The First European Cultivated Plant Taxonomists Forum
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Glossary - Cellbiology
1 Glossary - Cellbiology Blotting: (Blot Analysis) Widely used biochemical technique for detecting the presence of specific macromolecules (proteins, mRNAs, or DNA sequences) in a mixture. A sample first is separated on an agarose or polyacrylamide gel usually under denaturing conditions; the separated components are transferred (blotting) to a nitrocellulose sheet, which is exposed to a radiolabeled molecule that specifically binds to the macromolecule of interest, and then subjected to autoradiography. Northern B.: mRNAs are detected with a complementary DNA; Southern B.: DNA restriction fragments are detected with complementary nucleotide sequences; Western B.: Proteins are detected by specific antibodies. Cell: The fundamental unit of living organisms. Cells are bounded by a lipid-containing plasma membrane, containing the central nucleus, and the cytoplasm. Cells are generally capable of independent reproduction. More complex cells like Eukaryotes have various compartments (organelles) where special tasks essential for the survival of the cell take place. Cytoplasm: Viscous contents of a cell that are contained within the plasma membrane but, in eukaryotic cells, outside the nucleus. The part of the cytoplasm not contained in any organelle is called the Cytosol. Cytoskeleton: (Gk. ) Three dimensional network of fibrous elements, allowing precisely regulated movements of cell parts, transport organelles, and help to maintain a cell’s shape. • Actin filament: (Microfilaments) Ubiquitous eukaryotic cytoskeletal proteins (one end is attached to the cell-cortex) of two “twisted“ actin monomers; are important in the structural support and movement of cells. Each actin filament (F-actin) consists of two strands of globular subunits (G-Actin) wrapped around each other to form a polarized unit (high ionic cytoplasm lead to the formation of AF, whereas low ion-concentration disassembles AF). -
Liliaceae S.L. (Lily Family)
Liliaceae s.l. (Lily family) Photo: Ben Legler Photo: Hannah Marx Photo: Hannah Marx Lilium columbianum Xerophyllum tenax Trillium ovatum Liliaceae s.l. (Lily family) Photo: Yaowu Yuan Fritillaria lanceolata Ref.1 Textbook DVD KRR&DLN Erythronium americanum Allium vineale Liliaceae s.l. (Lily family) Herbs; Ref.2 Stems often modified as underground rhizomes, corms, or bulbs; Flowers actinomorphic; 3 sepals and 3 petals or 6 tepals, 6 stamens, 3 carpels, ovary superior (or inferior). Tulipa gesneriana Liliaceae s.l. (Lily family) “Liliaceae” s.l. (sensu lato: “in the broad sense”) - Lily family; 288 genera/4950 species, including Lilium, Allium, Trillium, Tulipa; This family is treated in a very broad sense in this class, as in the Flora of the Pacific Northwest. The “Liliaceae” s.l. taught in this class is not monophyletic. It is apparent now that the family should be treated in a narrower sense and some of the members should form their own families. Judd et al. recognize 15+ families: Agavaceae, Alliaceae, Amarylidaceae, Asparagaceae, Asphodelaceae, Colchicaceae, Dracaenaceae (Nolinaceae), Hyacinthaceae, Liliaceae, Melanthiaceae, Ruscaceae, Smilacaceae, Themidaceae, Trilliaceae, Uvulariaceae and more!!! (see web reading “Consider the Lilies”) Iridaceae (Iris family) Photo: Hannah Marx Photo: Hannah Marx Iris pseudacorus Iridaceae (Iris family) Photo: Yaowu Yuan Photo: Yaowu Yuan Sisyrinchium douglasii Sisyrinchium sp. Iridaceae (Iris family) Iridaceae - 78 genera/1750 species, Including Iris, Gladiolus, Sisyrinchium. Herbs, aquatic or terrestrial; Underground stems as rhizomes, bulbs, or corms; Leaves alternate, 2-ranked and equitant Ref.3 (oriented edgewise to the stem; Gladiolus italicus Flowers actinomorphic or zygomorphic; 3 sepals and 3 petals or 6 tepals; Stamens 3; Ovary of 3 fused carpels, inferior. -
Scientific Name Common Name Plant Type Plant Form References at Bottom
