A Mutation in Rab27a Causes the Vesicle Transport Defects Observed in Ashen Mice
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Exophilin-5 Regulates Allergic Airway Inflammation by Controlling IL-33–Mediated Th2 Responses
The Journal of Clinical Investigation RESEARCH ARTICLE Exophilin-5 regulates allergic airway inflammation by controlling IL-33–mediated Th2 responses Katsuhide Okunishi,1 Hao Wang,1 Maho Suzukawa,2,3 Ray Ishizaki,1 Eri Kobayashi,1 Miho Kihara,4 Takaya Abe,4,5 Jun-ichi Miyazaki,6 Masafumi Horie,7 Akira Saito,7 Hirohisa Saito,8 Susumu Nakae,9 and Tetsuro Izumi1 1Laboratory of Molecular Endocrinology and Metabolism, Department of Molecular Medicine, Institute for Molecular and Cellular Regulation, Gunma University, Maebashi, Japan. 2National Hospital Organization Tokyo National Hospital, Tokyo, Japan. 3Division of Respiratory Medicine and Allergology, Department of Medicine, Teikyo University School of Medicine, Tokyo, Japan. 4Laboratory for Animal Resource Development and 5Genetic Engineering, RIKEN Center for Biosystems Dynamics Research, Kobe, Japan. 6Institute of Scientific and Industrial Research, Osaka University, Osaka, Japan. 7Department of Respiratory Medicine, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan. 8Department of Allergy and Clinical Immunology, National Research Institute for Child Health and Development, Tokyo, Japan. 9Laboratory of Systems Biology, Center for Experimental Medicine and Systems Biology, Institute of Medical Science, The University of Tokyo, Tokyo, Japan. A common variant in the RAB27A gene in adults was recently found to be associated with the fractional exhaled nitric oxide level, a marker of eosinophilic airway inflammation. The small GTPase Rab27 is known to regulate intracellular vesicle traffic, although its role in allergic responses is unclear. We demonstrated that exophilin-5, a Rab27-binding protein, was predominantly expressed in both of the major IL-33 producers, lung epithelial cells, and the specialized IL-5 and IL-13 producers in the CD44hiCD62LloCXCR3lo pathogenic Th2 cell population in mice. -
Rab27a and Rab27b Control Different Steps of the Exosome Secretion Pathway
ARTICLES Rab27a and Rab27b control different steps of the exosome secretion pathway Matias Ostrowski1,2, Nuno B. Carmo3,12, Sophie Krumeich1,2,12, Isabelle Fanget10,12, Graça Raposo4,2, Ariel Savina1,2, Catarina F. Moita3, Kristine Schauer4,2, Alistair N. Hume5, Rui P. Freitas3, Bruno Goud4,2, Philippe Benaroch1,2, Nir Hacohen8,9, Mitsunori Fukuda11, Claire Desnos10, Miguel C. Seabra5,6,7, François Darchen10, Sebastian Amigorena1,2, Luis F. Moita3,13 and Clotilde Thery1,2,13 Exosomes are secreted membrane vesicles that share structural and biochemical characteristics with intraluminal vesicles of multivesicular endosomes (MVEs). Exosomes could be involved in intercellular communication and in the pathogenesis of infectious and degenerative diseases. The molecular mechanisms of exosome biogenesis and secretion are, however, poorly understood. Using an RNA interference (RNAi) screen, we identified five Rab GTPases that promote exosome secretion in HeLa cells. Among these, Rab27a and Rab27b were found to function in MVE docking at the plasma membrane. The size of MVEs was strongly increased by Rab27a silencing, whereas MVEs were redistributed towards the perinuclear region upon Rab27b silencing. Thus, the two Rab27 isoforms have different roles in the exosomal pathway. In addition, silencing two known Rab27 effectors, Slp4 (also known as SYTL4, synaptotagmin-like 4) and Slac2b (also known as EXPH5, exophilin 5), inhibited exosome secretion and phenocopied silencing of Rab27a and Rab27b, respectively. Our results therefore strengthen the link between MVEs and exosomes, and introduce ways of manipulating exosome secretion in vivo. Exosomes are membrane vesicles secreted into the extracellular space membrane of MVEs into the lumen of these endosomes14. -
The Genetics of Intellectual Disability: Whole Exome Sequencing to Find Causative Variants in Severe Cases
