands cBamfield Marine Sciences Centre, Bamfield, British Columbia, Canada, V0R 1B0 Received 19 December 2005; accepted 2 June 2006 Abstract Phylogenetic relationships of (19) serpulid taxa (including Spirorbinae) were reconstructed based on 18S rRNA gene sequence data. Maximum likelihood, Bayesian inference, and maximum parsimony methods were used in phylogenetic reconstruction. Regardless of the method used, monophyly of Serpulidae is confirmed and four monophyletic, well- supported major clades are recovered: the Spirorbinae and three groups hitherto referred to as the Protula-, Serpula-, and Pomatoceros-group. Contrary to the taxonomic literature and the hypothesis of opercular evolution, the Protula- clade contains non-operculate (Protula, Salmacina) and operculate taxa both with pinnulate and non-pinnulate peduncle (Filograna vs. Vermiliopsis), and most likely is the sister group to Spirorbinae. Operculate Serpulinae and poorly or non-operculate Filograninae are paraphyletic. It is likely that lack of opercula in some serpulid genera is not a plesiomorphic character state, but reflects a special adaptation. r 2007 Gesellschaft fu¨r Biologische Systematik. Published by Elsevier GmbH. All rights reserved. Keywords: Serpulidae; Phylogeny; Operculum; 18S rRNA gene; Annelida; Polychaeta Introduction distinctive calcareous tubes and bilobed tentacular crowns, each with numerous radioles that bear shorter Serpulids are common members of marine hard- secondary branches (pinnules) on the inner side. -
Biomineralization of Polychaete Annelids in the Fossil Record
minerals Review Biomineralization of Polychaete Annelids in the Fossil Record Olev Vinn Department of Geology, University of Tartu, Ravila 14A, 50411 Tartu, Estonia; [email protected]; Tel.: +372-5067728 Received: 31 August 2020; Accepted: 25 September 2020; Published: 29 September 2020 Abstract: Ten distinct microstructures occur in fossil serpulids and serpulid tubes can contain several layers with different microstructures. Diversity and complexity of serpulid skeletal structures has greatly increased throughout their evolution. In general, Cenozoic serpulid skeletal structures are better preserved than Mesozoic ones. The first complex serpulid microstructures comparable to those of complex structures of molluscs appeared in the Eocene. The evolution of serpulid tube microstructures can be explained by the importance of calcareous tubes for serpulids as protection against predators and environmental disturbances. Both fossil cirratulids and sabellids are single layered and have only spherulitic prismatic tube microstructures. Microstructures of sabellids and cirratulids have not evolved since the appearance of calcareous species in the Jurassic and Oligocene, respectively. The lack of evolution in sabellids and cirratulids may result from the unimportance of biomineralization for these groups as only few species of sabellids and cirratulids have ever built calcareous tubes. Keywords: biominerals; calcite; aragonite; skeletal structures; serpulids; sabellids; cirratulids; evolution 1. Introduction Among polychaete annelids, calcareous tubes are known in serpulids, cirratulids and sabellids [1–3]. The earliest serpulids and sabellids are known from the Permian [4], and cirratulids from the Oligocene [5]. Only serpulids dwell exclusively within calcareous tubes. Polychaete annelids build their tubes from calcite, aragonite or a mixture of both polymorphs. Calcareous polychaete tubes possess a variety of ultrastructural fabrics, from simple to complex, some being unique to annelids [1]. -
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BROWN ALGAE [147 Species] (
