Journal of Fungi Review The Evolving Landscape of Fungal Diagnostics, Current and Emerging Microbiological Approaches Zoe Freeman Weiss 1,2,*, Armando Leon 1 and Sophia Koo 1 1 Brigham and Women’s Hospital, Division of Infectious Diseases, Boston, MA 02115, USA;
[email protected] (A.L.);
[email protected] (S.K.) 2 Massachusetts General Hospital, Division of Infectious Diseases, Boston, MA 02115, USA * Correspondence:
[email protected] Abstract: Invasive fungal infections are increasingly recognized in immunocompromised hosts. Current diagnostic techniques are limited by low sensitivity and prolonged turnaround times. We review emerging diagnostic technologies and platforms for diagnosing the clinically invasive disease caused by Candida, Aspergillus, and Mucorales. Keywords: fungal diagnostics; mycoses; invasive candidiasis; invasive mold infections; invasive aspergillosis; mucormycosis; transplant; immunocompromised host; non-culture diagnostics; cul- ture independent 1. Introduction In recent years, the incidence of invasive fungal infections has increased in parallel with advances in chemotherapies, immunosuppression in solid organ and hematopoietic cell transplantation, and critical care technologies. The diagnosis of invasive fungal disease Citation: Freeman Weiss, Z.; Leon, has traditionally relied on culture, direct microscopy, and histopathology. Conventional A.; Koo, S. The Evolving Landscape culture techniques are frequently insensitive, have prolonged turnaround times (TAT), of Fungal Diagnostics, Current and and may require invasive sampling. An increase in the diversity of pathogenic species Emerging Microbiological makes phenotypic identification challenging, particularly as the number of skilled clinical Approaches. J. Fungi 2021, 7, 127. mycologists declines. Precise species identification is needed given the variability of https://doi.org/10.3390/jof7020127 antifungal drug susceptibility profiles even between closely related organisms.