Diablo Firesafe Council The following list of plants contains those found in the references that were recommended for use in fire prone environments by at least 3 references. All of the plants listed here were given either a high or moderate fire resistance rating in the references where a rating was assigned, or found listed in the references that categorized plants as fire resistant without assigning a degree of resistance. In most cases, the terms used in the ranking were not defined, and if they were, there is no agreed upon standard definition. For this reason, the plants are listed in this chapter without any attempt to rank them. The list is sorted by plant form -- groundcovers, shrubs, trees, etc. Some species may appear twice (e.g. once as a groundcover and then again as a shrub) because they have properties attributed to both forms. For a complete description of the plant, including its mature characteristics, climate zones, and information on erosion control and drought tolerance, please refer to Chapter 4, the landscape vegetation database. It is important to note that a plant's fire performance can be seriously compromised if not maintained. Plants that are not properly irrigated or pruned, or that are planted in climate areas not generally recommended for the plant, will have increased fire risk and will likely make the mature plant undesirable for landscaping in high fire hazard zones. Table 1. Plants with a favorable fire performance rating in 3 or more references. Some plants may have invasive (indicated as ), or other negative characteristics that should be considered before being selected for use in parts of California. -
Shrub Swamp State Rank: S5 - Secure
Shrub Swamp State Rank: S5 - Secure cover of tall shrubs with Shrub Swamp Communities are a well decomposed organic common and variable type of wetlands soils. If highbush occurring on seasonally or temporarily blueberries are dominant flooded soils; They are often found in the transition zone between emergent the community is likely to marshes and swamp forests; be a Highbush Blueberry Thicket, often occurring on stunted trees. The herbaceous layer of peat. Acidic Shrub Fens are shrub swamps is often sparse and species- peatlands, dominated by poor. A mixture of species might typically low growing shrubs, along include cinnamon, sensitive, royal, or with sphagnum moss and marsh fern, common arrowhead, skunk herbaceous species of Shrub Swamp along shoreline. Photo: Patricia cabbage, sedges, bluejoint grass, bur-reed, varying abundance. Deep Serrentino, Consulting Wildlife Ecologist. swamp candles, clearweed, and Emergent Marshes and Description: Wetland shrubs dominate turtlehead. Invasive species include reed Shallow Emergent Marshes Cottontail, have easy access to the shrubs Shrub Swamps. Shrub height may be from canary grass, glossy alder-buckthorn, are graminoid dominated wetlands with and protection in the dense thickets. The <1m to 5 meters, of uniform height or common buckthorn, and purple <25% cover of tall shrubs. Acidic larvae of many rare and common moth mixed. Shrub density can be variable, loosestrife. Pondshore/Lakeshore Communities are species feed on a variety of shrubs and from dense (>75% cover) to fairly open broadly defined, variable shorelines associated herbaceous plants in shrub (25-75% cover) with graminoid, around open water. Shorelines often swamps throughout Massachusetts. herbaceous, or open water areas between merge into swamps or marshes. -
Revised Glossary for AQA GCSE Biology Student Book
Biology Glossary amino acids small molecules from which proteins are A built abiotic factor physical or non-living conditions amylase a digestive enzyme (carbohydrase) that that affect the distribution of a population in an breaks down starch ecosystem, such as light, temperature, soil pH anaerobic respiration respiration without using absorption the process by which soluble products oxygen of digestion move into the blood from the small intestine antibacterial chemicals chemicals produced by plants as a defence mechanism; the amount abstinence method of contraception whereby the produced will increase if the plant is under attack couple refrains from intercourse, particularly when an egg might be in the oviduct antibiotic e.g. penicillin; medicines that work inside the body to kill bacterial pathogens accommodation ability of the eyes to change focus antibody protein normally present in the body acid rain rain water which is made more acidic by or produced in response to an antigen, which it pollutant gases neutralises, thus producing an immune response active site the place on an enzyme where the antimicrobial resistance (AMR) an increasing substrate molecule binds problem in the twenty-first century whereby active transport in active transport, cells use energy bacteria have evolved to develop resistance against to transport substances through cell membranes antibiotics due to their overuse against a concentration gradient antiretroviral drugs drugs used to treat HIV adaptation features that organisms have to help infections; they -