CHECKLIST of the SEAWEEDS OF IRELAND: BROWN ALGAE [147 species] (http://seaweed.ucg.ie/Ireland/Check-listPhIre.html) PHAEOPHYTA: PHAEOPHYCEAE ECTOCARPALES Ectocarpaceae Acinetospora Bornet Acinetospora crinita (Carmichael ex Harvey) Kornmann Dichosporangium Hauck Dichosporangium chordariae Wollny Ectocarpus Lyngbye Ectocarpus fasciculatus Harvey Ectocarpus siliculosus (Dillwyn) Lyngbye Feldmannia Hamel Feldmannia globifera (Kützing) Hamel Feldmannia simplex (P Crouan et H Crouan) Hamel Hincksia J E Gray - Formerly Giffordia; see Silva in Silva et al. (1987) Hincksia granulosa (J E Smith) P C Silva - Synonym: Giffordia granulosa (J E Smith) Hamel Hincksia hincksiae (Harvey) P C Silva - Synonym: Giffordia hincksiae (Harvey) Hamel Hincksia mitchelliae (Harvey) P C Silva - Synonym: Giffordia mitchelliae (Harvey) Hamel Hincksia ovata (Kjellman) P C Silva - Synonym: Giffordia ovata (Kjellman) Kylin - See Morton (1994, p.32) Hincksia sandriana (Zanardini) P C Silva - Synonym: Giffordia sandriana (Zanardini) Hamel - Only known from Co. Down; see Morton (1994, p.32) Hincksia secunda (Kützing) P C Silva - Synonym: Giffordia secunda (Kützing) Batters Herponema J Agardh Herponema solitarium (Sauvageau) Hamel Herponema velutinum (Greville) J Agardh Kuetzingiella Kornmann Kuetzingiella battersii (Bornet) Kornmann Kuetzingiella holmesii (Batters) Russell Laminariocolax Kylin Laminariocolax tomentosoides (Farlow) Kylin Mikrosyphar Kuckuck Mikrosyphar polysiphoniae Kuckuck Mikrosyphar porphyrae Kuckuck Phaeostroma Kuckuck Phaeostroma pustulosum Kuckuck -
Investigating the Genetic Origin of Three Fucus Morphotypes Using Microsatellite Analysis
Investigating the genetic origin of three Fucus morphotypes using microsatellite analysis Frida Catharina Skovereng Knoop Master of Marine Biology, June 2021 Supervisors: Inga Kjersti Sjøtun, Pedro Miguel de Azevedo Ribeiro, Geir Dahle Department of Biological Sciences, University of Bergen 1 Acknowledgements First, I would like to say thank you Kjersti, for shaping the thesis and for giving me the opportunity to participate in this project. Without exception, you have been so kind and supportive throughout the whole process. Although I only got to explore a small part of the vast world of algae, it surely has been an inspirational and interesting journey full of new learnings. Thank you for your guidance and patience in the field, the lab, and for always answering my questions. I could not ask for a better supervisor, and it has been a pleasure to work with you. Pedro, thank you for being an excellent co-supervisor. During this thesis, I very much appreciated your positive attitude and patience. Thank you for taking your time to explain the processes behind the molecular work and for guiding me through the statistical part, which I found particularly challenging. During stressful times, your support kept me calm and made sure I did not lose focus. Also, your feedback was very much appreciated. A special thank you to co-supervisor Geir Dahle at the Institute of Marine Science (IMR) for taking your time to help with the genetic analysis, the ABI Machine, and allele scoring, which was only possible at IMR. I also want to thank you for sharing your knowledge regarding microsatellite analysis, being helpful with the statistics, and providing good feedback. -
The Marine Fauna of New Zealand : Spirorbinae (Polychaeta : Serpulidae)
ISSN 0083-7903, 68 (Print) ISSN 2538-1016; 68 (Online) The Marine Fauna of New Zealand : Spirorbinae (Polychaeta : Serpulidae) by PETER J. VINE ANOGlf -1,. �" ii 'i ,;.1, J . --=--� • ��b, S�• 1 • New Zealand Oceanographic Institute Memoir No. 68 1977 The Marine Fauna of New Zealand: Spirorbinae (Polychaeta: Serpulidae) This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/3.0/ Frontispiece Spirorbinae on a piece of alga washed up on the New Zealand seashore. This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/3.0/ NEW ZEALAND DEPARTMENT OF SCIENTIFIC AND INDUSTRIAL RESEARCH The Marine Fauna of New Zealand: Spirorbinae (Polychaeta: Serpulidae) by PETER J. VINE Department of Zoology, University College, Singleton Park, Swansea, Wales, UK and School of Biological Sciences, James Cook University of North Queensland, Townsville, Australia PERMANENT ADDRESS "Coe! na Mara", Faul, c/- Dr Casey, Clifden, County Galway, Ireland New Zealand Oceanographic Institute Memoir No. 68 1977 This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/3.0/ Citation according to World list of Scientific Periodicals (4th edition: Mem. N.Z. oceanogr. Inst. 68 ISSN 0083-7903 Received for publication at NZOI January 1973 Edited by T. K. Crosby, Science InformationDivision, DSIR and R. -
