A Case of Partial 5Q Trisomy Associated with Partial 7Q Monosomy
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Identification and Characterization of a Novel 43-Bp Deletion Mutation of The
Liu et al. BMC Medical Genetics (2018) 19:61 https://doi.org/10.1186/s12881-018-0567-z CASE REPORT Open Access Identification and characterization of a novel 43-bp deletion mutation of the ATP7B gene in a Chinese patient with Wilson’s disease: a case report Gang Liu†, Dingyuan Ma†, Jian Cheng, Jingjing Zhang, Chunyu Luo, Yun Sun, Ping Hu, Yuguo Wang, Tao Jiang* and Zhengfeng Xu* Abstract Background: Wilson’s disease (WD) is an autosomal recessive disorder characterized by copper accumulation. ATP7B gene mutations lead to ATP7B protein dysfunction, which in turn causes Wilson’s disease. Case presentation: We describe a male case of Wilson’s disease diagnosed at 10 years after routine biochemical test that showed low serum ceruloplasmin levels and Kayser–Fleischer rings in both corneas. Analysis of the ATP7B gene revealed compound heterozygous mutations in the proband, including the reported c.3517G > A mutation and a novel c.532_574del mutation. The c.532_574del mutation covered a 43-bp region in exon 2, and resulted in a frameshift mutation (p.Leu178PhefsX10). By base sequence analysis, two microhomologies (TCTCA) were observed on both deletion breakpoints in the ATP7B gene. Meanwhile, the presence of some sequence motifs associated with DNA breakage near the deletion region promoted DNA strand break. Conclusions: By comparison, a replication-based mechanism named fork stalling and template switching/ microhomology-mediated break-induced replication (FoSTeS/MMBIR) was used to explain the formation of this novel deletion mutation. Keywords: Wilson’s disease, ATP7B, Novel mutation, FoSTeS/MMBIR Background ATP7B protein dysfunction, which in turn causes accumu- Wilson’s disease (WD, OMIM #277900), an autosomal lation of copper in the liver, brain, kidneys and corneas, recessive disorder characterized by abnormal copper ac- with a wide range of clinical symptoms, including hepatic cumulation and related toxicities, is caused by mutations disorders, neuronal degeneration of the brain, and Kayser- in the ATP7B gene (OMIM *606882) [1]. -
Monosomy X Turner Syndrome Information for Patients
Monosomy X Turner syndrome Information for patients The healthcare professional responsible for your care has given you this leaflet because you have been identified by the Harmony® Prenatal Test as having a high probability of a chromosome disorder in your pregnancy. This fact sheet contains more information about the particular genetic disorder mentioned in your Harmony report. We recommend that you also discuss your result with an experienced doctor or genetic counsellor. Turner syndrome, or Monosomy X, is a sex chromosome disorder that occurs in females when there is only one copy of the X chromosome instead of the expected two (Figure 1). It occurs in at least one in every 2,500 female births. Monosomy X may be associated with an increased risk of miscarriage in the first or second trimester. More than half of those withT urner syndrome will be mosaic, meaning some of their cells have just one X chromosome and the other cells have two X chromosomes. Features and symptoms of Turner syndrome include subtle changes in physical appearance, short stature, infertility and learning difficulties, as well as some potential health conditions, including cardiac conditions, hypothyroidism, diabetes and autoimmune disease. Babies who are born with Turner syndrome could have a number of the features and symptoms of the syndrome, however, not everyone will have them all and severity will vary significantly. Mosaicism also plays a role in the varied severity of the syndrome. Although there is no cure for Turner syndrome, many of the associated symptoms can be treated. Girls with Turner syndrome may need regular health checks of their heart, kidneys and reproductive system throughout their lives. -
Nf1 Gene Deletion
