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A New Type of Plankton Food Web Functioning in Coastal Waters Revealed by Coupling Monte Carlo Markov Chain Linear Inverse Metho
A new type of plankton food web functioning in coastal waters revealed by coupling Monte Carlo Markov Chain Linear Inverse method and Ecological Network Analysis Marouan Meddeb, Nathalie Niquil, Boutheina Grami, Kaouther Mejri, Matilda Haraldsson, Aurélie Chaalali, Olivier Pringault, Asma Sakka Hlaili To cite this version: Marouan Meddeb, Nathalie Niquil, Boutheina Grami, Kaouther Mejri, Matilda Haraldsson, et al.. A new type of plankton food web functioning in coastal waters revealed by coupling Monte Carlo Markov Chain Linear Inverse method and Ecological Network Analysis. Ecological Indicators, Elsevier, 2019, 104, pp.67-85. 10.1016/j.ecolind.2019.04.077. hal-02146355 HAL Id: hal-02146355 https://hal.archives-ouvertes.fr/hal-02146355 Submitted on 3 Jun 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. 1 A new type of plankton food web functioning in coastal waters revealed by coupling 2 Monte Carlo Markov Chain Linear Inverse method and Ecological Network Analysis 3 4 5 Marouan Meddeba,b*, Nathalie Niquilc, Boutheïna Gramia,d, Kaouther Mejria,b, Matilda 6 Haraldssonc, Aurélie Chaalalic,e,f, Olivier Pringaultg, Asma Sakka Hlailia,b 7 8 aUniversité de Carthage, Faculté des Sciences de Bizerte, Laboratoire de phytoplanctonologie 9 7021 Zarzouna, Bizerte, Tunisie. -
University of Oklahoma
UNIVERSITY OF OKLAHOMA GRADUATE COLLEGE MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION SUBMITTED TO THE GRADUATE FACULTY in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY By JOSHUA THOMAS COOPER Norman, Oklahoma 2017 MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION APPROVED FOR THE DEPARTMENT OF MICROBIOLOGY AND PLANT BIOLOGY BY ______________________________ Dr. Boris Wawrik, Chair ______________________________ Dr. J. Phil Gibson ______________________________ Dr. Anne K. Dunn ______________________________ Dr. John Paul Masly ______________________________ Dr. K. David Hambright ii © Copyright by JOSHUA THOMAS COOPER 2017 All Rights Reserved. iii Acknowledgments I would like to thank my two advisors Dr. Boris Wawrik and Dr. J. Phil Gibson for helping me become a better scientist and better educator. I would also like to thank my committee members Dr. Anne K. Dunn, Dr. K. David Hambright, and Dr. J.P. Masly for providing valuable inputs that lead me to carefully consider my research questions. I would also like to thank Dr. J.P. Masly for the opportunity to coauthor a book chapter on the speciation of diatoms. It is still such a privilege that you believed in me and my crazy diatom ideas to form a concise chapter in addition to learn your style of writing has been a benefit to my professional development. I’m also thankful for my first undergraduate research mentor, Dr. Miriam Steinitz-Kannan, now retired from Northern Kentucky University, who was the first to show the amazing wonders of pond scum. Who knew that studying diatoms and algae as an undergraduate would lead me all the way to a Ph.D. -
Planktonic Algal Blooms from 2000 to 2015 in Acapulco
125: 61-93 October 2018 Research article Planktonic algal blooms from 2000 to 2015 in Acapulco Bay, Guerrero, Mexico Florecimientos de microalgas planctónicas de 2000 al 2015 en la Bahía de Acapulco, Guerrero, México María Esther Meave del Castillo1,2 , María Eugenia Zamudio-Resendiz1 ABSTRACT: 1 Universidad Autónoma Metro- Background and Aims: Harmful algal blooms (HABs) affect the marine ecosystem in multiple ways. The politana, Unidad Iztapalapa, De- objective was to document the species that produced blooms in Acapulco Bay over a 15-year period (2000- partamento de Hidrobiología, La- boratorio de Fitoplancton Marino 2015) and analyze the presence of these events with El Niño-Southern Oscillation (ENSO). y Salobre, Av. San Rafael Atlixco Methods: Thirty-five collections, made during the years 2000, 2002-2004, 2006-2011, 2013-2015, were 186, Col. Vicentina, Iztapalapa, undertaken with phytoplankton nets and Van Dorn bottle, yielding 526 samples, of which 423 were quanti- 