Deploying Semantic Web Technologies for Information Fusion
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D3.3 Initial Technical & Logical Architecture and Future Work
D3.3 Initial Technical & Logical Architecture and future work recommendations ECP 2008 DILI 558001 Europeana v1.0 D3.3 Initial Technical & Logical Architecture and future work recommendations Deliverable number D3.3 Dissemination level Public Delivery date 30 July 2010 Status Final Makx Dekkers, Stefan Gradmann, Jan Author(s) Molendijk eContentplus This project is funded under the eContentplus programme1, a multiannual Community programme to make digital content in Europe more accessible, usable and exploitable. 1 OJ L 79, 24.3.2005, p. 1. 1/14 D3.3 Initial Technical & Logical Architecture and future work recommendations 1. Introduction This deliverable has two tasks: To characterise the technical and logical architecture of Europeana as a system in its 1.0 state (that is to say by the time of the ‘Rhine’ release To outline the future work recommendations that can reasonably be made at that moment. This also provides a straightforward and logical structure to the document: characterisation comes first followed by the recommendations for future work. 2. Technical and Logical Architecture From a high-level architectural point of view, Europeana.eu is best characterized as a search engine and a database. It loads metadata delivered by providers and aggregators into a database, and uses that database to allow users to search for cultural heritage objects, and to find links to those objects. Various methods of searching and browsing the objects are offered, including a simple and an advanced search form, a timeline, and an openSearch API. It is also important to describe what Europeana.eu does not do, even though people sometimes expect it to. -
A Knowledge Discovery Approach
Semantic XML Tagging of Domain-Specific Text Archives: A Knowledge Discovery Approach Dissertation zur Erlangung des akademisches Grades Doktoringenieur (Dr.-Ing.) angenommen durch die Fakult¨at fur¨ Informatik der Otto-von-Guericke-Universit¨at Magdeburg von Diplom-Kaufmann Peter Karsten Winkler, geboren am 1. Oktober 1971 in Berlin Gutachterinnen und Gutachter: Prof. Dr. Myra Spiliopoulou Prof. Dr. Gunter Saake Prof. Dr. Stefan Conrad Ort und Datum des Promotionskolloquiums: Magdeburg, 22. Januar 2009 Karsten Winkler. Semantic XML Tagging of Domain-Specific Text Archives: A Knowl- edge Discovery Approach. Dissertation, Faculty of Computer Science, Otto von Guericke University Magdeburg, Magdeburg, Germany, January 2009. Contents List of Figures v List of Tables vii List of Algorithms xi Abstract xiii Zusammenfassung xv Acknowledgments xvii 1 Introduction 1 1.1 TheAbundanceofText ............................ 1 1.2 Defining Semantic XML Markup . 3 1.3 BenefitsofSemanticXMLMarkup . 9 1.4 ResearchQuestions ............................... 12 1.5 ResearchMethodology ............................. 14 1.6 Outline...................................... 16 2 Literature Review 19 2.1 Storage, Retrieval, and Analysis of Textual Data . ....... 19 2.1.1 Knowledge Discovery in Textual Databases . 19 2.1.2 Information Storage and Retrieval . 23 2.1.3 InformationExtraction. 25 2.2 Discovering Concepts in Textual Data . 26 2.2.1 Topic Discovery in Text Documents . 27 2.2.2 Extracting Relational Tuples from Text . 31 2.2.3 Learning Taxonomies, Thesauri, and Ontologies . 35 2.3 Semantic Annotation of Text Documents . 39 2.3.1 Manual Semantic Text Annotation . 40 2.3.2 Semi-Automated Semantic Text Annotation . 43 2.3.3 Automated Semantic Text Annotation . 47 2.4 Schema Discovery in Marked-Up Text Documents . -
A Logical Framework for Modularity of Ontologies∗
