Effects of a Temperature-Sensitive Minute Mutation on Gene Expression in Drosophila Melanogaster
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From Gene to Phene*
T HE JOURNAL OF i NVEST IGATIV E D EHMATO LOGY Vol. 60, N o.6 Copyri ght © 1973 by The Wi lli ams & Wdkms Co. Printed in U. S.A. FROM GENE TO PHENE* JAN H. PORTER, M.D. INTRODUCTION acid. The normal (:J-c hain is made up of 146 a m ino acids a nd as each a mino acid is coded for b y a trio Chromosomes are t he o rgans o f heredity. T hey of DNA bases, the gene determining t he c hain carry t he ge nes, the units of heredity . must contain 438 bases. Since the mutation caus Chromosomes transmit groups o f ge nes fr om one in vo lves the 6th trip let in ge neration to the next, and ge nes mediate the_ ing t he sickl e cell allele 7th, a nd 18th b ases inheri ted m essage by directing t he synt hesiS of the sequence - the 16th, 1 and since adenine has bee n changed for thymine polypept ides. We s hould, t herefore, be a bl ~ to relate a gi ven characteristic (phenotype) of an on one o f the t wo complementary strands of the DNA, it must be t he 17th base t hat is replaced by individual to a s peci fic ge ne (genotype) . Indeed, a e findings in sickle cell full account of a g iven characteristic s hould start another. Alm ost all th disease can be ex plained by the phys ical proper with the type and sequence of t hose d eoxy rib o n~ ties of reduced hemoglobin S, particul arly by i t cl eic ( DNA) bases which m ake up t he ge ne m low solu bili ty at low oxygen tension . -
The Joy of Balancers
REVIEW The joy of balancers 1,2 3 4,5 Danny E. MillerID *, Kevin R. Cook , R. Scott HawleyID * 1 Department of Medicine, Division of Medical Genetics, University of Washington, Seattle, Washington, United States of America, 2 Department of Pediatrics, Division of Genetic Medicine, University of Washington, Seattle, Washington and Seattle Children's Hospital, Seattle, Washington, United States of America, 3 Department of Biology, Indiana University, Bloomington, Indiana, United States of America, 4 Stowers Institute for Medical Research, Kansas City, Missouri, United States of America, 5 Department of Molecular and Integrative Physiology, University of Kansas Medical Center, Kansas City, Kansas, United States of America * [email protected] (DEM); [email protected] (RSH) Abstract Balancer chromosomes are multiply inverted and rearranged chromosomes that are widely used in Drosophila genetics. First described nearly 100 years ago, balancers are used extensively in stock maintenance and complex crosses. Recently, the complete molecular a1111111111 structures of several commonly used balancers were determined by whole-genome a1111111111 sequencing. This revealed a surprising amount of variation among balancers derived from a a1111111111 a1111111111 common progenitor, identified genes directly affected by inversion breakpoints, and cata- a1111111111 loged mutations shared by balancers. These studies emphasized that it is important to choose the optimal balancer, because different inversions suppress meiotic recombination in different chromosomal regions. In this review, we provide a brief history of balancers in Drosophila, discuss how they are used today, and provide examples of unexpected recom- bination events involving balancers that can lead to stock breakdown. OPEN ACCESS Citation: Miller DE, Cook KR, Hawley RS (2019) The joy of balancers. -
Hypomorphic Lethal Mutations and Their Implications for the Interpretation of Lethal Complementation Studies in Drosophila
Copyright 0 1983 by the Genetics Society of America HYPOMORPHIC LETHAL MUTATIONS AND THEIR IMPLICATIONS FOR THE INTERPRETATION OF LETHAL COMPLEMENTATION STUDIES IN DROSOPHILA DAVID NASH AND FRANK C. JANCA Department of Genetics, University of Alberta, Edmonton, Alberta, Canada T6G 2E9 Manuscript received May 27, 1983 Revised copy accepted August 25, 1983 ABSTRACT In a small region of the X chromosome of Drosophila melanogaster, we have found that a third of the mutations that appear to act as lethals in segmental haploids are viable in homozygous mutant individuals. These viable mutations fall into four complementation groups. The most reasonable explanation of these mutations is that they are a subset of functionally hypomorphic alleles of essential genes: hypomorphic mutations with activity levels above a threshold required for survival, but below twice that level, should behave in this manner. We refer to these mutations as “haplo-specific lethal mutations.” In studies of autosomal lethals, haplo-specific lethal mutations can be included in lethal com- plementation tests without being identified as such. Accidental inclusion of disguised haplo-specific lethals in autosomal complementation tests will gener- ate spurious examples of interallelic complementation. UTATIVE lethal mutations of Drosophila melanogaster, defined by their P exposure by a deficiency, may or may not act as lethals in homozygous or hemizygous conditions (WELSHONS 197 1; LEFEVREand JOHNSON 1973; SAN- DLER 1977; JOHNSON, WOLOSHYNand NASH1979; BELYAEVAet al. 1980). The probable explanation of this phenomenon involves a trivial extension of MULL- ER’S (1932) definition of hypomorphy to essential genes: the more extreme expression in the hypomorph/deficiency heterozygote in this case results in death, whereas the homozygote (or hemizygote) exhibits sufficient activity to allow survival. -