A Copy of the Plant Nomenclature
Title 190 – National Plant Materials Manual Part 542 – Acronyms 542.2 Plant Nomenclature The scientific, or Latin, names of plants, both wild and cultivated are formulated and written according to rules governed by the International Code of Botanical Nomenclature, July 2005 (Vienna Code). Distinguishable groups of cultivated plants, whose origin or selection is due primarily to mankind, are given epithets (i.e., names, such as cultivar names) formed according to the rules and provisions of the International Code of Nomenclature for Cultivated Plants, February 2004. The aim of these codes is to promote uniformity, accuracy and stability in formulating the scientific names of all plants (Botanical Code) and in formulating the cultivar names of agricultural, forestry, and horticultural plants (Cultivated Plant Code). The following text is adapted from these two Codes. Genus and Species Names Plant names may include a genus, specific epithet, a name rank below species (such as a subspecies and/or botanical variety), Latin name authorities, and the cultivar or release name. The genus, species, and variety or subspecies names are always italicized or underlined. Authorities should always be included with the Latin name the first time the plant name is used. A scientific plant name may be written in either of the following ways: Ammophila breviligulata Fern. OR Ammophila breviligulata Fern. Hybrid Names Validly published hybrid names are signified by the symbol “x” and are not italicized. Hybrids at the generic level are written with an “x” immediately prior to the genus name, such as in the following example: xElyleymus colvillensis (Lepage) Barkworth For a hybrid at the species level an “x” is placed immediately prior to the specific epithet, as in this example: Quercus xdeamii Trel. -
Zygolum Louisendorf Grex 'Rhein Moonlight' AM
Zygopetalum Alliance Presentation Sales List Zygopetalum Artur Elle ‘Tombstone’ Zygopetalum Blackii x B.G. White JUNE EVENT A seminalMonthlygrex in Meeting:Zygopetalums, 8 p.m.Z. Artur Monday,Elle has Junebeen 8,an 2020immensely important parent used in some of the finest pure Zygos and intergenerics available. This clone, selected and used in Hawaii for its free-blooming qualities, producesFromtall thespikes comfortof long of-lasting your flowersliving roomwith a viascent Zoom!of pepper and hyacinth. Although it has not yet been awarded, it is definitely awardable. Tim Culbertson on New Directions in Zygopetalums Bulletin There will be a mini-auction before the meeting, starting at 7:30 June 2020 DetailsZygolum of Zoom meetingLouisendorf & auction will be emailedGrex a few days ‘Rheinbefore the meeting Moonlight’ AM/AOS Zygosepalum labiosum x Zygopetalum Artur Elle Letter from the President I hope this letter finds you happy and healthy throughout this crazy COVID confinement. This pandemic is affecting our Atlanta Orchid Society on multiple fronts. It has slashed our annual fund- raising and our ability to reach out and grow our membership because of the social distancing requirements. I’m sad to say that our annual ABG Behind-the- Scene Greenhouse Tour and Ice Cream Social has been cancelled for July to protect the safety of our members. Stay Made by Hoosier Orchids in 2004, this lovely flower shows the benefits of using the rarely seen Zspm. labiosum tuned for the status of our August meet- New Directions in Zygopetalums ing—we’ll be following the recommend- to produce novel color combinations, vastly reduced plant size, and increased frequency of flowering. -
Introduction to Bacteriology and Bacterial Structure/Function