NF1 GENE DELETION NF1 GENE DELETION This resource is for families who have a deletion of the NF1 gene causing neurofi bromatosis type 1 (NF1). This is also referred to as NF1 microdeletion. WHAT ARE CHROMOSOMES, DELETION GENES AND MUTATIONS? Chromosomes are the packages of our genetic information. Within each cell of the body are 46 chromosomes arranged in 23 pairs. One chromosome in each pair is inherited from the Source: U.S. National Library of Medicine mother and the other from the father. The pairs are numbered WHAT IS AN NF1 MICRODELETION? by size. The number 1 chromosome When the entire NF1 gene is missing, it is referred pair is the largest and the number 22 is to as NF1 gene deletion or NF1 microdeletion. the smallest. The last pair of chromosomes Approximately 5% of individuals with a diagnosis (sex chromosomes) help to determine whether of NF1 have a deletion that includes the entire NF1 an individual is a male or a female. Genes are gene. Other than the NF1 gene, there are usually small areas along the chromosomes, and are other nearby genes that are also missing. the body’s blueprints or instructions. We have approximately 20,000 genes that control how we WHAT DOES IT MEAN TO HAVE AN NF1 grow and develop and what we look like. Each MICRODELETION? gene can be thought of as a sentence made up of In addition to the NF1 gene, individuals with NF1 four letters (A, T, C and G). Mutations (also called microdeletion typically have other genes in the pathogenic variants), are changes in a gene’s region of chromosome 17 deleted. -
Status of the P53, P16, RB1, and HER-2 Genes and Chromosomes 3
367 ORIGINAL ARTICLE J Clin Pathol: first published as 10.1136/jcp.2004.021154 on 24 March 2005. Downloaded from Status of the p53, p16, RB1, and HER-2 genes and chromosomes 3, 7, 9, and 17 in advanced bladder cancer: correlation with adjacent mucosa and pathological parameters M Gallucci, F Guadagni, R Marzano, C Leonardo, R Merola, S Sentinelli, E M Ruggeri, R Cantiani, I Sperduti, F de la Iglesia Lopez, A M Cianciulli ............................................................................................................................... J Clin Pathol 2005;58:367–371. doi: 10.1136/jcp.2004.021154 Aims: To evaluate a panel of well known genetic alterations for frequency of changes in bladder cancer that could be considered genomic instability determinants or adjunctive prognostic predictors. Methods: Fluorescence in situ hybridisation analysis was performed to evaluate chromosomes 3, 7, 9, and 17 and the 9p21 (p16), 17p13.1 (p53), 13q14 (RB1), and 17q11.2 (HER-2) chromosomal loci in 48 See end of article for muscle invasive bladder cancer specimens and the adjacent normal mucosa. authors’ affiliations Results: There were significant differences between the frequency of chromosome 7 monosomy/polysomy ....................... and 17 monosomy in the two groups (tumours and adjacent mucosa) (p = 0.004, p = 0.037, and Correspondence to: p = 0.015, respectively). There were no differences in the frequency of gene deletions between tumours Dr A M Cianciulli, Clinical and the adjacent mucosa. 17q11.2 amplification was found in 14.5% of tumours examined, but not in the Pathology, Regina Elena non-malignant epithelium. Chromosome 3, 7, and 17 monosomy and the RB1 heterozygous deletion were Cancer Institute, IFO, Via Elio Chianesi, 53, 00144 significantly associated with stage T3–4 (p = 0.03, p = 0.04, p = 0.04, and p = 0.03, respectively). -
Chromosome 18
Chromosome 18 Description Humans normally have 46 chromosomes in each cell, divided into 23 pairs. Two copies of chromosome 18, one copy inherited from each parent, form one of the pairs. Chromosome 18 spans about 78 million DNA building blocks (base pairs) and represents approximately 2.5 percent of the total DNA in cells. Identifying genes on each chromosome is an active area of genetic research. Because researchers use different approaches to predict the number of genes on each chromosome, the estimated number of genes varies. Chromosome 18 likely contains 200 to 300 genes that provide instructions for making proteins. These proteins perform a variety of different roles in the body. Health Conditions Related to Chromosomal Changes The following chromosomal conditions are associated with changes in the structure or number of copies of chromosome 18. Distal 18q deletion syndrome Distal 18q deletion syndrome occurs when a piece of the long (q) arm of chromosome 18 is missing. The term "distal" means that the missing piece (deletion) occurs near one end of the chromosome arm. The signs and symptoms of distal 18q deletion syndrome include delayed development and learning disabilities, short stature, weak muscle tone ( hypotonia), foot abnormalities, and a wide variety of other features. The deletion that causes distal 18q deletion syndrome can occur anywhere between a region called 18q21 and the end of the chromosome. The size of the deletion varies among affected individuals. The signs and symptoms of distal 18q deletion syndrome are thought to be related to the loss of multiple genes from this part of the long arm of chromosome 18. -
