Isolation, Structure Elucidation, and Biomimetic Total Synthesis
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Enzyme Evolution in Fungal Indole Alkaloid Biosynthesis Amy E
REVIEW ARTICLE Enzyme evolution in fungal indole alkaloid biosynthesis Amy E. Fraley1,2 and David H. Sherman1,2,3,4 1 Department of Medicinal Chemistry, University of Michigan, Ann Arbor, MI, USA 2 Life Sciences Institute, University of Michigan, Ann Arbor, MI, USA 3 Department of Chemistry, University of Michigan, Ann Arbor, MI, USA 4 Department of Microbiology and Immunology, University of Michigan, Ann Arbor, MI, USA Keywords The class of fungal indole alkaloids containing the bicyclo[2.2.2]diazaoc- biosynthesis; Diels–Alderase; natural tane ring is comprised of diverse molecules that display a range of biologi- products; nonribosomal peptides; cal activities. While much interest has been garnered due to their monooxygenase therapeutic potential, this class of molecules also displays unique chemical Correspondence functionality, making them intriguing synthetic targets. Many elegant and D. H. Sherman, Life Sciences Institute, 210 intricate total syntheses have been developed to generate these alkaloids, Washtenaw Avenue, Ann Arbor, MI 48104, but the selectivity required to produce them in high yield presents great USA barriers. Alternatively, if we can understand the molecular mechanisms Tel: +734 615 9907 behind how fungi make these complex molecules, we can leverage the E-mail: [email protected] power of nature to perform these chemical transformations. Here, we describe the various studies regarding the evolutionary development of (Received 21 August 2019, revised 24 November 2019, accepted 27 February enzymes involved in fungal indole alkaloid biosynthesis. 2020) doi:10.1111/febs.15270 Introduction to fungal indole alkaloids The fungal indole alkaloid class of natural products knowledge gaps with detailed biochemical characteri- contains molecules with unique structural properties zation. -
Double the Chemistry, Double the Fun: Structural Diversity and Biological Activity of Marine-Derived Diketopiperazine Dimers
marine drugs Review Double the Chemistry, Double the Fun: Structural Diversity and Biological Activity of Marine-Derived Diketopiperazine Dimers Nelson G. M. Gomes , Renato B. Pereira , Paula B. Andrade and Patrícia Valentão * REQUIMTE/LAQV, Laboratório de Farmacognosia, Departamento de Química, Faculdade de Farmácia, Universidade do Porto, R. Jorge Viterbo Ferreira, nº 228, Porto 4050-313, Portugal; ngomes@ff.up.pt (N.G.M.G.); [email protected] (R.B.P.); pandrade@ff.up.pt (P.B.A.) * Correspondence: valentao@ff.up.pt; Tel.: +351-22-042-8653 Received: 28 August 2019; Accepted: 25 September 2019; Published: 27 September 2019 Abstract: While several marine natural products bearing the 2,5-diketopiperazine ring have been reported to date, the unique chemistry of dimeric frameworks appears to remain neglected. Frequently reported from marine-derived strains of fungi, many naturally occurring diketopiperazine dimers have been shown to display a wide spectrum of pharmacological properties, particularly within the field of cancer and antimicrobial therapy. While their structures illustrate the unmatched power of marine biosynthetic machinery, often exhibiting unsymmetrical connections with rare linkage frameworks, enhanced binding ability to a variety of pharmacologically relevant receptors has been also witnessed. The existence of a bifunctional linker to anchor two substrates, resulting in a higher concentration of pharmacophores in proximity to recognition sites of several receptors involved in human diseases, portrays this group of metabolites as privileged lead structures for advanced pre-clinical and clinical studies. Despite the structural novelty of various marine diketopiperazine dimers and their relevant bioactive properties in several models of disease, to our knowledge, this attractive subclass of compounds is reviewed here for the first time. -
The Effects of Diketopiperazines on the Virulence of Burkholderia Cepacia Complex Species
