Stabilization of Anti-Aromatic and Strained Five-Membered Rings with A
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An Empirical Formula Expressing the Mutual Dependence of C-C Bond Distances* Arpad Furka Department of Organic Chemistry Eotvos Lorcind University, Muzeum Krt
CROATICA CHEMICA ACTA CCACAA 56 (2) 191-197 (1983) YU ISSN 0011-1643 CCA-1368 UDC 547 :541.6 Originai Scientific Paper An Empirical Formula Expressing the Mutual Dependence of C-C Bond Distances* Arpad Furka Department of Organic Chemistry Eotvos Lorcind University, Muzeum krt. 4/B Budapest, 1088, Hungary Received August 30, 1982 An empirical formula is suggested to describe the mutuaJ dependence of the length of the bonds formed by a central atom in systems built up from equivalent carbon atoms, e.g. diamond, graphite, the cumulene and polyyne chains and intermediate struc tures between them. A geometrical representation of the relation ship is a regular tetrahedron. A point of this tetrahedron charac terizes the arrangement of the atoms around the central one. From the position of the point the bond distances - and possibly the bond angles - can be deduced. Experimental bond length determinations have made clear in the last few decades that the C-C bond distances vary over a relatively long range, from about 1.2 A to about 1.6 A. There were several attempts to correlate these bond distances on empirical way to different factors like double-bond 1 2 4 character, • n:-bond order,3 state of hybridization, •5 the number of adjacent bonds,6 or the overlap integrals.7 Recently ·a new empirical formula has been suggested to describe the mutual dependence of the C-C bond distances.8 The subject of this paper is the interpretation of this empirical equation. Carbon has three allotropic modifications: diamond, graphite and the not completely characterized chain form9•10 (carbynes). -
The Synthesis of Novel Cyclohexyne Precursors for an Intramolecular
The Synthesis of Novel Cyclohexyne Precursors for an Intramolecular Pauson-Khand Type Reaction Honors Thesis by Samuel Isaac Etkind In partial fulfillment of the requirements for graduation with the Dean’s Scholars Honors Degree in Chemistry ______________________________ __________________ Stephen F. Martin Date Supervising Professor Table of Contents Acknowledgements ......................................................................................................................... 3 Abstract ........................................................................................................................................... 4 1. Introduction ................................................................................................................................. 5 1.1 The Synthesis and Application of Strained Cycloalkynes .................................................... 5 1.2 The Pauson-Khand Reaction ................................................................................................. 8 1.3 Potential Utility of Cyclohexyne in a Pauson-Khand Reaction .......................................... 11 1.4 Previous Work Towards This Goal ..................................................................................... 13 2. Results ....................................................................................................................................... 17 2.1 Second Generation Approach to Cyclohexyne Precursors ................................................. 17 2.2 Third Generation Approach -
Conversion of Methoxy and Hydroxyl Functionalities of Phenolic Monomers Over Zeolites Rajeeva Thilakaratne Iowa State University
Chemical and Biological Engineering Publications Chemical and Biological Engineering 2016 Conversion of methoxy and hydroxyl functionalities of phenolic monomers over zeolites Rajeeva Thilakaratne Iowa State University Jean-Philippe Tessonnier Iowa State University, [email protected] Robert C. Brown Iowa State University, [email protected] Follow this and additional works at: https://lib.dr.iastate.edu/cbe_pubs Part of the Biomechanical Engineering Commons, and the Catalysis and Reaction Engineering Commons The ompc lete bibliographic information for this item can be found at https://lib.dr.iastate.edu/ cbe_pubs/328. For information on how to cite this item, please visit http://lib.dr.iastate.edu/ howtocite.html. This Article is brought to you for free and open