OREGON ESTUARINE INVERTEBRATES an Illustrated Guide to the Common and Important Invertebrate Animals
OREGON ESTUARINE INVERTEBRATES An Illustrated Guide to the Common and Important Invertebrate Animals By Paul Rudy, Jr. Lynn Hay Rudy Oregon Institute of Marine Biology University of Oregon Charleston, Oregon 97420 Contract No. 79-111 Project Officer Jay F. Watson U.S. Fish and Wildlife Service 500 N.E. Multnomah Street Portland, Oregon 97232 Performed for National Coastal Ecosystems Team Office of Biological Services Fish and Wildlife Service U.S. Department of Interior Washington, D.C. 20240 Table of Contents Introduction CNIDARIA Hydrozoa Aequorea aequorea ................................................................ 6 Obelia longissima .................................................................. 8 Polyorchis penicillatus 10 Tubularia crocea ................................................................. 12 Anthozoa Anthopleura artemisia ................................. 14 Anthopleura elegantissima .................................................. 16 Haliplanella luciae .................................................................. 18 Nematostella vectensis ......................................................... 20 Metridium senile .................................................................... 22 NEMERTEA Amphiporus imparispinosus ................................................ 24 Carinoma mutabilis ................................................................ 26 Cerebratulus californiensis .................................................. 28 Lineus ruber ......................................................................... -
(Annelida: Polychaeta: Serpulidae). II
Invertebrate Zoology, 2015, 12(1): 61–92 © INVERTEBRATE ZOOLOGY, 2015 Tube morphology, ultrastructures and mineralogy in recent Spirorbinae (Annelida: Polychaeta: Serpulidae). II. Tribe Spirorbini A.P. Ippolitov1, A.V. Rzhavsky2 1 Geological Institute of Russian Academy of Sciences (GIN RAS), 7 Pyzhevskiy per., Moscow, Russia, 119017, e-mail: [email protected] 2 A.N. Severtsov Institute of Ecology and Evolution of Russian Academy of Sciences (IPEE RAS), 33 Leninskiy prosp., Moscow, Russia, 119071, e-mail: [email protected] ABSTRACT: This is the second paper of the series started with Ippolitov and Rzhavsky (2014) providing detailed descriptions of recent spirorbin tubes, their mineralogy and ultrastructures. Here we describe species of the tribe Spirorbini Chamberlin, 1919 that includes a single genus Spirorbis Daudin, 1800. Tube ultrastructures found in the tribe are represented by two types — irregularly oriented prismatic (IOP) structure forming the thick main layer of the tube and in some species spherulitic prismatic (SPHP) structure forming an outer layer and, sometimes, inner. Mineralogically tubes are either calcitic or predom- inantly aragonitic. Correlations of morphological, ultrastructural, and mineralogical char- acters are discussed. All studied members of Spirorbini can be organized into three groups that are defined by both tube characters and biogeographical patterns and thus, likely correspond to three phylogenetic clades within Spirorbini. How to cite this article: Ippolitov A.P., Rzhavsky A.V. 2015. Tube morphology, ultrastruc- tures and mineralogy in recent Spirorbinae (Annelida: Polychaeta: Serpulidae). II. Tribe Spirorbini // Invert. Zool. Vol.12. No.1. P.61–92. KEY WORDS: Tube ultrastructures, tube morphology, tube mineralogy, scanning electron microscopy, X-ray diffraction analysis, Spirorbinae, Spirorbini. -