University of Calgary PRISM: University of Calgary's Digital Repository Graduate Studies The Vault: Electronic Theses and Dissertations 2021-01-15 The effects of diketopiperazines on the virulence of Burkholderia cepacia complex species Jervis, Nicole Marie Jervis, N. M. (2021). The effects of diketopiperazines on the virulence of Burkholderia cepacia complex species (Unpublished master's thesis). University of Calgary, Calgary, AB. http://hdl.handle.net/1880/113002 master thesis University of Calgary graduate students retain copyright ownership and moral rights for their thesis. You may use this material in any way that is permitted by the Copyright Act or through licensing that has been assigned to the document. For uses that are not allowable under copyright legislation or licensing, you are required to seek permission. Downloaded from PRISM: https://prism.ucalgary.ca UNIVERSITY OF CALGARY The effects of diketopiperazines on the virulence of Burkholderia cepacia complex species by Nicole Marie Jervis A THESIS SUBMITTED TO THE FACULTY OF GRADUATE STUDIES IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE GRADUATE PROGRAM IN BIOLOGICAL SCIENCES CALGARY, ALBERTA JANUARY, 2021 © Nicole Marie Jervis 2021 Abstract Recognized as a novel class of quorum sensing inhibitors (QSIs), 2,5-diketopiperazines (DKPs) are small, organic molecules that hold many important physiochemical properties which has led to recent inquiries into their effects towards limiting the pathogenicity of multi- drug resistant bacterial pathogens. Species within the Burkholderia cepacia complex (Bcc) are one such group of pathogens that require attention towards the development of alternative therapeutic strategies given their detrimental clinical outcomes, particularly in patients with cystic fibrosis. -
C7-Prenylation of Tryptophan-Containing Cyclic Dipeptides by 7-Dimethylallyl Tryptophan Synthase Significantly Increases the Anticancer and Antimicrobial Activities
molecules Article C7-Prenylation of Tryptophan-Containing Cyclic Dipeptides by 7-Dimethylallyl Tryptophan Synthase Significantly Increases the Anticancer and Antimicrobial Activities Rui Liu 1,2, Hongchi Zhang 1,2,*, Weiqiang Wu 2, Hui Li 1,2, Zhipeng An 2 and Feng Zhou 2 1 College of Life Science, Shanxi Datong University, Datong 037009, China; [email protected] (R.L.); [email protected] (H.L.) 2 Applied Biotechnology Institute, Shanxi Datong University, Datong 037009, China; [email protected] (W.W.); [email protected] (Z.A.); [email protected] (F.Z.) * Correspondence: [email protected]; Tel.: +86-0352-715-8938 Received: 7 July 2020; Accepted: 10 August 2020; Published: 12 August 2020 Abstract: Prenylated natural products have interesting pharmacological properties and prenylation reactions play crucial roles in controlling the activities of biomolecules. They are difficult to synthesize chemically, but enzymatic synthesis production is a desirable pathway. Cyclic dipeptide prenyltransferase catalyzes the regioselective Friedel–Crafts alkylation of tryptophan-containing cyclic dipeptides. This class of enzymes, which belongs to the dimethylallyl tryptophan synthase superfamily, is known to be flexible to aromatic prenyl receptors, while mostly retaining its typical regioselectivity. In this study, seven tryptophan-containing cyclic dipeptides 1a–7a were converted to their C7-regularly prenylated derivatives 1b–7b in the presence of dimethylallyl diphosphate (DMAPP) by using the purified 7-dimethylallyl tryptophan synthase (7-DMATS) as catalyst. The HPLC analysis of the incubation mixture and the NMR analysis of the separated products showed that the stereochemical structure of the substrate had a great influence on their acceptance by 7-DMATS. Determination of the kinetic parameters proved that cyclo-l-Trp–Gly (1a) consisting of a tryptophanyl and glycine was accepted as the best substrate with a KM value of 169.7 µM and a turnover number 1 of 0.1307 s− . -
Diazaoctane Ring System of Prenylated Indole Alkaloids
CORE Downloaded from orbit.dtu.dk on: Dec 20, 2017 Metadata, citation and similar papers at core.ac.uk Provided by Online Research Database In Technology Fungal Origins of the Bicyclo[2.2.2]diazaoctane Ring System of Prenylated Indole Alkaloids Finefield, Jennifer M.; Frisvad, Jens Christian; Sherman, David H.; Williams, Robert M. Published in: Journal of Natural Products Link to article, DOI: 10.1021/np200954v Publication date: 2012 Document Version Early version, also known as pre-print Link back to DTU Orbit Citation (APA): Finefield, J. M., Frisvad, J. C., Sherman, D. H., & Williams, R. M. (2012). Fungal Origins of the Bicyclo[2.2.2]diazaoctane Ring System of Prenylated Indole Alkaloids. Journal of Natural Products, 75(4), 812- 833. DOI: 10.1021/np200954v General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. • Users may download and print one copy of any publication from the public portal for the purpose of private study or research. • You may not further distribute the material or use it for any profit-making activity or commercial gain • You may freely distribute the URL identifying the publication in the public portal If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. Review pubs.acs.org/jnp Fungal Origins of the Bicyclo[2.2.2]diazaoctane Ring System of Prenylated Indole Alkaloids Jennifer M. -
Aspergillus Fumigatus