A Logical Framework for Modularity of Ontologies∗ Bernardo Cuenca Grau, Ian Horrocks, Yevgeny Kazakov and Ulrike Sattler The University of Manchester School of Computer Science Manchester, M13 9PL, UK {bcg, horrocks, ykazakov, sattler }@cs.man.ac.uk Abstract ontology itself by possibly reusing the meaning of external symbols. Hence by merging an ontology with external on- Modularity is a key requirement for collaborative tologies we import the meaning of its external symbols to de- ontology engineering and for distributed ontology fine the meaning of its local symbols. reuse on the Web. Modern ontology languages, To make this idea work, we need to impose certain con- such as OWL, are logic-based, and thus a useful straints on the usage of the external signature: in particular, notion of modularity needs to take the semantics of merging ontologies should be “safe” in the sense that they ontologies and their implications into account. We do not produce unexpected results such as new inconsisten- propose a logic-based notion of modularity that al- cies or subsumptions between imported symbols. To achieve lows the modeler to specify the external signature this kind of safety, we use the notion of conservative exten- of their ontology, whose symbols are assumed to sions to define modularity of ontologies, and then prove that be defined in some other ontology. We define two a property of some ontologies, called locality, can be used restrictions on the usage of the external signature, to achieve modularity. More precisely, we define two no- a syntactic and a slightly less restrictive, seman- tions of locality for SHIQ TBoxes: (i) a tractable syntac- tic one, each of which is decidable and guarantees tic one which can be used to provide guidance in ontology a certain kind of “black-box” behavior, which en- editing tools, and (ii) a more general semantic one which can ables the controlled merging of ontologies. -
Deciding Semantic Matching of Stateless Services∗
Deciding Semantic Matching of Stateless Services∗ Duncan Hull†, Evgeny Zolin†, Andrey Bovykin‡, Ian Horrocks†, Ulrike Sattler†, and Robert Stevens† School of Computer Science, Department of Computer Science, † ‡ University of Manchester, UK University of Liverpool, UK Abstract specifying automated reasoning algorithms for such stateful service descriptions is basically impossible in the presence We present a novel approach to describe and reason about stateless information processing services. It can of any expressive ontology (Baader et al. 2005). Stateless- be seen as an extension of standard descriptions which ness implies that we do not need to formulate pre- and post- makes explicit the relationship between inputs and out- conditions since our services do not change the world. puts and takes into account OWL ontologies to fix the The question we are interested in here is how to help the meaning of the terms used in a service description. This biologist to find a service he or she is looking for, i.e., a allows us to define a notion of matching between ser- service that works with inputs and outputs the biologist can vices which yields high precision and recall for service provide/accept, and that provides the required functionality. location. We explain why matching is decidable, and The growing number of publicly available biomedical web provide biomedical example services to illustrate the utility of our approach. services, 3000 as of February 2006, required better match- ing techniques to locate services. Thus, we are concerned with the question of how to describe a service request Q Introduction and service advertisements Si such that the notion of a ser- Understanding the data generated from genome sequenc- vice S matching the request Q can be defined in a “useful” ing projects like the Human Genome Project is recognised way. -
Bibliography [Abiteboul and Kanellakis, 1989] Serge Abiteboul and Paris Kanellakis
507 Bibliography [Abiteboul and Kanellakis, 1989] Serge Abiteboul and Paris Kanellakis. Object identity as a query language primitive. In Proc. of the ACM SIGMOD Int. Conf. on Management of Data, pages 159–173, 1989. [Abiteboul et al., 1995] Serge Abiteboul, Richard Hull, and Victor Vianu. Foundations of Databases. Addison Wesley Publ. Co., Reading, Massachussetts, 1995. [Abiteboul et al., 1997] Serge Abiteboul, Dallan Quass, Jason McHugh, Jennifer Widom, and Janet L. Wiener. The Lorel query language for semistructured data. Int. J. on Digital Libraries, 1(1):68–88, 1997. [Abiteboul et al., 2000] Serge Abiteboul, Peter Buneman, and Dan Suciu. Data on the Web: from Relations to Semistructured Data and XML. Morgan Kaufmann, Los Altos, 2000. [Abiteboul, 1997] Serge Abiteboul. Querying semi-structured data. In Proc. of the 6th Int. Conf. on Database Theory (ICDT’97), pages 1–18, 1997. [Abrahams et al., 1996] Merryll K. Abrahams, Deborah L. McGuinness, Rich Thomason, Lori Alperin Resnick, Peter F. Patel-Schneider, Violetta Cavalli-Sforza, and Cristina Conati. NeoClassic tutorial: Version 1.0. Technical report, Artificial Intelligence Prin- ciples Research Department, AT&T Labs Research and University of Pittsburgh, 1996. Available as http://www.bell-labs.com/project/classic/papers/NeoTut/NeoTut. html. [Abrett and Burstein, 1987] Glen Abrett and Mark H. Burstein. The KREME knowledge editing environment. Int. J. of Man-Machine Studies, 27(2):103–126, 1987. [Abrial, 1974] J. R. Abrial. Data semantics. In J. W. Klimbie and K. L. Koffeman, editors, Data Base Management, pages 1–59. North-Holland Publ. Co., Amsterdam, 1974. [Achilles et al., 1991] E. Achilles, B. -