access by the Chemical and Biological Engineering at Iowa State University Digital Repository. It has been accepted for inclusion in Chemical and Biological Engineering Publications by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. Conversion of methoxy and hydroxyl functionalities of phenolic monomers over zeolites Abstract This study investigates the mechanisms of gas phase anisole and phenol conversion over zeolite catalyst. These monomers contain methoxy and hydroxyl groups, the predominant functionalities of the phenolic products of lignin pyrolysis. The proposed reaction mechanisms for anisole and phenol are distinct, with significant differences in product distributions. The nia sole mechanism involves methenium ions in the conversion of phenol and alkylating aromatics inside zeolite pores. Phenol converts primarily to benzene and naphthalene via a ring opening reaction promoted by hydroxyl radicals. The hep nol mechanism sheds insights on how reactive bi-radicals generated from fragmented phenol aromatic rings (identified as dominant coke precursors) cyclize rapidly to produce polyaromatic hydrocarbons (PAHs). -
Photochemical Generation of Carbenes and Ketenes from Phenanthrene-Based Precursors Part I: Dimethylalkylidene Part II: Diphenylketene
Colby College Digital Commons @ Colby Honors Theses Student Research 2017 Photochemical Generation of Carbenes and Ketenes from Phenanthrene-based Precursors Part I: Dimethylalkylidene Part II: Diphenylketene Tarini S. Hardikar Student Tarini Hardikar Colby College Follow this and additional works at: https://digitalcommons.colby.edu/honorstheses Part of the Organic Chemistry Commons Colby College theses are protected by copyright. They may be viewed or downloaded from this site for the purposes of research and scholarship. Reproduction or distribution for commercial purposes is prohibited without written permission of the author. Recommended Citation Hardikar, Tarini S. and Hardikar, Tarini, "Photochemical Generation of Carbenes and Ketenes from Phenanthrene-based Precursors Part I: Dimethylalkylidene Part II: Diphenylketene" (2017). Honors Theses. Paper 948. https://digitalcommons.colby.edu/honorstheses/948 This Honors Thesis (Open Access) is brought to you for free and open access by the Student Research at Digital Commons @ Colby. It has been accepted for inclusion in Honors Theses by an authorized administrator of Digital Commons @ Colby. Photochemical Generation of Carbenes and Ketenes from Phenanthrene-based Precursors Part I: Dimethylalkylidene Part II: Diphenylketene TARINI HARDIKAR A Thesis Presented to the Department of Chemistry, Colby College, Waterville, ME In Partial Fulfillment of the Requirements for Graduation With Honors in Chemistry SUBMITTED MAY 2017 Photochemical Generation of Carbenes and Ketenes from Phenanthrene-based Precursors Part I: Dimethylalkylidene Part II: Diphenylketene TARINI HARDIKAR Approved: (Mentor: Dasan M. Thamattoor, Professor of Chemistry) (Reader: Rebecca R. Conry, Associate Professor of Chemistry) “NOW WE KNOW” - Dasan M. Thamattoor Vitae Tarini Shekhar Hardikar was born in Vadodara, Gujarat, India in 1996. She graduated from the S.N. -
Supporting Information
Supplementary Material (ESI) for Chemical Communications This journal is © The Royal Society of Chemistry 2008 Supporting information Thermal cyclotrimerization of tetraphenyl[5]cumulene (tetraphenylhexapentaene) to tricyclodecadiene derivative † Nazrul Islam, Takashi Ooi , Tetsuo Iwasawa, Masaki Nishiuchi and Yasuhiko * Kawamura Institute of Technology and Science, The University of Tokushima, 2-1 Minamijosanjima-cho, Tokushima 770-8506, Japan †Institute of Health Biosciences, The University of Tokushima, 1-78 Shomachi, Tokushima 770-8505, Japan *Corresponding author. E-mail: [email protected] Experimental section 1. General Methods: Chemicals were obtained from Tokyo Kasei (Tokyo Chemical Industry), Wako (Wako Pure Chemical Industries), Aldrich, and Merck and used as received if not specified 1 13 otherwise. H NMR and C NMR spectra were recorded in CDCl3 on a JEOL EX-400 spectrometer with TMS as an internal standard. HPLC analysis was performed on a JASCO high-performance liquid chromatography system equipped with a 4.6 x 250 mm silica gel column (JASCO Finepak® SIL) and a HITACHI diode array detector (HITACHI L-2450; detector wavelength = 254 nm; mobile phase, CH3CN : H2O = 8:2 v/v). UV-VIS spectra were measured with a Hitachi UV-2000 spectrophotometer. Mass spectra were determined by a Shimadzu GC-MS QP-1000 with a direct inlet attachment using an ionizing voltage of 20 and 70 eV. Elemental analyses were performed by using Yanoco MT-5 instrument at the microanalytical laboratory of this university. X-ray crystallographic analysis was performed with a Rigaku RAXIS-RAPID instrument 1 Supplementary Material (ESI) for Chemical Communications This journal is © The Royal Society of Chemistry 2008 (Rigaku Corporation). -