Master’s Project in Medicine No 4362 The Genetics of Intellectual Disability: whole exome sequencing to find causative variants in severe cases Student Winteler Florence Supervisor Prof. Reymond Alexandre, Ph.D. Center for Integrative Genomics, UNIL Co-Supervisor Gueneau Lucie, Ph.D. Center for Integrative Genomics, UNIL Expert Prof. Draganski Bogdan, Dr. méd Département des neurosciences cliniques, CHUV Lausanne, 25.11.2017 Abstract Intellectual disability (ID) affects 1-3% of the population. A genetic origin is estimated to account for about half of the currently undiagnosed cases, and despite recent successes in identifying some of the genes, it has been suggested that hundreds more genes remain to be identified. ID can be isolated or part of a more complex clinical picture –indeed other symptoms are often found in patients with severe genetic ID, such as developmental delay, organ malformations or seizures. In this project, we used whole exome sequencing (WES) to analyse the coding regions of the genes (exons) of patients with undiagnosed ID and that of their families. The variants called by our algorithm were then grossly sorted out using criteria such as frequency in the general population and predicted pathogenicity. A second round of selection was made by looking at the relevant literature about the function of the underlying genes and pathways involved. The selected variants were then Sanger-sequenced for confirmation. This strategy allowed us to find the causative variant and give a diagnosis to the first family we analysed, as the patient was carrying a mutation in the Methyl-CpG binding protein 2 gene (MECP2), already known to cause Rett syndrome. -
RAB27A Promotes Melanoma Cell Invasion and Metastasis Via Regulation of Pro
RAB27A promotes melanoma cell invasion and metastasis via regulation of pro- invasive exosomes Dajiang Guo1,2*, Goldie Y. L. Lui1,2*, Siew Li Lai1, James S. Wilmott2,3, Shweta Tikoo1,2, Louise A. Jackett2,3,4, Camelia Quek3, Darren L. Brown5, Danae M. Sharp1,2, Rain Y.Q. Kwan1,2, Diego Chacon6,7, Jason H. Wong7,8, Dominik Beck6,7, Michelle van Geldermalsen1,2, Jeff Holst1,2, John F. Thompson2,3,4, Graham J. Mann3,9, Richard A. Scolyer2,3,4, Jennifer L. Stow5, Wolfgang Weninger1,10,11#, Nikolas K. Haass1,10,12#, Kimberley A. Beaumont1,2# 1The Centenary Institute, The University of Sydney, Newtown, NSW, Australia; Article 2Sydney Medical School, The University of Sydney, Camperdown, NSW, Australia; 3Melanoma Institute Australia, The University of Sydney, North Sydney, NSW, Australia; 4Royal Prince Alfred Hospital, Camperdown, NSW, Australia; 5The Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, Australia; 6Centre for Health Technologies and the School of Biomedical Engineering, University of Technology, Sydney, NSW, Australia; 7Adult Cancer Program, Lowy Cancer Research Centre, Prince of Wales Clinical School, University of New South Wales, Sydney, NSW, Australia; 8School of Biomedical Sciences, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Pok Fu Lam, Hong Kong; 9Centre for Cancer Research, Westmead Institute for Medical Research, The University of Sydney, Westmead, NSW, Australia; 10Discipline of Dermatology, The Accepted University of Sydney, Camperdown, NSW, Australia; 11Department of Dermatology, Royal Prince Alfred Hospital, Camperdown, NSW, Australia; 12The University of This article has been accepted for publication and undergone full peer review but has not been through the copyediting, typesetting, pagination and proofreading process, which may lead to differences between this version and the Version of Record. -
Blueprint Genetics Comprehensive Immune and Cytopenia Panel
Comprehensive Immune and Cytopenia Panel Test code: IM0901 Is a 642 gene panel that includes assessment of non-coding variants. Is ideal for patients with a clinical suspicion of an inborn error of immunity, such as, Primary Immunodeficiency, Bone Marrow Failure Syndrome, Dyskeratosis Congenita, Neutropenia, Thrombocytopenia, Hemophagocytic Lymphohistiocytosis, Autoinflammatory Disorders, Complement System Disorder, Leukemia, or Chronic Granulomatous Disease. This panel includes most genes from Primary Immunodeficiency, Severe Combined Immunodeficiency, Complement System Disorder, Bone Marrow Failure Syndrome, Hemophagocytic Lymphohistiocytosis, Congenital Neutropenia, Thrombocytopenia, Congenital