Ontology-Based Methods for Analyzing Life Science Data
Habilitation a` Diriger des Recherches pr´esent´ee par Olivier Dameron Ontology-based methods for analyzing life science data Soutenue publiquement le 11 janvier 2016 devant le jury compos´ede Anita Burgun Professeur, Universit´eRen´eDescartes Paris Examinatrice Marie-Dominique Devignes Charg´eede recherches CNRS, LORIA Nancy Examinatrice Michel Dumontier Associate professor, Stanford University USA Rapporteur Christine Froidevaux Professeur, Universit´eParis Sud Rapporteure Fabien Gandon Directeur de recherches, Inria Sophia-Antipolis Rapporteur Anne Siegel Directrice de recherches CNRS, IRISA Rennes Examinatrice Alexandre Termier Professeur, Universit´ede Rennes 1 Examinateur 2 Contents 1 Introduction 9 1.1 Context ......................................... 10 1.2 Challenges . 11 1.3 Summary of the contributions . 14 1.4 Organization of the manuscript . 18 2 Reasoning based on hierarchies 21 2.1 Principle......................................... 21 2.1.1 RDF for describing data . 21 2.1.2 RDFS for describing types . 24 2.1.3 RDFS entailments . 26 2.1.4 Typical uses of RDFS entailments in life science . 26 2.1.5 Synthesis . 30 2.2 Case study: integrating diseases and pathways . 31 2.2.1 Context . 31 2.2.2 Objective . 32 2.2.3 Linking pathways and diseases using GO, KO and SNOMED-CT . 32 2.2.4 Querying associated diseases and pathways . 33 2.3 Methodology: Web services composition . 39 2.3.1 Context . 39 2.3.2 Objective . 40 2.3.3 Semantic compatibility of services parameters . 40 2.3.4 Algorithm for pairing services parameters . 40 2.4 Application: ontology-based query expansion with GO2PUB . 43 2.4.1 Context . 43 2.4.2 Objective . -
Description Logics
Description Logics Franz Baader1, Ian Horrocks2, and Ulrike Sattler2 1 Institut f¨urTheoretische Informatik, TU Dresden, Germany [email protected] 2 Department of Computer Science, University of Manchester, UK {horrocks,sattler}@cs.man.ac.uk Summary. In this chapter, we explain what description logics are and why they make good ontology languages. In particular, we introduce the description logic SHIQ, which has formed the basis of several well-known ontology languages, in- cluding OWL. We argue that, without the last decade of basic research in description logics, this family of knowledge representation languages could not have played such an important rˆolein this context. Description logic reasoning can be used both during the design phase, in order to improve the quality of ontologies, and in the deployment phase, in order to exploit the rich structure of ontologies and ontology based information. We discuss the extensions to SHIQ that are required for languages such as OWL and, finally, we sketch how novel reasoning services can support building DL knowledge bases. 1 Introduction The aim of this section is to give a brief introduction to description logics, and to argue why they are well-suited as ontology languages. In the remainder of the chapter we will put some flesh on this skeleton by providing more technical details with respect to the theory of description logics, and their relationship to state of the art ontology languages. More detail on these and other matters related to description logics can be found in [6]. Ontologies There have been many attempts to define what constitutes an ontology, per- haps the best known (at least amongst computer scientists) being due to Gruber: “an ontology is an explicit specification of a conceptualisation” [47].3 In this context, a conceptualisation means an abstract model of some aspect of the world, taking the form of a definition of the properties of important 3 This was later elaborated to “a formal specification of a shared conceptualisation” [21]. -
Will the Semantic Web Scale?