Cycloalkanes, Cycloalkenes, and Cycloalkynes
CYCLOALKANES, CYCLOALKENES, AND CYCLOALKYNES any important hydrocarbons, known as cycloalkanes, contain rings of carbon atoms linked together by single bonds. The simple cycloalkanes of formula (CH,), make up a particularly important homologous series in which the chemical properties change in a much more dramatic way with increasing n than do those of the acyclic hydrocarbons CH,(CH,),,-,H. The cyclo- alkanes with small rings (n = 3-6) are of special interest in exhibiting chemical properties intermediate between those of alkanes and alkenes. In this chapter we will show how this behavior can be explained in terms of angle strain and steric hindrance, concepts that have been introduced previously and will be used with increasing frequency as we proceed further. We also discuss the conformations of cycloalkanes, especially cyclo- hexane, in detail because of their importance to the chemistry of many kinds of naturally occurring organic compounds. Some attention also will be paid to polycyclic compounds, substances with more than one ring, and to cyclo- alkenes and cycloalkynes. 12-1 NOMENCLATURE AND PHYSICAL PROPERTIES OF CYCLOALKANES The IUPAC system for naming cycloalkanes and cycloalkenes was presented in some detail in Sections 3-2 and 3-3, and you may wish to review that ma- terial before proceeding further. Additional procedures are required for naming 446 12 Cycloalkanes, Cycloalkenes, and Cycloalkynes Table 12-1 Physical Properties of Alkanes and Cycloalkanes Density, Compounds Bp, "C Mp, "C diO,g ml-' propane cyclopropane butane cyclobutane pentane cyclopentane hexane cyclohexane heptane cycloheptane octane cyclooctane nonane cyclononane "At -40". bUnder pressure. polycyclic compounds, which have rings with common carbons, and these will be discussed later in this chapter. -
Strain-Promoted 1,3-Dipolar Cycloaddition of Cycloalkynes and Organic Azides
Top Curr Chem (Z) (2016) 374:16 DOI 10.1007/s41061-016-0016-4 REVIEW Strain-Promoted 1,3-Dipolar Cycloaddition of Cycloalkynes and Organic Azides 1 1 Jan Dommerholt • Floris P. J. T. Rutjes • Floris L. van Delft2 Received: 24 November 2015 / Accepted: 17 February 2016 / Published online: 22 March 2016 Ó The Author(s) 2016. This article is published with open access at Springerlink.com Abstract A nearly forgotten reaction discovered more than 60 years ago—the cycloaddition of a cyclic alkyne and an organic azide, leading to an aromatic triazole—enjoys a remarkable popularity. Originally discovered out of pure chemical curiosity, and dusted off early this century as an efficient and clean bio- conjugation tool, the usefulness of cyclooctyne–azide cycloaddition is now adopted in a wide range of fields of chemical science and beyond. Its ease of operation, broad solvent compatibility, 100 % atom efficiency, and the high stability of the resulting triazole product, just to name a few aspects, have catapulted this so-called strain-promoted azide–alkyne cycloaddition (SPAAC) right into the top-shelf of the toolbox of chemical biologists, material scientists, biotechnologists, medicinal chemists, and more. In this chapter, a brief historic overview of cycloalkynes is provided first, along with the main synthetic strategies to prepare cycloalkynes and their chemical reactivities. Core aspects of the strain-promoted reaction of cycloalkynes with azides are covered, as well as tools to achieve further reaction acceleration by means of modulation of cycloalkyne structure, nature of azide, and choice of solvent. Keywords Strain-promoted cycloaddition Á Cyclooctyne Á BCN Á DIBAC Á Azide This article is part of the Topical Collection ‘‘Cycloadditions in Bioorthogonal Chemistry’’; edited by Milan Vrabel, Thomas Carell & Floris P. -
Synthesis of Bowl-Shaped Polycyclic Aromatic Compounds and Homo-Bi-Dentate 4,5-Diarylphenanthrene Ligands