Antioxidant Contents of Fucus Vesiculosus L., in Response to Environmental Parameters
MADALENA CARIA MENDES Antioxidant Contents of Fucus vesiculosus L., in Response to Environmental Parameters UNIVERSIDADE DO ALGARVE Faculdade de Ciências e Tecnologia 2017 MADALENA CARIA MENDES Antioxidant Contents of Fucus vesiculosus L., in Response to Environmental Parameters Mestrado em Aquacultura e Pescas Trabalho efetuado sob a orientação de: Susan L. Holdt1 Ester A. Serrão2 1 DTU Fødevareinstituttet, Technical University of Denmark, Kemitorvet, Bygning 202, DK-2800 Kgs Lyngby, Denmark. 2 Universidade do Algarve, CCMAR, Campus de Gambelas, P-8005-139 Faro, Portugal. UNIVERSIDADE DO ALGARVE Faculdade de Ciências e Tecnologia 2017 Declaração de Autoria Declaro ser a autora deste trabalho, que é original e inédito. Autores e trabalhos consultados estão devidamente citados no texto e constam da listagem de referências incluída. i Copyright Madalena Caria Mendes A Universidade do Algarve reserva para si o direito, em conformidade com o disposto no Código do Direito de Autor e dos Direitos Conexos, de arquivar, reproduzir e publicar a obra, independentemente do meio utilizado, bem como de a divulgar através de repositórios científicos e de admitir a sua cópia e distribuição para fins meramente educacionais ou de investigação e não comerciais, conquanto seja dado o devido crédito ao autor e editor respetivos. ii Acknowledgements This thesis entitled Antioxidant contents of Fucus vesiculosus L., in response to environmental parameters was conducted at the Research Group for Bioactives, analysis and applications, at the National Food Institute, Technical University of Denmark, under the Erasmus + traineeship program. I would like to thank my dear supervisors, for their great supervision, guidance and seaweed knowledge, Professors Susan L. Holdt and Ester A. -
Comparative Ultrastructure of the Radiolar Crown in Sabellida (Annelida)
Comparative ultrastructure of the radiolar crown in Sabellida (Annelida) Tilic, Ekin; Rouse, Greg W.; Bartolomaeus, Thomas Published in: Zoomorphology DOI: 10.1007/s00435-020-00509-x Publication date: 2021 Document version Publisher's PDF, also known as Version of record Document license: CC BY Citation for published version (APA): Tilic, E., Rouse, G. W., & Bartolomaeus, T. (2021). Comparative ultrastructure of the radiolar crown in Sabellida (Annelida). Zoomorphology, 140(1), 27-45. https://doi.org/10.1007/s00435-020-00509-x Download date: 30. sep.. 2021 Zoomorphology (2021) 140:27–45 https://doi.org/10.1007/s00435-020-00509-x ORIGINAL PAPER Comparative ultrastructure of the radiolar crown in Sabellida (Annelida) Ekin Tilic1 · Greg W. Rouse2 · Thomas Bartolomaeus1 Received: 31 August 2020 / Revised: 4 November 2020 / Accepted: 17 November 2020 / Published online: 7 December 2020 © The Author(s) 2020 Abstract Three major clades of tube-dwelling annelids are grouped within Sabellida: Fabriciidae, Serpulidae and Sabellidae. The most characteristic feature of these animals is the often spectacularly colorful and fower-like radiolar crown. Holding up such delicate, feathery appendages in water currents requires some sort of internal stabilization. Each of the above-mentioned family-ranked groups has overcome this problem in a diferent way. Herein we describe the arrangement, composition and ultrastructure of radiolar tissues for fabriciids, sabellids and serpulids using transmission electron microscopy, histology and immunohistochemistry. Our sampling of 12 species spans most of the phylogenetic lineages across Sabellida and, from within Sabellidae, includes representatives of Myxicolinae, Sabellinae and the enigmatic sabellin Caobangia. We further characterize the ultrastructure of the chordoid cells that make up the supporting cellular axis in Sabellidae and discuss the evolution of radiolar tissues within Sabellida in light of the recently published phylogeny of the group.