Panel Discussion P3: Will the Semantic Web scale? New York Sheraton May 19th, 2004 Proposers: Panelists: Organizers: - Raphael Volz - Dr. Cathy Marshall - Raphael Volz - Carole Goble - Prof. Dr. Alon Y. Halevy - Daniel Oberle - Rudi Studer - Prof. Dr. Jürgen Angele - Prof. Dr. Ian Horrocks Panelist 1 Dr. Cathy Marshall Microsoft Corporation Texas A+M University Why the Semantic Web won’t scale the scaled semantic web seen as mass-market product “the Flowbee uses the suction power of your household vacuum to draw the hair up to the desired length, and then gives it a perfect cut.....every time.” Three important questions: • Will it really work? • Who needs it? • Is it safe? 3 will it work? evaluating the semantic web as metadata • compare the semantic web to a widely adopted metadata scheme like the MARC record used for library cataloging – MARC practitioners are members of a community and are trained to create metadata – MARC reduces interpretive load by careful choice of attributes, authority lists, & cataloging rules (AACR, e.g.) to constrain values – MARC records are controlled for interoperability and consistency in various ways (e.g. by clearinghouses like OCLC) – so... on-line catalog (OPAC) users know what to expect 4 will it work? evaluating the semantic web as metadata • by contrast, the semantic web is subject to the following pitfalls as it scales: – social structures for creating universal semantic web metadata are missing (local culture/practices/needs prevail) – semantic web metadata requires substantial interpretation of domain knowledge; underlying assumptions about use are highly situated – no way of ensuring interoperability, consistency, accuracy • e.g. -
Proceedings of the 11Th International Workshop on Ontology
Proceedings of the 11th International Workshop on Ontology Matching (OM-2016) Pavel Shvaiko, Jérôme Euzenat, Ernesto Jiménez-Ruiz, Michelle Cheatham, Oktie Hassanzadeh, Ryutaro Ichise To cite this version: Pavel Shvaiko, Jérôme Euzenat, Ernesto Jiménez-Ruiz, Michelle Cheatham, Oktie Hassanzadeh, et al.. Proceedings of the 11th International Workshop on Ontology Matching (OM-2016). Ontology matching workshop, Kobe, Japan. No commercial editor., pp.1-252, 2016. hal-01421835 HAL Id: hal-01421835 https://hal.inria.fr/hal-01421835 Submitted on 15 Jul 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Ontology Matching OM-2016 Proceedings of the ISWC Workshop Introduction Ontology matching1 is a key interoperability enabler for the semantic web, as well as a useful tactic in some classical data integration tasks dealing with the semantic hetero- geneity problem. It takes ontologies as input and determines as output an alignment, that is, a set of correspondences between the semantically related entities of those on- tologies. These correspondences can be used for various tasks, such as ontology merg- ing, data translation, query answering or navigation on the web of data. Thus, matching ontologies enables the knowledge and data expressed in the matched ontologies to in- teroperate. -
3Rd NASA/IEEE Workshop on Formal Approaches to Agent-Based Systems
Proceedings 3rdNASA/IEEE Workshop on Formal Approaches to Agent-Based Systems Springer-Verlag LNCS vol. 3228 Edited by Michael G. Hinchey, James L. Rash, Walter F. Truszkowski and Christopher A. Rouff Please note: This is a complete draft of the text; the publisher will add the correct page numbers, etc. The current formatting, although not very neat, I is the way the publisher requires it from us. Preface Greenbelt, MD October 2004 Organizing Committee Mike Hinchey, NASA Goddard Space Flight Center Jim Rash, NASA Goddard Space Flight Center Walt Truszkowski, NASA Goddard Space Flight Center Chris Rouff, SAIC I- _- Contents Ecology Based Decentralized Agent Management System Maim D. Pqirakhov, VincentA. Cicirello and William C. Regli ........................ 1 From Abstract to Concrete Nomin Agent Institutions Daide Grossi and Frank Dipm ............................................................ 12 Meeting the Deadline: Why, When and How Frank Dignum, Jan Broersen, Virginia Dignurn and John-Jules Meyer ................ 30 Multi-Agent Systems Reliability, Fuzziness, and Deterrence Michel Rudnimki and H&ne Bestougefl.. ................................................ 41 Formalism Challenges of the Cougaar Model Driven Architecture Shawn A. Bohner. Boby George. Denis Gracirnin andMichael G. Hinchey .......... 