Graduate Theses, Dissertations, and Problem Reports 2008 Synthesis of bowl-shaped polycyclic aromatic compounds and homo-bi-dentate 4,5-diarylphenanthrene ligands Daehwan Kim West Virginia University Follow this and additional works at: https://researchrepository.wvu.edu/etd Recommended Citation Kim, Daehwan, "Synthesis of bowl-shaped polycyclic aromatic compounds and homo-bi-dentate 4,5-diarylphenanthrene ligands" (2008). Graduate Theses, Dissertations, and Problem Reports. 4391. https://researchrepository.wvu.edu/etd/4391 This Dissertation is protected by copyright and/or related rights. It has been brought to you by the The Research Repository @ WVU with permission from the rights-holder(s). You are free to use this Dissertation in any way that is permitted by the copyright and related rights legislation that applies to your use. For other uses you must obtain permission from the rights-holder(s) directly, unless additional rights are indicated by a Creative Commons license in the record and/ or on the work itself. This Dissertation has been accepted for inclusion in WVU Graduate Theses, Dissertations, and Problem Reports collection by an authorized administrator of The Research Repository @ WVU. For more information, please contact [email protected]. Synthesis of Bowl-shaped Polycyclic Aromatic Compounds and Homo-bi-dentate 4,5-Diarylphenanthrene Ligands Daehwan Kim Dissertation Submitted to the Eberly College of Arts and Sciences at West Virginia University in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Organic Chemistry Kung K. Wang, Ph. D., Chair Peter M. Gannett, Ph. D. John H. Penn, Ph. D. Michael Shi, Ph. D. Björn C. -
Fullerenes and Pahs: a Novel Model Explains Their Formation Via
Fullerenes and PAHs: A Novel Model Explains their Formation via Sequential Cycloaddition Reactions Involving C2 Dimers Sylvain L. Smadja [email protected] 10364 Almayo Ave., Suite 304 Los Angeles, CA 90064 “Cove” region closure C20 bowl + 10C2 creates pentagonal ring C50 + 5C2 [2 + 2 + 2] [4 + 2] Cycloadditions Cycloadditions Cage 5C 5C 2 2 closure “Cove” region C40 C50 C60 Buckministerfullerene ABSTRACT: Based on a new understanding of the nature of the bonding in the C2 dimer, a novel bottom-up model is offered that can explain the growth processes of fullerenes and polycyclic aromatic hydrocarbons (PAHs). It is shown how growth sequences involving C2 dimers, that take place in carbon vapor, combustion systems, and the ISM, could give rise to a variety of bare carbon clusters. Among the bare carbon clusters thus formed, some could lead to fullerenes, while others, after hydrogenation, could lead to PAHs. We propose that the formation of hexagonal rings present in these bare carbon clusters are the result of [2+2+2] and [4+2] cycloaddition reactions that involve C2 dimers. In the C60 and C70 fullerenes, each of the twelve pentagons is surrounded by five hexagons and thereby “isolated” from each other. To explain why, we suggest that in bowl-shaped clusters the pentagons can form as the consequence of closures of “cove regions” that exist between hexagonal rings, and that they can also form during cage-closure, which results in the creation of six “isolated” pentagonal rings, and five hexagonal rings. The proposed growth mechanisms can account for the formation of fullerene isomers without the need to invoke the widely used Stone-Wales rearrangement. -
Gas Phase Synthesis of Interstellar Cumulenes. Mass Spectrometric and Theoretical Studies."
rl ì 6. .B,1l thesis titled: "Gas Phase Synthesis of Interstellar Cumulenes. Mass Spectrometric and Theoretical studies." submitted for the Degree of Doctor of Philosophy (Ph.D') by Stephen J. Blanksby B.Sc.(Hons,) from the Department of ChemistrY The University of Adelaide Cì UCE April 1999 Preface Contents Title page (i) Contents (ii) Abstract (v) Statement of OriginalitY (vi) Acknowledgments (vii) List of Figures (ix) Phase" I Chapter 1. "The Generation and Characterisation of Ions in the Gas 1.I Abstract I 1.II Generating ions 2 t0 l.ru The Mass SPectrometer t2 1.IV Characterisation of Ions 1.V Fragmentation Behaviour 22 Chapter 2 "Theoretical Methods for the Determination of Structure and 26 Energetics" 26 2,7 Abstract 27 2.IT Molecular Orbital Theory JJ 2.TII Density Functional Theory 2.rv Calculation of Molecular Properties 34 2.V Unimolecular Reactions 35 Chapter 3 "Interstellar and Circumstellar Cumulenes. Mass Spectrometric and 38 Related Studies" 3.I Abstract 38 3.II Interstellar Cumulenes 39 3.III Generation of Interstellar Cumulenes by Mass Spectrometry 46 3.IV Summary 59 Preface Chapter 4 "Generation of Two Isomers of C5H from the Corresponding Anions' 61 ATheoreticallyMotivatedMassSpectrometricStudy.'