The Mutational Landscape of Myeloid Leukaemia in Down Syndrome
cancers Review The Mutational Landscape of Myeloid Leukaemia in Down Syndrome Carini Picardi Morais de Castro 1, Maria Cadefau 1,2 and Sergi Cuartero 1,2,* 1 Josep Carreras Leukaemia Research Institute (IJC), Campus Can Ruti, 08916 Badalona, Spain; [email protected] (C.P.M.d.C); [email protected] (M.C.) 2 Germans Trias i Pujol Research Institute (IGTP), Campus Can Ruti, 08916 Badalona, Spain * Correspondence: [email protected] Simple Summary: Leukaemia occurs when specific mutations promote aberrant transcriptional and proliferation programs, which drive uncontrolled cell division and inhibit the cell’s capacity to differentiate. In this review, we summarize the most frequent genetic lesions found in myeloid leukaemia of Down syndrome, a rare paediatric leukaemia specific to individuals with trisomy 21. The evolution of this disease follows a well-defined sequence of events and represents a unique model to understand how the ordered acquisition of mutations drives malignancy. Abstract: Children with Down syndrome (DS) are particularly prone to haematopoietic disorders. Paediatric myeloid malignancies in DS occur at an unusually high frequency and generally follow a well-defined stepwise clinical evolution. First, the acquisition of mutations in the GATA1 transcription factor gives rise to a transient myeloproliferative disorder (TMD) in DS newborns. While this condition spontaneously resolves in most cases, some clones can acquire additional mutations, which trigger myeloid leukaemia of Down syndrome (ML-DS). These secondary mutations are predominantly found in chromatin and epigenetic regulators—such as cohesin, CTCF or EZH2—and Citation: de Castro, C.P.M.; Cadefau, in signalling mediators of the JAK/STAT and RAS pathways. -
Adult Acute Myeloid Leukemia with Trisomy 11 As the Sole Abnormality
Letters to the Editor 2254 Adult acute myeloid leukemia with trisomy 11 as the sole abnormality is characterized by the presence of five distinct gene mutations: MLL-PTD, DNMT3A, U2AF1, FLT3-ITD and IDH2 Leukemia (2016) 30, 2254–2258; doi:10.1038/leu.2016.196 sequencing approach at the DNA level were also analyzed at the RNA level by visual inspection of the BAM files. The clinical characteristics and outcomes of 23 patients with Trisomy of chromosome 11 (+11) is the second most common sole +11 are summarized in Table 1. The patients were isolated trisomy in acute myeloid leukemia (AML) patients.1 The presence of +11 is associated with intermediate2,3 or poor 4–6 Table 1. Pretreatment clinical and molecular characteristics and patient outcomes. Whereas the clinical characteristics of solitary outcome of patients with acute myeloid leukemia (AML) and sole +11 +11 have been well established,4–6 relatively little is known about the mutational landscape of sole +11 AML in the age of next- Characteristica Sole +11 AML (n = 23) generation sequencing techniques that allow examination of multiple genes relevant to AML pathogenesis.6 So far, the most Age, years Median 71 common molecular feature in AML with isolated +11 is the – presence of a partial tandem duplication of the MLL (KMT2A) gene Range 25 84 (MLL-PTD), which is detectable in up to 90% of patients.7 Age group, n (%) Furthermore, a frequent co-occurrence of the FLT3 internal o60 years 18 (78) tandem duplication (FLT3-ITD) with MLL-PTD has been reported.8 ⩾ 60 years 5 (22) The aim of our study was to better characterize the mutational Female sex, n (%) 5 (22) landscape of adult AML patients with sole +11. -
Koolen-De Vries Syndrome: Clinical Report of an Adult and Literature Review