Diarrhea, Chronic Granulomatous Disease, Diamond-Blackfan Anemia, Fanconi Anemia, Dyskeratosis Congenita, Autoinflammatory Syndrome, and Hereditary Leukemia Panels as well as many other genes associated with inborn errors of immunity. Please note that unlike our other panels, this panel is on our Whole Exome Sequencing platform and cannot be customized. Pricing may vary from our regular panel pricing. About immunodeficiency and cytopenia disorders There is an enormous amount of phenotypic overlap between immunological and hematological disorders, which makes it challenging to know which of these two systems is not functioning properly. Knowing the underlying genetic cause of a person’s clinical diagnosis, especially immunodeficiency, bone marrow failure, neutropenia, thrombocytopenia, autoinflammatory disease, or bone marrow failure can sometime -
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Essential Role of Microphthalmia Transcription Factor for DNA Replication, Mitosis and Genomic Stability in Melanoma
Oncogene (2011) 30, 2319–2332 & 2011 Macmillan Publishers Limited All rights reserved 0950-9232/11 www.nature.com/onc ORIGINAL ARTICLE Essential role of microphthalmia transcription factor for DNA replication, mitosis and genomic stability in melanoma T Strub1,4, S Giuliano2,4,TYe1, C Bonet2, C Keime1, D Kobi1, S Le Gras1, M Cormont3, R Ballotti2, C Bertolotto2 and I Davidson1 1Institut de Ge´ne´tique et de Biologie Mole´culaire et Cellulaire, CNRS, INSERM, Universite´ de Strasbourg, Illkirch, France; 2INSERM U895 Team 1 and Department of Dermatology, CHU Nice, France and 3INSERM U895 Team 7, Nice, France Malignant melanoma is an aggressive cancer known use of internal promoters (Steingrimsson, 2008). The for its notorious resistance to most current therapies. MITF-M isoform (hereafter designated simply as The basic helix-loop-helix microphthalmia transcription MITF) is the major form produced specifically in the factor (MITF) is the master regulator determining the melanocyte lineage from an intronic promoter (Goding, identity and properties of the melanocyte lineage, and is 2000b). MITF is essential for the survival of melano- regarded as a lineage-specific ‘oncogene’ that has a blasts and postnatal melanocytes (McGill et al., 2002; critical role in the pathogenesis of melanoma. MITF Hou and Pavan, 2008), in which it also controls the promotes melanoma cell proliferation, whereas sustained expression of genes required for the melanin synthesis supression of MITF expression leads to senescence. (Bertolotto et al., 1998). By combining chromatin immunoprecipitation coupled to In addition to regulating multiple aspects of normal high throughput sequencing (ChIP-seq) and RNA sequen- melanocyte function, MITF also has a critical role in cing analyses, we show that MITF directly regulates a melanoma, in which it is required for survival, and set of genes required for DNA replication, repair and controls the proliferation, invasive and metastatic mitosis. -
Griscelli Syndrome Type 2 Sine Albinism: Unraveling Differential RAB27A Effector Engagement
ORIGINAL RESEARCH published: 10 December 2020 doi: 10.3389/fimmu.2020.612977 Griscelli Syndrome Type 2 Sine Albinism: Unraveling Differential RAB27A Effector Engagement Yuta Ohishi 1, Sandra Ammann 2,3, Vahid Ziaee 4,5, Katharina Strege 3, Miriam Groß 2, Carla Vazquez Amos 3, Mohammad Shahrooei 6, Parisa Ashournia 7, Anahita Razaghian 7, Gillian M. Griffiths 3, Stephan Ehl 2, Mitsunori Fukuda 1* and Nima Parvaneh 7,8* 1 Laboratory of Membrane Trafficking Mechanisms, Department of Integrative Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, Japan, 2 Institute for Immunodeficiency, Center for Chronic Immunodeficiency, Faculty of Medicine, Medical Center-University of Freiburg, University of Freiburg, Freiburg, Germany, 3 Cambridge Institute for Medical Research, University of Cambridge, Cambridge, United Kingdom, 4 Department of Pediatrics, Tehran University of Medical Sciences (TUMS), Tehran, Iran, 5 Pediatric Rheumatology Research Group, Rheumatology Research Center, Tehran University of Medical Sciences (TUMS), Tehran, Iran, 6 Laboratory of Clinical Bacteriology and Mycology, Department of Edited by: Microbiology