INTRODUCTION TO BACTERIOLOGY AND BACTERIAL STRUCTURE/FUNCTION LEARNING OBJECTIVES To describe historical landmarks of medical microbiology To describe Koch’s Postulates To describe the characteristic structures and chemical nature of cellular constituents that distinguish eukaryotic and prokaryotic cells To describe chemical, structural, and functional components of the bacterial cytoplasmic and outer membranes, cell wall and surface appendages To name the general structures, and polymers that make up bacterial cell walls To explain the differences between gram negative and gram positive cells To describe the chemical composition, function and serological classification as H antigen of bacterial flagella and how they differ from flagella of eucaryotic cells To describe the chemical composition and function of pili To explain the unique chemical composition of bacterial spores To list medically relevant bacteria that form spores To explain the function of spores in terms of chemical and heat resistance To describe characteristics of different types of membrane transport To describe the exact cellular location and serological classification as O antigen of Lipopolysaccharide (LPS) To explain how the structure of LPS confers antigenic specificity and toxicity To describe the exact cellular location of Lipid A To explain the term endotoxin in terms of its chemical composition and location in bacterial cells INTRODUCTION TO BACTERIOLOGY 1. Two main threads in the history of bacteriology: 1) the natural history of bacteria and 2) the contagious nature of infectious diseases, were united in the latter half of the 19th century. During that period many of the bacteria that cause human disease were identified and characterized. 2. Individual bacteria were first observed microscopically by Antony van Leeuwenhoek at the end of the 17th century. -
GENOME EVOLUTION in MONOCOTS a Dissertation
GENOME EVOLUTION IN MONOCOTS A Dissertation Presented to The Faculty of the Graduate School At the University of Missouri In Partial Fulfillment Of the Requirements for the Degree Doctor of Philosophy By Kate L. Hertweck Dr. J. Chris Pires, Dissertation Advisor JULY 2011 The undersigned, appointed by the dean of the Graduate School, have examined the dissertation entitled GENOME EVOLUTION IN MONOCOTS Presented by Kate L. Hertweck A candidate for the degree of Doctor of Philosophy And hereby certify that, in their opinion, it is worthy of acceptance. Dr. J. Chris Pires Dr. Lori Eggert Dr. Candace Galen Dr. Rose‐Marie Muzika ACKNOWLEDGEMENTS I am indebted to many people for their assistance during the course of my graduate education. I would not have derived such a keen understanding of the learning process without the tutelage of Dr. Sandi Abell. Members of the Pires lab provided prolific support in improving lab techniques, computational analysis, greenhouse maintenance, and writing support. Team Monocot, including Dr. Mike Kinney, Dr. Roxi Steele, and Erica Wheeler were particularly helpful, but other lab members working on Brassicaceae (Dr. Zhiyong Xiong, Dr. Maqsood Rehman, Pat Edger, Tatiana Arias, Dustin Mayfield) all provided vital support as well. I am also grateful for the support of a high school student, Cady Anderson, and an undergraduate, Tori Docktor, for their assistance in laboratory procedures. Many people, scientist and otherwise, helped with field collections: Dr. Travis Columbus, Hester Bell, Doug and Judy McGoon, Julie Ketner, Katy Klymus, and William Alexander. Many thanks to Barb Sonderman for taking care of my greenhouse collection of many odd plants brought back from the field. -
American Bamboo Society
$5.00 AMERICAN BAMBOO SOCIETY Bamboo Species Source List No. 34 Spring 2014 This is the thirty-fourth year that the American Bamboo Several existing cultivar names are not fully in accord with Society (ABS) has compiled a Source List of bamboo plants requirements for naming cultivars. In the interests of and products. The List includes more than 510 kinds nomenclature stability, conflicts such as these are overlooked (species, subspecies, varieties, and cultivars) of bamboo to allow continued use of familiar names rather than the available in the US and Canada, and many bamboo-related creation of new ones. The Source List editors reserve the products. right to continue recognizing widely used names that may not be fully in accord with the International Code of The ABS produces the Source List as a public service. It is Nomenclature for Cultivated Plants (ICNCP) and to published on the ABS website: www.Bamboo.org . Copies are recognize identical cultivar names in different species of the sent to all ABS