58 Facilitating the Specification Capture and Transformation Process in the Development of Multi-Agent Systems Aluizio Haendchen Filho, Nuno Caminah, Edward Hermann Haeusler and Arndt von Staa.. ............................................................................ 73 Using Ontologies to Formalize Services Specifications in Multi-Agent Systems Karin Koogan Breitman, Aluizio Haendchen Filho, Edward Hermann Haeusler and Am& von Staa ............................................................................. 93 Two Formal Gas Models For Multi-Agent Sweeping and Obstacle Avoidance Wesley Ken, Diana Spears, William Spears and David Thayer ...................... 1 13 A Formal kysisof Potential Energy in a Multi-agent System William M Spears, Diana F. -
Justification Oriented Proofs In
Justification Oriented Proofs in OWL Matthew Horridge, Bijan Parsia, and Ulrike Sattler School of Computer Science, The University of Manchester Abstract. Justifications — that is, minimal entailing subsets of an on- tology — are currently the dominant form of explanation provided by ontology engineering environments, especially those focused on the Web Ontology Language (OWL). Despite this, there are naturally occurring justifications that can be very difficult to understand. In essence, justifi- cations are merely the premises of a proof and, as such, do not articulate the (often non-obvious) reasoning which connect those premises with the conclusion. This paper presents justification oriented proofs as a poten- tial solution to this problem. 1 Introduction and Motivation Modern ontology development environments such as Prot´eg´e-4, the NeOn Toolkit, Swoop, and Top Braid Composer, allow users to request explanations for entail- ments (inferences) that they encounter when editing or browsing ontologies. In- deed, the provision of explanation generating functionality is generally seen as being a vital component in such tools. Over the last few years, justifications have become the dominant form of explanation in these tools. This paper examines justifications as a kind of explanation and highlights some problems with them. It then presents justification lemmatisation as a non-standard reasoning service, which can be used to augment a justification with intermediate inference steps, and gives rise to a structure known as a justification oriented proof. Ultimately, a justification oriented proof could be used as an input into some presentation de- vice to help a person step though a justification that is otherwise too difficult for them to understand. -
Toward an Open Knowledge Research Graph.Pdf
THE SERIALS LIBRARIAN https://doi.org/10.1080/0361526X.2019.1540272 Toward an Open Knowledge Research Graph Sören Auera and Sanjeet Mann b aPresenter; bRecorder ABSTRACT KEYWORDS Knowledge graphs facilitate the discovery of information by organizing it into Knowledge graph; scholarly entities and describing the relationships of those entities to each other and to communication; Semantic established ontologies. They are popular with search and e-commerce com- Web; linked data; scientific panies and could address the biggest problems in scientific communication, research; machine learning according to Sören Auer of the Technische Informationsbibliothek and Leibniz University of Hannover. In his NASIG vision session, Auer introduced attendees to knowledge graphs and explained how they could make scientific research more discoverable, efficient, and collaborative. Challenges include incentiviz- ing researchers to participate and creating the training data needed to auto- mate the generation of knowledge graphs in all fields of research. Change in the digital world Thank you to Violeta Ilik and the NASIG Program Planning Committee for inviting me to this conference. I would like to show you where I come from. Leibniz University of Hannover has a castle that belonged to a prince, and next to the castle is the Technische Informationsbibliothek (TIB), responsible for supporting the scientific and technology community in Germany with publications, access, licenses, and digital information services. Figure 1 is an example of a knowledge graph about TIB. The basic ingredients of a knowledge graph are entities and relationships. We are the library of Leibniz University of Hannover and we are a member of Leibniz Association (a German research association).