and Immunology, KU Leuven, Leuven, Belgium, 7 Division of Allergy and Clinical Immunology, Department of Antonio Condino-Neto, Pediatrics, Tehran University of Medical Sciences (TUMS), Tehran, Iran, 8 Research Center for Immunodeficiencies, Tehran University of São Paulo, Brazil University of Medical Sciences (TUMS), Tehran, Iran Reviewed by: Alain Fischer, Griscelli syndrome type 2 (GS-2) is an inborn error of immunity characterized by partial Institut National de la Sante´ et de la Recherche Me´ dicale (INSERM), albinism and episodes of hemophagocytic lymphohistiocytosis (HLH). It is caused by France RAB27A mutations that encode RAB27A, a member of the Rab GTPase family. -
Elucidation of Melanogenesis-Associated Signaling Pathways Regulated by Argan Press Cake in B16 Melanoma Cells
nutrients Article Elucidation of Melanogenesis-Associated Signaling Pathways Regulated by Argan Press Cake in B16 Melanoma Cells Thouria Bourhim 1,‡ , Myra O. Villareal 2,3,‡ , Chemseddoha Gadhi 1,2,* and Hiroko Isoda 2,3,* 1 Faculty of Sciences Semlalia, Cadi Ayyad University, Avenue Prince Moulay Abdellah, B.P. 2390, Marrakesh 40000, Morocco; [email protected] 2 Alliance for Research on the Mediterranean and North Africa (ARENA), University of Tsukuba, Tennodai 1-1-1, Tsukuba 305-8572, Japan; [email protected] 3 Faculty of Life and Environmental Sciences, University of Tsukuba, Tennodai 1-1-1, Tsukuba 305-8572, Japan * Correspondence: [email protected] (C.G.); [email protected] (H.I.) ‡ These authors contributed equally to this work. Abstract: The beneficial effect on health of argan oil is recognized worldwide. We have previously reported that the cake that remains after argan oil extraction (argan press-cake or APC) inhibits melanogenesis in B16 melanoma cells in a time-dependent manner without cytotoxicity. In this study, the global gene expression profile of B16 melanoma cells treated with APC extract was determined in order to gain an understanding of the possible mechanisms of action of APC. The results suggest that APC extract inhibits melanin biosynthesis by down-regulating microphthalmia- associated transcription factor (Mitf ) and its downstream signaling pathway through JNK signaling activation, and the inhibition of Wnt/β-catenin and cAMP/PKA signaling pathways. APC extract also prevented the transport of melanosomes by down-regulating Rab27a expression. These results suggest that APC may be an important natural skin whitening product and pharmacological agent used for clinical treatment of pigmentary disorders. -
Rab27a and Munc18 As Molecular Determinants of Snare- Mediated Vesicle Docking, Priming, and Fusion in Glucose Regulatory Tissues
RAB27A AND MUNC18 AS MOLECULAR DETERMINANTS OF SNARE- MEDIATED VESICLE DOCKING, PRIMING, AND FUSION IN GLUCOSE REGULATORY TISSUES by Matthew J. Merrins A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy (Molecular and Integrative Physiology) in The University of Michigan 2008 Doctoral Committee: Professor Edward L. Stuenkel, Co-chair Associate Professor Richard M. Mortensen, Co-chair Professor John A. Williams Professor Robert T. Kennedy Assistant Professor Anatoli N. Lopatin TABLE OF CONTENTS LIST OF FIGURES iii ABSTRACT iv CHAPTER I. BACKGROUND 1 Introduction 1 Vesicle Fusion Machinery: SNARE proteins 8 Vesicle Docking and Priming Machinery: Role of Munc18 13 Vesicle Docking and Priming Machinery: Role of Rab27a 19 Statement of Hypothesis and Specific Aims 31 References 40 II. MUNC18C INTERACTION WITH SYNTAXIN4 MONOMERS AND SNARE COMPLEX INTERMEDIATES IN GLUT4 VESICLE TRAFFICKING 51 Abstract 51 Introduction 52 Experimental Procedures 55 Results 62 Discussion 73 Addendum: Molecular Characterization of Munc18 as a Syntaxin Chaperone 79 References 111 III. RAB27A-DEPENDENT ACTIONS ON VESICLE DOCKING AND PRIMING IN PANCREATIC β-CELLS 115 Abstract 115 Introduction 116 Experimental Procedures 118 Results 119 Discussion 128 References 143 IV. DISCUSSION 148 ii LIST OF FIGURES CHAPTER I: 1.1. Insulin signaling pathways regulating GLUT4 vesicle translocation. 34 1.2. Model of the neuronal SNARE core complex. 35 1.3. Comparison of Sec1/Munc18 (SM) protein crystal structures 36 1.4. Sites of Rab27a action within the pathways of glucose-stimulated insulin secretion in pancreatic β-cells. 37 1.5. Granule pools in the pancreatic β-cell 38 1.6. -