members and can also be ordered from ABS same genus as long as the species is stated. for $5.00 postpaid. Some ABS chapters and listed vendors also sell the Source List. Please see page 3 for ordering Many new bamboo cultivars still require naming, description, information and pages 50 and following for more information and formal publication. Growers with new cultivars should about the American Bamboo Society, its chapters, and consider publishing articles in the ABS magazine, membership application. “Bamboo.” Among other requirements, keep in mind that new cultivars must satisfy three criteria: distinctiveness, The vendor sources for plants, products, and services are uniformity, and stability. -
Developmental Regulation of the Expression of Amaryllidaceae Alkaloid Biosynthetic Genes in Narcissus Papyraceus
G C A T T A C G G C A T genes Article Developmental Regulation of the Expression of Amaryllidaceae Alkaloid Biosynthetic Genes in Narcissus papyraceus Tarun Hotchandani 1, Justine de Villers 1 and Isabel Desgagné-Penix 1,2,* 1 Department of Chemistry, Biochemistry and Physics, Université du Québec à Trois-Rivières, 3351 boulevard des Forges, Trois-Rivières, QC G9A 5H7, Canada 2 Plant Biology Research Group, Trois-Rivières, QC G9A 5H7, Canada * Correspondence: [email protected]; Tel.: +1-819-376-5011 Received: 6 July 2019; Accepted: 5 August 2019; Published: 7 August 2019 Abstract: Amaryllidaceae alkaloids (AAs) have multiple biological effects, which are of interest to the pharmaceutical industry. To unleash the potential of Amaryllidaceae plants as pharmaceutical crops and as sources of AAs, a thorough understanding of the AA biosynthetic pathway is needed. However, only few enzymes in the pathway are known. Here, we report the transcriptome of AA-producing paperwhites (Narcissus papyraceus Ker Gawl). We present a list of 21 genes putatively encoding enzymes involved in AA biosynthesis. Next, a cDNA library was created from 24 different samples of different parts at various developmental stages of N. papyraceus. The expression of AA biosynthetic genes was analyzed in each sample using RT-qPCR. In addition, the alkaloid content of each sample was analyzed by HPLC. Leaves and flowers were found to have the highest abundance of heterocyclic compounds, whereas the bulb, the lowest. Lycorine was also the predominant AA. The gene expression results were compared with the heterocyclic compound profiles for each sample. In some samples, a positive correlation was observed between the gene expression levels and the amount of compounds accumulated. -
Anatomy and Go Fish! Background
Anatomy and Go Fish! Background Introduction It is important to properly identify fi sh for many reasons: to follow the rules and regulations, for protection against sharp teeth or protruding spines, for the safety of the fi sh, and for consumption or eating purposes. When identifying fi sh, scientists and anglers use specifi c vocabulary to describe external or outside body parts. These body parts are common to most fi sh. The difference in the body parts is what helps distinguish one fi sh from another, while their similarities are used to classify them into groups. There are approximately 29,000 fi sh species in the world. In order to identify each type of fi sh, scientists have grouped them according to their outside body parts, specifi cally the number and location of fi ns, and body shape. Classifi cation Using a system of classifi cation, scientists arrange all organisms into groups based on their similarities. The fi rst system of classifi cation was proposed in 1753 by Carolus Linnaeus. Linnaeus believed that each organism should have a binomial name, genus and species, with species being the smallest organization unit of life. Using Linnaeus’ system as a guide, scientists created a hierarchical system known as taxonomic classifi cation, in which organisms are classifi ed into groups based on their similarities. This hierarchical system moves from largest and most general to smallest and most specifi c: kingdom, phylum, class, order, family, genus, and species. {See Figure 1. Taxonomic Classifi cation Pyramid}. For example, fi sh belong to the kingdom Animalia, the phylum Chordata, and from there are grouped more specifi cally into several classes, orders, families, and thousands of genus and species.