An Estimate of the Average Number of Recessive Lethal Mutations Carried by Humans
An estimate of the average number of recessive lethal mutations carried by humans Short title: Mean number of recessive lethal mutations in human Key words: recessive lethal mutation, autosomal recessive disease, consanguinity Ziyue Gaoa,1, Darrel Waggonerb,c, Matthew Stephensb,d, Carole Oberb,e and Molly Przeworskif,g,1 a Committee on Genetics, Genomics and Systems Biology, University of Chicago b Department of Human Genetics, University of Chicago c Department of Pediatrics, University of Chicago d Department of Statistics, University of Chicago e Department of Obstetrics and Gynecology, University of Chicago f Department of Biological Sciences, Columbia University g Department of Systems Biology, Columbia University 1 Corresponding authors: Ziyue Gao, 920 E 58th St., CLSC 413, Chicago, 773-702- 2750, [email protected]; Molly Przeworski, 608A Fairchild Center, 1212 Amsterdam Ave., New York, 212-854-9063, [email protected] 1 Abstract The effects of inbreeding on human health depend critically on the number and severity of recessive, deleterious mutations carried by individuals. In humans, existing estimates of these quantities are based on comparisons between consanguineous and non-consanguineous couples, an approach that confounds socioeconomic and genetic effects of inbreeding. To circumvent this limitation, we focused on a founder population with almost complete Mendelian disease ascertainment and a known pedigree. By considering all recessive lethal diseases reported in the pedigree and simulating allele transmissions, we estimated that each haploid set of human autosomes carries on average 0.29 (95% credible interval [0.10, 0.83]) autosomal, recessive alleles that lead to complete sterility or severe disorders at birth or before reproductive age when homozygous. -
<Emphasis Type="Italic">Wingless </Emphasis> Mutation in <Emphasis Type="Italic">Drosophil
J. Biosci., Vol. 12, No. 1, March 1987, pp. 1–11. © Printed in India. Wingless mutation in Drosophila melanogaster S. G. BHAT and P. BABU* Molecular Biology Unit, Tata Institute of Fundamental Research, Bombay 400 005, India MS received 13 June 1986; revised 6 December 1986 Abstract. A temperature sensitive lethal allele of the wingless locus of Drosophila melano- gaster together with previously studied lethal and viable alleles in this locus, has been used to study some properties of this locus. These studies show the existence of two lethal phases for the wingless lesion; one during embryogenesis and another during pupation. By growing embryos with temperature sensitive wingless lesion at the permissive temperature and letting the larvae develop at non-permissive temperature, a large-scale cell death and subsequent regeneration were seen to occur in the mutant wing discs. This cell death followed by re- generation alters the normal developmental potential of the wing disc. Disc transplantation experiments show that these discs are incapable of differentiating into wing blade structures. Keywords. Drosophila; wingless; temperature-sensitive; disc transplantation. Introduction The fruitfly Drosophila melanogaster was chosen as the organism of choice by T. H. Morgan and his coworkers for genetic studies in the early part of this century. These studies have led to the discovery of several major aspects of genetics. Drosophila has again recently become a favoured organism for the study of the genetic basis of development. In order to understand the genetic programming of development, we could classify genes of Drosophila into those with a controlling role and those with a subsidiary function. -
Roles of Mutation and Selection in Speciation: from Hugo De Vries to the Modern Genomic Era
GBE Roles of Mutation and Selection in Speciation: From Hugo de Vries to the Modern Genomic Era Masatoshi Nei* and Masafumi Nozawa Institute of Molecular Evolutionary Genetics and Department of Biology, Pennsylvania State University *Corresponding author: E-mail: [email protected]. Accepted: 17 March 2011 Abstract One of the most important problems in evolutionary biology is to understand how new species are generated in nature. In the past, it was difficult to study this problem because our lifetime is too short to observe the entire process of speciation. In recent years, however, molecular and genomic techniques have been developed for identifying and studying the genes involved in speciation. Using these techniques, many investigators have already obtained new findings. At present, however, the results obtained are complex and quite confusing. We have therefore attempted to understand these findings coherently with a historical perspective and clarify the roles of mutation and natural selection in speciation. We have first indicated that Downloaded from the root of the currently burgeoning field of plant genomics goes back to Hugo de Vries, who proposed the mutation theory of evolution more than a century ago and that he unknowingly found the importance of polyploidy and chromosomal rearrangements in plant speciation. We have then shown that the currently popular Dobzhansky–Muller model of evolution gbe.oxfordjournals.org of reproductive isolation is only one of many possible mechanisms. Some of them are Oka’s model of duplicate gene mutations, multiallelic speciation, mutation-rescue model, segregation-distorter gene model, heterochromatin-associated speciation, single-locus model, etc. The occurrence of speciation also depends on the reproductive system, population size, bottleneck effects, and environmental factors, such as temperature and day length. -