Table of Contents Declaration of Authorship x Acknowledgements xi Presentations xii Abbreviations xiv Summary xviii 1.1. General characteristics of Aspergillus fumigatus. .................................................................... 1 1.2. Pathobiology of A. fumigatus. .................................................................................................. 3 1.3. Anti-fungal strategies currently in place for the treatment of IA. ............................................ 6 1.4. A. fumigatus: toxins and virulence factors. ............................................................................ 10 1.5. A. fumigatus genetics and genome information..................................................................... 15 1.6. Secondary metabolites and clustering of biosynthetic genes. ................................................ 18 1.7. Regulation of secondary metabolism gene clusters by the global secondary metabolite regulator LaeA............................................................................................................................... 20 1.8. Association of secondary metabolism with development. ..................................................... 21 1.9. Non-ribosomal peptide synthesis (NRPS).............................................................................. 24 1.9.1. NRPS – An overview ...................................................................................................... 24 1.9.2. Structural arrangements and domain architecture of NRP synthetases.......................... -
Total Synthesis of Biologically Relevant Natural
Total synthesis of biologically relevant natural products in the diketopiperazine and oxepine series : oxidative functionalizations and oxa-Cope rearrangement studies Wei Zhang To cite this version: Wei Zhang. Total synthesis of biologically relevant natural products in the diketopiperazine and oxepine series : oxidative functionalizations and oxa-Cope rearrangement studies. Organic chemistry. Sorbonne Université, 2018. English. NNT : 2018SORUS433. tel-02957219 HAL Id: tel-02957219 https://tel.archives-ouvertes.fr/tel-02957219 Submitted on 5 Oct 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Sorbonne Université Ecole doctorale 406, Chimie Moléculaire Molécules de Communication et Adaptation des Micro-organismes (UMR 7245, CNRS-MNHN) TOTAL SYNTHESIS OF BIOLOGICALLY RELEVANT NATURAL PRODUCTS IN THE DIKETOPIPERAZINE AND OXEPINE SERIES Oxidative functionalizations and oxa-Cope rearrangement studies Par Wei ZHANG Thèse de doctorat de Chimie organique Dirigée par Bastien NAY et Didier BUISSON Présentée et soutenue publiquement le 3 OCTOBRE 2018 Devant un jury composé de : Dr. GRIMAUD Laurence Directrice de Recherche Examinatrice Dr. EVANNO Laurent Maître de conférences Rapporteur Dr. DE PAOLIS Michaël Chargé de Recherche Rapporteur Dr. ROUSSI Fanny Directrice de Recherche Examinatrice Dr. NAY Bastien Directeur de Recherche Examinateur Dr. -
Total Synthesis and Biosynthesis of the Paraherquamides: an Intriguing Story of the Biological Diels–Alder Construction
June 2002 Chem. Pharm. Bull. 50(6) 711—740 (2002) 711 Review Total Synthesis and Biosynthesis of the Paraherquamides: An Intriguing Story of the Biological Diels–Alder Construction Robert Michael WILLIAMS Contribution from the Department of Chemistry, Colorado State University; Fort Collins, Colorado 80523 U.S.A. Received March 13, 2002 The syntheses and biosyntheses of the paraherquamide and brevianamide families of prenylated indole-de- rived alkaloids are reviewed. It has been proposed that the unique bicyclo[2.2.2]diazaoctan ring system that is common to this family of natural products, arises by a biological intramolecular Diels–Alder cycloaddition reac- tion. Both synthetic approaches and total syntheses of several members of this family of natural products are re- viewed. The biosynthesis of these alkaloids has also constituted an active area of research and the current state of knowledge on the biosynthesis of these natural products are reviewed. Key words paraherquamide; marcfortine; brevianamide; asperparaline; biological Diels–Alder; asymmetric synthesis; biosyn- thesis The paraherquamides constitute an unusual family of prenylated indole alkaloids that are secondary metabolites produced by Penicillium sp. and Aspergillus sp. fungi. This review will cover both the biosynthesis as well as the chemi- cal synthesis of this family of natural products. Particular emphasis will be placed on the provocative hypothesis that the core bicyclo[2.2.2]diazaoctan ring system, which is com- Fig. 1. The Diels–Alder [412] Cycloaddition Reaction mon to this entire family, is formed by a biological Diels– Alder reaction. were high-energy substances that significantly change their structure or conformation after the initial cyclocondensation and were subsequently released from the antibody CDR (al- lowing for turnover).