09340 Cd. Mx., México. fied using the Utermöhl method. The relationship of HAB with ENSO was made with standardized values 2 Author for correspondence: of Multivariate ENSO Index (MEI) and the significance was evaluated with the method quadrant sums of [email protected] Olmstead-Tukey. Key results: Using data of cell density and high relative abundance (>60%), 53 blooms were recorded, most Received: November 21, 2017. of them occurring during the rainy season (June-October) and dry-cold season (November-March), plus 37 Reviewed: January 10, 2018. blooms reported by other authors. These 90 blooms were composed of 40 taxa: 21 diatoms and 19 dinoflagel- Accepted: April 6, 2018. -
Phytoplankton As Key Mediators of the Biological Carbon Pump: Their Responses to a Changing Climate
sustainability Review Phytoplankton as Key Mediators of the Biological Carbon Pump: Their Responses to a Changing Climate Samarpita Basu * ID and Katherine R. M. Mackey Earth System Science, University of California Irvine, Irvine, CA 92697, USA; [email protected] * Correspondence: [email protected] Received: 7 January 2018; Accepted: 12 March 2018; Published: 19 March 2018 Abstract: The world’s oceans are a major sink for atmospheric carbon dioxide (CO2). The biological carbon pump plays a vital role in the net transfer of CO2 from the atmosphere to the oceans and then to the sediments, subsequently maintaining atmospheric CO2 at significantly lower levels than would be the case if it did not exist. The efficiency of the biological pump is a function of phytoplankton physiology and community structure, which are in turn governed by the physical and chemical conditions of the ocean. However, only a few studies have focused on the importance of phytoplankton community structure to the biological pump. Because global change is expected to influence carbon and nutrient availability, temperature and light (via stratification), an improved understanding of how phytoplankton community size structure will respond in the future is required to gain insight into the biological pump and the ability of the ocean to act as a long-term sink for atmospheric CO2. This review article aims to explore the potential impacts of predicted changes in global temperature and the carbonate system on phytoplankton cell size, species and elemental composition, so as to shed light on the ability of the biological pump to sequester carbon in the future ocean. -
Peridinin-Containing Dinoflagellates Are Eukaryotic Protozoans, Which
Investigation of Dinoflagellate Plastid Protein Transport using Heterologous and Homologous in vivo Systems Dissertation zur Erlangung des Doktorgrades der Naturwissenschaften (Dr. rer. nat.) Vorgelegt dem Fachbereich Biologie der Philipps-Universität Marburg von Andrew Scott Bozarth aus Columbia, Maryland, USA Marburg/Lahn 2010 Vom Fachbereich Biologie der Philipps-Universität als Dissertation angenommen am 26.07.2010 angenommen. Erstgutachter: Prof. Dr. Uwe-G. Maier Zweitgutachter: Prof. Dr. Klaus Lingelbach Prof. Dr. Andreas Brune Prof. Dr. Renate Renkawitz-Pohl Tag der Disputation am: 11.10.2010 Results! Why, man, I have gotten a lot of results. I know several thousand things that won’t work! -Thomas A. Edison Publications Bozarth A, Susanne Lieske, Christine Weber, Sven Gould, and Stefan Zauner (2010) Transfection with Dinoflagellate Transit Peptides (in progress). Bolte K, Bullmann L, Hempel F, Bozarth A, Zauner S, Maier UG (2009) Protein Targeting into Secondary Plastids. J. Eukaryot. Microbiol. 56, 9–15. Bozarth A, Maier UG, Zauner S (2009) Diatoms in biotechnology: modern tools and applications. Appl. Microbiol. Biotechnol. 82, 195-201. Maier UG, Bozarth A, Funk HT, Zauner S, Rensing SA, Schmitz-Linneweber C, Börner T, Tillich M (2008) Complex chloroplast RNA metabolism: just debugging the genetic programme? BMC Biol. 6, 36. Hempel F, Bozarth A, Sommer MS, Zauner S, Przyborski JM, Maier UG. (2007) Transport of nuclear-encoded proteins into secondarily evolved plastids. Biol Chem. 388, 899-906. Table of Contents TABLE OF CONTENTS -
Fertilizing the Ocean with Iron Is This a Viable Way to Help Reduce Carbon Dioxide Levels in the Atmosphere?