Case Report Cytogenet Genome Res 2016;150:40–45 Accepted: July 25, 2016 DOI: 10.1159/000452724 by M. Schmid Published online: November 17, 2016 Koolen-de Vries Syndrome: Clinical Report of an Adult and Literature Review Claudia Ciaccio Chiara Dordoni Marco Ritelli Marina Colombi Division of Biology and Genetics, Department of Molecular and Translational Medicine, School of Medicine, University of Brescia, Brescia , Italy Key Words Koolen-de Vries syndrome (KdS, also known as 17q21.31 · Deletion · Joint hypermobility · KANSL1 17q21.31 microdeletion syndrome, OMIM #610443) is a rare genetic disorder (prevalence 1/16,000) characterized by typical facial dysmorphisms, cardiac and renal defects, Abstract developmental delay, and intellectual disability of vari- Koolen-de Vries syndrome (KdS) is a rare genetic condition able level [Tan et al., 2009]. The disorder was initially de- characterized by typical facial dysmorphisms, cardiac and re- scribed as a form of mental retardation caused by a 440– nal defects, skeletal anomalies, developmental delay, and in- 680-kb deletion in the 17q21.31 region, typically encom- tellectual disability of variable level. It is caused by a 440– passing 5 genes: CRHR1 (OMIM 122561), MAPT 680-kb deletion in the 17q21.31 region, encompassing (OMIM 157140), IMP5 (OMIM 608284), STH (OMIM CRHR1 , MAPT , IMP5 , STH , and KANSL1 , or by an intragenic 607067), and KANSL1 (OMIM 612452)* [Koolen et al., KANSL1 mutation. The majority of the patients reported are 2006]. Recently,* it has been shown* that haploinsufficien- pediatric or young adults, and long-term studies able to de- cy* of KANSL1 by itself, due to single* nucleotide variants fine the prognosis of the disease are lacking. -
Trisomy 5P Inverted Duplication & Deletion of 5Pftnwdraft3
Trisomy 5p: Inverted duplication and deletion of 5p rarechromo.org Inverted duplication with deletion of 5p Inverted duplication with deletion of 5p, known as inv dup del 5p, is a very rare genetic condition in which there is an extra copy of part of the genetic material (DNA) that makes up the body’s 46 chromosomes, and a missing copy of another part. Like most other chromosome disorders, this usually affects development, and sometimes health and behaviour as well. It is likely that both the extra and missing parts of chromosome 5p have an effect, but a lot depends on their position and size. The precise effects of gaining material from a chromosome vary depending on how large the duplication is, how many genes it contains and what those genes do. The same applies to deletions. The effects may not be limited to the genes within the duplicated or deleted piece of chromosome because these genes may interact with other genes on the same chromosome or other chromosomes. Chromosomes usually come in pairs, and we inherit one chromosome from each parent. Of the 46 chromosomes, two are a pair of sex chromosomes: two Xs for a girl and an X and a Y for a boy. The remaining 44 chromosomes are grouped into 22 pairs and are numbered 1 to 22, approximately from largest to smallest. Each chromosome has a short (p) arm (from petit, the French for small) and a long (q) arm. The diagram below shows the short arm. Chromosome 5 Short (p) arm Bands Base pairs 0Mb 5Mb 10Mb 15Mb 20Mb 25Mb 30Mb 35Mb 40Mb 45Mb 48.4Mb Long (q) arm 2 People have 2 copies of chromosome 5 in most of their body cells. -
ABC of Clinical Genetics CHROMOSOMAL DISORDERS II
ABC of Clinical Genetics CHROMOSOMAL DISORDERS II BMJ: first published as 10.1136/bmj.298.6676.813 on 25 March 1989. Downloaded from Helen M Kingston Developmental delay in Chromosomal abnormalities are generally associated with multiple child with deletion of congenital malformations and mental retardation. Children with more than chromosome 13. one physical abnormality, particularly ifretarded, should therefore undergo chromosomal analysis as part of their investigation. Chromosomal disorders are incurable but can be reliably detected by prenatal diagnostic techniques. Amniocentesis or chorionic villus sampling should be offered to women whose pregnancies are at increased risk-namely, women in their mid to late thirties, couples with an affected child, and couples in whom one partner carries a balanced translocation. Unfortunately, when there is no history of