Molecular Genetics Simon Petersen-Jones
Molecular Genetics Simon Petersen-Jones Professor, Comparative Ophthalmology Dept. Small Animal Clinical Sciences Michigan State University What’s your diagnosis? Mendelian Inheritance • Mendel’s laws apply to genes on separate chromosomes • The simplest genetic characteristics depend on the genotype at a single locus • Modes of inheritance: – autosomal recessive – autosomal dominant – X-linked recessive – X-linked dominant The Work of Gregor Mendel • Mendel crossed pea plants with different characteristics and observed the resulting physical appearance (phenotype) – round peas vs wrinkled peas – yellow peas vs green peas – gray seed coat vs white seed coat – tall plants vs short plants The Work of Gregor Mendel • Mendel presented his findings in 1865 to a natural history society • Published “Experiments with plant hybrids” in 1866 • Frustrated by lack of interest in results became an administrator What We Learned from Mendel • There is a specific pair of genes for each trait – the genotype for a given trait is specified by a pair of genes – some loci may have more than one allele • During formation of gametes the gene pair for a trait segregates equally – one gamete only receives one of a pair of genes – Mendel’s law of equal segregation (first principle) What We Learned from Mendel • A gene has two forms - alleles (e.g. A and a) – genotype aa (homozygous for a) express a recessive phenotype – genotypes AA or Aa express a dominant phenotype What We Learned from Mendel • During formation of gametes the segregation of the gene pair for -
A Lethal Allele of Dilute in the House Mouse A
A LETHAL ALLELE OF DILUTE IN THE HOUSE MOUSE A. G. SEARLE University College, London, W.C.l. Received12.ii.52 THE recessive gene "dilutelethal "(symbold') first occurred in the pure line C BL/Gr in June 1950, as a spontaneous mutation. It was noticed that three out of a litter of seven had a dilute fur-colour. Later they developed neurological defects and died soon after weaning. The parents were perfectly normal in behaviour and fur-colour. DESCRIPTION Ona C7Black background the mutants can first be distinguished at the age of three or four days by their lighter pigmentation. For the first nine days or so they behave normally and start walking. But soon they tend to overbalance. If at rest they lean over more and more to one side or the other until they fall, with an associated hyperextension of the limbs on the opposite side. On righting themselves, nine-day mutants may show slight convulsive limb movements. When walking they topple over without warning and the hind-limbs tend to drag. At twelve days, the mutant is hardly able to walk at all, but can move more easily when on its side, often going in circles in apparent efforts to right itse1f, which take much longer than normal. Convul- sions are more marked, being clonic in nature with the fore-limbs rapidly beating up and down. By fifteen or sixteen days the whole syndrome is well-developed. A fit usually begins whenever the animal is disturbed or when it over- balances and struggles to right itself, but sometimes the cause is un- certain. -
Molecular and Functional Analysis of Scalloped Recessive Lethal Alleles in Drosophila Melanogaster
Copyright 2004 by the Genetics Society of America Molecular and Functional Analysis of scalloped Recessive Lethal Alleles in Drosophila melanogaster Ajay Srivastava,*,1 Andrew J. Simmonds,† Ankush Garg,* Leif Fossheim,† Shelagh D. Campbell* and John B. Bell*,2 *Department of Biological Sciences and †Department of Cell Biology, University of Alberta, Edmonton, Alberta T6G 2E9, Canada Manuscript received August 7, 2003 Accepted for publication January 9, 2004 ABSTRACT The Drosophila melanogaster scalloped (sd) gene is a homolog of the human TEF-1 gene and is a member of the TEA/ATTS domain-containing family of transcription factors. In Drosophila, sd is involved in wing development as well as neural development. Herein, data are presented from a molecular analysis of five recessive lethal sd alleles. Only one of these alleles complements a viable allele associated with an sd mutant wing phenotype, suggesting that functions important for wing development are compromised by the noncomplementing alleles. Two of the wing noncomplementing alleles have mutations that help to define a VG-binding domain for the SD protein in vivo, and another noncomplementing allele has a lesion within the TEA DNA-binding domain. The VG-binding domain overlaps with a domain important for viability of the fly, since two of the sd lethal lesions are located there. The fifth lethal affects a yet undefined motif lying just outside the VG-binding domain in the C-terminal direction that affects both wing phenotype and viability. This is the first example linking mutations affecting specific amino acids in the SD protein with phenotypic consequences for the organism. HE scalloped (sd) gene was first identified because main (Campbell et al. -