380 Fertilizing the Ocean with Iron Is this a viable way to help reduce carbon dioxide levels in the atmosphere? 360 ive me half a tanker of iron, and I’ll give you an ice Twenty years on, Martin’s line is still viewed alternately age” may rank as the catchiest line ever uttered by a as a boast or a quip—an opportunity too good to pass up or a biogeochemist.“G The man responsible was the late John Martin, misguided remedy doomed to backfire. Yet over the same pe- former director of the Moss Landing Marine Laboratory, who riod, unrelenting increases in carbon emissions and mount- discovered that sprinkling iron dust in the right ocean waters ing evidence of climate change have taken the debate beyond could trigger plankton blooms the size of a small city. In turn, academic circles and into the free market. the billions of cells produced might absorb enough heat-trap- Today, policymakers, investors, economists, environ- ping carbon dioxide to cool the Earth’s warming atmosphere. mentalists, and lawyers are taking notice of the idea. A few Never mind that Martin companies are planning new, was only half serious when larger experiments. The ab- 340 he made the remark (in his Ocean Iron Fertilization sence of clear regulations for “best Dr. Strangelove accent,” either conducting experiments he later recalled) at an infor- An argument for: Faced with the huge at sea or trading the results mal seminar at Woods Hole consequences of climate change, iron’s in “carbon offset” markets Oceanographic Institution outsized ability to put carbon into the oceans complicates the picture. -
Biological Oceanography - Legendre, Louis and Rassoulzadegan, Fereidoun
OCEANOGRAPHY – Vol.II - Biological Oceanography - Legendre, Louis and Rassoulzadegan, Fereidoun BIOLOGICAL OCEANOGRAPHY Legendre, Louis and Rassoulzadegan, Fereidoun Laboratoire d'Océanographie de Villefranche, France. Keywords: Algae, allochthonous nutrient, aphotic zone, autochthonous nutrient, Auxotrophs, bacteria, bacterioplankton, benthos, carbon dioxide, carnivory, chelator, chemoautotrophs, ciliates, coastal eutrophication, coccolithophores, convection, crustaceans, cyanobacteria, detritus, diatoms, dinoflagellates, disphotic zone, dissolved organic carbon (DOC), dissolved organic matter (DOM), ecosystem, eukaryotes, euphotic zone, eutrophic, excretion, exoenzymes, exudation, fecal pellet, femtoplankton, fish, fish lavae, flagellates, food web, foraminifers, fungi, harmful algal blooms (HABs), herbivorous food web, herbivory, heterotrophs, holoplankton, ichthyoplankton, irradiance, labile, large planktonic microphages, lysis, macroplankton, marine snow, megaplankton, meroplankton, mesoplankton, metazoan, metazooplankton, microbial food web, microbial loop, microheterotrophs, microplankton, mixotrophs, mollusks, multivorous food web, mutualism, mycoplankton, nanoplankton, nekton, net community production (NCP), neuston, new production, nutrient limitation, nutrient (macro-, micro-, inorganic, organic), oligotrophic, omnivory, osmotrophs, particulate organic carbon (POC), particulate organic matter (POM), pelagic, phagocytosis, phagotrophs, photoautotorphs, photosynthesis, phytoplankton, phytoplankton bloom, picoplankton, plankton, -
Phytoplankton
Phytoplankton • What are the phytoplankton? • How do the main groups differ? Phytoplankton Zooplankton Nutrients Plankton “wandering” or “drifting” (incapable of sustained, directed horizontal movement) www.shellbackdon.com Nekton Active swimmers Components of the Plankton Virioplankton: Viruses Bacterioplankton: Bacteria — free living planktobacteria; epibacteria attached to larger particles Mycoplankton: Fungi Phytoplankton: Photosynthetic microalgae, cyanobacteria, and prochlorophytes Zooplankton: Heterotrophic — Protozooplankton (unicellular) and Metazooplankton (larval and adult crustaceans, larval fish, coelenterates…) Components of the Phytoplankton: Older scheme Netplankton: Plankton that is retained on a net or screen, usually Inspecting a small plankton 20 - 100 µm net. In: "From the Surface to the Bottom of the Sea" by H. Nanoplankton: Plankton that Bouree, 1912, Fig. 49, p. 61. passes the net, but Library Call Number 525.8 B77. which is > 2 µm Ultrananoplankton: Plankton < 2µm Components of the Plankton (older scheme) Netplankton: Plankton that is retained on a net or screen, usually 20 - 100 µm Nanoplankton: Plankton that passes the net, but which is > 2 µm Ultrananoplankton: Plankton < 2µm Microzooplankton: Zooplankton in the microplankton (i.e., < 200 µm) Length Scales to Define Plankton Groups Sieburth, J. M., Smetacek, V. and Lenz, J. (1978). Pelagic ecosystem structure: Heterotrophic compartments of the plankton and their relationship to plankton size fractions. Limnol. Oceanogr. 23: 1256-1263. Terminology and Scales: -
SSWIMS: Plankton
Unit Six SSWIMS/Plankton Unit VI Science Standards with Integrative Marine Science-SSWIMS On the cutting edge… This program is brought to you by SSWIMS, a thematic, interdisciplinary teacher training program based on the California State Science Content Standards. SSWIMS is provided by the University of California Los Angeles in collaboration with the Los Angeles County school districts, including the Los Angeles Unified School District. SSWIMS is funded by a major grant from the National Science Foundation. Plankton Lesson Objectives: Students will be able to do the following: • Determine a basis for plankton classification • Differentiate between various plankton groups • Compare and contrast plankton adaptations for buoyancy Key concepts: phytoplankton, zooplankton, density, diatoms, dinoflagellates, holoplankton, meroplankton Plankton Introduction “Plankton” is from a Greek word for food chains. They are autotrophs, “wanderer.” It is a making their own food, using the collective term for process of photosynthesis. The the various animal plankton or zooplankton eat organisms that drift or food for energy. These swim weakly in the heterotrophs feed on the open water of the sea or microscopic freshwater lakes and ponds. These world of the weak swimmers, carried about by sea and currents, range in size from the transfer tiniest microscopic organisms to energy up much larger animals such as the food jellyfish. pyramid to fishes, marine mammals, and humans. Plankton can be divided into two large groups: planktonic plants and Scientists are interested in studying planktonic animals. The plant plankton, because they are the basis plankton or phytoplankton are the for food webs in both marine and producers of ocean and freshwater freshwater ecosystems. -
Collection and Analysis of a Global Marine Phytoplankton Primary
Discussions https://doi.org/10.5194/essd-2021-230 Earth System Preprint. Discussion started: 7 July 2021 Science c Author(s) 2021. CC BY 4.0 License. Open Access Open Data Collection and analysis of a global marine phytoplankton primary production dataset Franceso Mattei1,2,3, Michele Scardi1,2 1Department of Biology, University of Rome “Tor Vergata”, Via della Ricerca Scientifica (no street number), Rome, 00133, 5 Italy. 2CoNISMa, Piazzale Flaminio, 9, Rome, 00196, Italy. 3 Ph.D. Program in Evolutionary Biology and Ecology, Department of Biology, University of Rome Tor Vergata. Correspondence to: Francesco Mattei ([email protected]) Keywords: Phytoplankton primary production, Marine ecology, Global marine primary productivity. 10 Abstract. Phytoplankton primary production is a key oceanographic process. It has relationships with the marine food webs dynamics, the global carbon cycle and the Earth’s climate. The study of phytoplankton production on a global scale relies on indirect approaches due to field campaigns difficulties. Modelling approaches require in situ data for calibration and validation. In fact, the need for more phytoplankton primary production data was highlighted several times during the last decades. Most of the available primary production datasets are scattered in various repositories, reporting heterogeneous information 15 and missing records. We decided to retrieve field measurements of marine phytoplankton production from several sources and create a homogeneous and ready to use dataset. We handled missing data and added variables related to primary production which were not present in the original datasets. Subsequently, we performed a general analysis of the highlighting the relationships between the variables from a numerical and an ecological perspective. -