Microphthalmia-Associated Transcription Factor (MITF) – from Waardenburg Syndrome Genetics to Melanoma Therapy
Review article Microphthalmia-associated transcription factor (MITF) – from Waardenburg syndrome genetics to melanoma therapy Ivan Šamija, Josip Lukač, Zvonko Kusić Department of Oncology and Nuclear Medicine, Microphthalmia-associated transcription factor (MITF) was University Hospital “Sestre milosrdnice”, first discovered as protein coded by gene whose mutations Zagreb, Croatia are associated with Waardenburg syndrome. Later, MITF was shown to be key transcription factor regulating melanogen- esis. Further studies have shown that in addition to regulat- ing melanogenesis MITF also plays central role in regulation Corresponding author: of melanocyte development and survival. MITF gene is am- Ivan Šamija plified in a proportion of melanomas and ectopic MITF ex- Department of oncology and Nuclear Medicine pression can transform melanocytes so MITF can function University Hospital “Sestre milosrdnice” as melanoma “lineage survival” oncogene. Different studies Vinogradska cesta 29 have further revealed MITF’s important but complex role in 10000 Zagreb tumorigenesis and progression of melanoma. As expected Croatia from its important role in melanocytes and melanoma MITF [email protected] is intricately regulated on all the levels from transcription to Tel.: + 385 1 3787647 post-translational modifications. Although complex mecha- nisms of MITF functioning are still being revealed, MITF already has a valuable role in managing melanoma patients. Immunohistochemical analysis of MITF has shown both di- agnostic and prognostic value in patients with melanoma. MITF is also a valuable specific marker for detection of circu- lating melanoma cells by reverse-transcription – polymerase chain reaction. MITF has recently been investigated as a po- tential target for melanoma therapy. Key words: Microphthalmia-associated transcription fac- Received: 28 September 2010 tor, Melanoma, Melanocytes, Biological tumor markers, Accepted: 31 October 2010 Waardenburg’s syndrome. -
Case Report Successful Treatment of Griscelli Syndrome with Unrelated Donor Allogeneic Hematopoietic Stem Cell Transplantation
Bone Marrow Transplantation (2002) 29, 995–998 2002 Nature Publishing Group All rights reserved 0268–3369/02 $25.00 www.nature.com/bmt Case report Successful treatment of Griscelli syndrome with unrelated donor allogeneic hematopoietic stem cell transplantation M Arico`1, M Zecca2, N Santoro3, D Caselli2, R Maccario2, C Danesino4, G de Saint Basile5 and F Locatelli2 1Onco Ematologia Pediatrica, Ospedale dei Bambini ‘G Di Cristina’, Palermo, Italy; 2Oncoematologia Pediatrica, IRCCS Policlinico San Matteo, Universita` di Pavia, Italy; 3Clinica Pediatrica, Universita` di Bari, Italy; 4Biologia Generale e Genetica Medica, Universita` di Pavia, Italy; and 5Institut National de la Sante et de la Recherche Medicale (INSERM) U429, Hopital Necker Enfants Malades, Paris, France Summary: show severe neurologic impairment, without apparent immune abnormalities.4 Griscelli syndrome (GS) is a rare autosomal recessive First reports of this new clinical entity, distinct from disorder, characterized by pigmentary dilution of the Chediak–Higashi syndrome (OMIM 214500) (CHS), were skin and hair and in most patients by abnormal regu- provided simultaneously in 1978 by Griscelli et al1 and by lation of the immune system, which results in a syn- Siccardi et al.2 drome of macrophage hyperactivation, known as hemo- In 1997 Pastural et al5 found a homozygous C2332T phagocytic lymophohistiocytosis (HLH). Allogeneic truncating mutation of the gene encoding myosin VA hematopoietic stem cell transplantation (HSCT) is the (MYO5A) in a Turkish girl with GS. Other mutations of the only curative treatment available for genetically same gene were reported in other cases. Recently, Pastural induced HLH. Few cases of successful HSCT from a et al6 presented evidence suggesting the existence of a compatible donor have been reported in children with second locus associated with Griscelli syndrome in the GS.