. 6l 4.r Abstract 62 4.rl Introduction 66 4.III Results and Discussion 83 4.IV Conclusions 84 4.V Experimental Section 89 4.VI Appendices 92 Chapter 5 "Gas Phase Syntheses of Three Isomeric CSHZ Radical Anions and Their Elusive Neutrals. A Joint Experimental and Theoretical Study." 92 5.I Abstract 93 5.II Introduction 95 5.ru Results and Discussion t12 5.IV Conclusions 113 5.V Experimental Section ttl 5.VI Appendices t20 Chapter 6 "Gas Phase Syntheses of Three Isomeric ClHz Radical Anions and Their Elusive Neutrals. -
WO 2013/089962 Al 20 June 2013 (20.06.2013) W P O P C T
(12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization International Bureau (10) International Publication Number (43) International Publication Date WO 2013/089962 Al 20 June 2013 (20.06.2013) W P O P C T (51) International Patent Classification: (81) Designated States (unless otherwise indicated, for every B01J 31/04 (2006.01) B01J 31/18 (2006.01) kind of national protection available): AE, AG, AL, AM, B01J 31/14 (2006.01) B01J 31/22 (2006.01) AO, AT, AU, AZ, BA, BB, BG, BH, BN, BR, BW, BY, BZ, CA, CH, CL, CN, CO, CR, CU, CZ, DE, DK, DM, (21) Number: International Application DO, DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, GT, PCT/US20 12/065285 HN, HR, HU, ID, IL, IN, IS, JP, KE, KG, KM, KN, KP, (22) International Filing Date: KR, KZ, LA, LC, LK, LR, LS, LT, LU, LY, MA, MD, 15 November 2012 (15.1 1.2012) ME, MG, MK, MN, MW, MX, MY, MZ, NA, NG, NI, NO, NZ, OM, PA, PE, PG, PH, PL, PT, QA, RO, RS, RU, (25) Filing Language: English RW, SC, SD, SE, SG, SK, SL, SM, ST, SV, SY, TH, TJ, (26) Publication Language: English TM, TN, TR, TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW. (30) Priority Data: 13/323,328 12 December 201 1 (12. 12.201 1) US (84) Designated States (unless otherwise indicated, for every kind of regional protection available): ARIPO (BW, GH, (71) Applicant (for all designated States except US): CHEV¬ GM, KE, LR, LS, MW, MZ, NA, RW, SD, SL, SZ, TZ, RON PHILLIPS CHEMICAL COMPANY LP UG, ZM, ZW), Eurasian (AM, AZ, BY, KG, KZ, RU, TJ, [US/US]; 10001 Six Pines Drive, The Woodlands, Texas TM), European (AL, AT, BE, BG, CH, CY, CZ, DE, DK, 77380 (US). -
Highly Accelerated Inverse Electron-Demand Cycloaddition of Electron-Deficient Azides with Aliphatic Cyclooctynes
ARTICLE Received 22 Jul 2014 | Accepted 25 Sep 2014 | Published 10 Nov 2014 DOI: 10.1038/ncomms6378 Highly accelerated inverse electron-demand cycloaddition of electron-deficient azides with aliphatic cyclooctynes Jan Dommerholt1, Olivia van Rooijen2, Annika Borrmann1,Ce´lia Fonseca Guerra2, F. Matthias Bickelhaupt1,2 & Floris L. van Delft1 Strain-promoted azide–alkyne cycloaddition (SPAAC) as a conjugation tool has found broad application in material sciences, chemical biology and even in vivo use. However, despite tremendous effort, SPAAC remains fairly slow (0.2–0.5 M À 1 s À 1) and efforts to increase reaction rates by tailoring of cyclooctyne structure have suffered from a poor trade-off between cyclooctyne reactivity and stability. We here wish to report tremendous acceleration of strain-promoted cycloaddition of an aliphatic cyclooctyne (bicyclo[6.1.0]non-4-yne, BCN) with electron-deficient aryl azides, with reaction rate constants reaching 2.0–2.9 M À 1 s À 1. A remarkable difference in rate constants of aliphatic cyclooctynes versus benzoannulated cyclooctynes is noted, enabling a next level of orthogonality by a judicious choice of azide– cyclooctyne combinations, which is inter alia applied in one-pot three-component protein labelling. The pivotal role of azide electronegativity is explained by density-functional theory calculations and electronic-structure analyses, which indicates an inverse electron-demand mechanism is operative with an aliphatic cyclooctyne. 1 Institute for Molecules and Materials, Radboud University Nijmegen, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands. 2 Department of Theoretical Chemistry and Amsterdam Center for Multiscale Modeling, VU University Amsterdam, De Boelelaan 1083, 1081 HV Amsterdam, The Netherlands.