PHYTOPLANKTON Grass of The
S. G. No. 9 Oregon State University Extension Service Rev. December 1973 FIGURE 6: Oregon State Univer- sity's Marine Science Center in MARINE ADVISORY PROGRAM Newport, Oregon, is engaged in re- search, teaching, marine extension, and related activities under the Sea Grant Program of the National Oceanic and Atmospheric Adminis- tration. Located on Yaquina Bay, the center attracts thousands of visitors yearly to view the exhibits PHYTOPLANKTON of oceanographic phenomena and the aquaria of most of Oregon's marine fishes and invertebrates. Scientists studying the charac- grass of the sea teristics of life in the ocean (in- cluding phytoplankton) and in estu- aries work in various laboratories at the center. The Marine Science Center is home port for OSU School of Ocea- nography vessels, ranging in size from 180 to 33 feet (the 180-foot BY HERBERT CURL, JR. Yaquina and the 80-foot Cayuse PROFESSOR OF OCEANOGRAPHY are shown at the right). OREGON STATE UNIVERSITY Anyone taking a trip at sea or walking on the beach Want to Know More About Phytoplankton? Press, 1943—out of print; reprinted Ann Arbor: notices that nearshore water along coasts is frequently University Microfilms, Inc., University of Michigan). For the student or teacher who wishes to learn green or brown and sometimes even red. Often these more about phytoplankton, the following publications colors signify the presence of mud or silt carried into offer detailed information about phytoplankton and Want Other Marine Information? the sea by rivers or stirred up from the bottom if the their relationship to the ocean and mankind. Oregon State University's Extension Marine Advis- water is sufficiently shallow. -
Ocean Iron Fertilization Experiments – Past, Present, and Future Looking to a Future Korean Iron Fertilization Experiment in the Southern Ocean (KIFES) Project
Biogeosciences, 15, 5847–5889, 2018 https://doi.org/10.5194/bg-15-5847-2018 © Author(s) 2018. This work is distributed under the Creative Commons Attribution 3.0 License. Reviews and syntheses: Ocean iron fertilization experiments – past, present, and future looking to a future Korean Iron Fertilization Experiment in the Southern Ocean (KIFES) project Joo-Eun Yoon1, Kyu-Cheul Yoo2, Alison M. Macdonald3, Ho-Il Yoon2, Ki-Tae Park2, Eun Jin Yang2, Hyun-Cheol Kim2, Jae Il Lee2, Min Kyung Lee2, Jinyoung Jung2, Jisoo Park2, Jiyoung Lee1, Soyeon Kim1, Seong-Su Kim1, Kitae Kim2, and Il-Nam Kim1 1Department of Marine Science, Incheon National University, Incheon 22012, Republic of Korea 2Korea Polar Research Institute, Incheon 21990, Republic of Korea 3Woods Hole Oceanographic Institution, MS 21, 266 Woods Hold Rd., Woods Hole, MA 02543, USA Correspondence: Il-Nam Kim ([email protected]) Received: 2 November 2016 – Discussion started: 15 November 2016 Revised: 16 August 2018 – Accepted: 18 August 2018 – Published: 5 October 2018 Abstract. Since the start of the industrial revolution, hu- providing insight into mechanisms operating in real time and man activities have caused a rapid increase in atmospheric under in situ conditions. To maximize the effectiveness of carbon dioxide (CO2) concentrations, which have, in turn, aOIF experiments under international aOIF regulations in the had an impact on climate leading to global warming and future, we therefore suggest a design that incorporates sev- ocean acidification. Various approaches have been proposed eral components. (1) Experiments conducted in the center of to reduce atmospheric CO2. The Martin (or iron) hypothesis an eddy structure when grazing pressure is low and silicate suggests that ocean iron fertilization (OIF) could be an ef- levels are high (e.g., in the SO south of the polar front during fective method for stimulating oceanic carbon sequestration early summer).