previous abnormality the risk in many affected pregnancies cannot be predicted beforehand. Autosomal abnormalities Parents Non-dysjunction Trisomy 21 (Down's syndrome) Down's syndrome is the commonest autosomal Gametes trisomy, the incidence in liveborn infants being one in 650, although more than half of conceptions with trisomy 21 do not survive to term. Affected children have a characteristic Offspring facial appearance, are mentally retarded, and Trisomy 21 often die young. They may have associated Non-dysjunction of chromosome 21 leading to Down's syndrome. congenital heart disease and are at increased risk recurrent for infections, atlantoaxial instability, http://www.bmj.com/ -- All chromosomal abnormalities at and acute leukaemia. They are often happy and 100 - ainniocentesis ---- Downl's syndrome at amniocentesis Risk for trisomy 21 in liveborn infants affectionate children who are easy to manage. -
Dr. Fern Tsien, Dept. of Genetics, LSUHSC, NO, LA Down Syndrome
COMMON TYPES OF CHROMOSOME ABNORMALITIES Dr. Fern Tsien, Dept. of Genetics, LSUHSC, NO, LA A. Trisomy: instead of having the normal two copies of each chromosome, an individual has three of a particular chromosome. Which chromosome is trisomic determines the type and severity of the disorder. Down syndrome or Trisomy 21, is the most common trisomy, occurring in 1 per 800 births (about 3,400) a year in the United States. It is one of the most common genetic birth defects. According to the National Down Syndrome Society, there are more than 400,000 individuals with Down syndrome in the United States. Patients with Down syndrome have three copies of their 21 chromosomes instead of the normal two. The major clinical features of Down syndrome patients include low muscle tone, small stature, an upward slant to the eyes, a single deep crease across the center of the palm, mental retardation, and physical abnormalities, including heart and intestinal defects, and increased risk of leukemia. Every person with Down syndrome is a unique individual and may possess these characteristics to different degrees. Down syndrome patients Karyotype of a male patient with trisomy 21 What are the causes of Down syndrome? • 95% of all Down syndrome patients have a trisomy due to nondisjunction before fertilization • 1-2% have a mosaic karyotype due to nondisjunction after fertilization • 3-4% are due to a translocation 1. Nondisjunction refers to the failure of chromosomes to separate during cell division in the formation of the egg, sperm, or the fetus, causing an abnormal number of chromosomes. As a result, the baby may have an extra chromosome (trisomy). -
Early Fetal Presentation of Koolen-De Vries: Case Report with Literature Review
European Journal of Medical Genetics xxx (2017) 1e5 Contents lists available at ScienceDirect European Journal of Medical Genetics journal homepage: http://www.elsevier.com/locate/ejmg Early fetal presentation of Koolen-de Vries: Case report with literature review abstract Keywords: Koolen-de Vries syndrome (MIM#610443) is a rare microdeletion syndrome involving the 17q21.31 Koolen-de Vries syndrome region, which was first described by Koolen in 2006. Clinical and behavioral characteristics have been 17q21.31 deletion extensively reported from more than 100 postnatal cases including infants, children and young adults. Prenatal array-CGH The syndrome is highly clinically heterogeneous, but the main features associate characteristic cranio- Neuropathology facial dysmorphism, heart defects, limb, skeletal, genito-urinary anomalies, along with intellectual Cytogenetics Mega corpus callosum disability with early childhood epilepsy and behavioral disturbances. Central nervous system malfor- mations usually consist in hydrocephalus and thin corpus callosum. We report herein an early fetal case with an apparently isolated abnormal corpus callosum diagnosed by ultrasonography, for which a medical termination of the pregnancy was achieved at 22 weeks of gestation. Postmortem examination displayed facial dysmorphism consisting of hypertelorism, short philtrum and flat and broad nose, cleft palate and left duplex ureter. Neuropathological examination revealed a mega corpus callosum that has never been reported so far in this syndrome. Array-CGH performed