Test Bank for Chapter 5: Extensions and Modifications of Basic Principles
Test Bank for Chapter 5: Extensions and Modifications of Basic Principles Multiple Choice Questions 1. The R locus determines flower color in a new plant species. Plants that are genotype RR have red flowers, and plants that are rr have white flowers. However, Rr plants have pink flowers. What type of inheritance does this demonstrate for flower color in these plants? a. Complete dominance b. Incomplete dominance c. Codominance d. Complementation e. Lethal alleles Answer: b Section 5.1 Comprehension 2. Interactions among the human ABO blood group alleles involve _______ and ________. a. co-dominance; complete dominance b. codominance; incomplete dominance c. complete dominance; incomplete dominance d. epistasis; complementation e. continuous variation; environmental variation Answer: a Section 5.1 Comprehension 3. In the endangered African watchamakallit, the offspring of a true-breeding black parent and a true-breeding white parent are all gray. When the gray offspring are crossed among themselves, their offspring occur in a ratio of 1 black:2 gray:1 white. Upon close examination of the coats, each hair of a gray animal is gray. What is the mode of inheritance? a. One gene pair with black dominant to white b. One gene pair with codominance c. One gene pair with incomplete dominance d. Two gene pairs with recessive epistasis e. Two gene pairs with duplicate genes Answer: c Section 5.1 Comprehension 4. Suppose that extra fingers and toes are caused by a recessive trait, but it appears in only 60% of homozygous recessive individuals. Two heterozygotes conceive a child. What is the probability that this child will have extra fingers and toes? a. -
Functional Phenomics: an Emerging Field Integrating High-Throughput Phenotyping, 2 Physiology, and Bioinformatics
bioRxiv preprint doi: https://doi.org/10.1101/370288; this version posted July 16, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Functional phenomics: An emerging field integrating high-throughput phenotyping, 2 physiology, and bioinformatics 3 Larry M. York* 4 *Corresponding Author 5 Noble Research Institute. Ardmore, OK 73401 USA 6 580-224-6720 7 [email protected] 8 Submitted April 10, 2018 9 3 figures, 4 boxes 10 Word count: 3781 11 bioRxiv preprint doi: https://doi.org/10.1101/370288; this version posted July 16, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 12 Functional phenomics: Integrating high-throughput phenotyping, physiology, and 13 bioinformatics 14 Running title: Functional phenomics 15 Highlight: Functional phenomics is an emerging field in plant biology that relies on high- 16 throughput phenotyping, big data analytics, controlled manipulative experiments, and 17 simulation modelling to increase understanding of plant physiology. 18 Abstract 19 The emergence of functional phenomics signifies the rebirth of physiology as a 21st 20 century science through the use of advanced sensing technologies and big data analytics. 21 Functional phenomics highlights the importance of phenotyping beyond only identifying 22 genetic regions because a significant knowledge gap remains in understanding which plant 23 properties will influence ecosystem services beneficial to human welfare. -
Phene Analysis, Overdominance, Variability
Hereditas 86: 251-266 (1977) Effects of the Pallas gene in barley: phene analysis, overdominance, variability AKE GUSTAFSSON, GUNNAR EKMAN AND INGEGERD DORMLING Institute of Genetics, University of Lund Semka AB, Sundbyberg The Phytotron, Swedish University of Agriculture, Stockholm, Sweden GUSTAFSSON,A., EKMAN,G. and DORMLING,I. 1977. Effects of the Pallas gene in barley: phene analysis, overdominance, variability. - Hereditas 86: 251 -266 Lund, Sweden. JSSN 001 8-0661. Received May 1, 1977 Pallas barley is a high-yielding mutant induced by X-rays in Bonus barley and was among the first cereal mutants released into practice. It is characterized by a high lodging resistance and surpassed its parent variety Bonus, under good soil conditions, in yielding capacity. It has been widely cultivated in several European countries. It wasconsidered worth while to analyse the phene reactions of the mutant, its parent strain Bonus and their F,-hybrid (Pallas x Bonus) in the Stockholm phytotron under varied climatic conditions. Three photoperiods and two thermoperiods were chosen for study. Fifteen phenotypic traits (phenes) were analysed concerning generative and vegetative production, occur- rence and expression of dominance and overdominance, as well as phene variability (flexibility). Overdominance was common and often highly significant. Variability of individual phenes changed widely. In generative traits Pallas was more variable than Bonus and the F,-hybrid. Under certain climatic conditions, the hybrid, in its turn, was definitely less variable than the parents. An evident interaction of genotype and climatic condition on productivity and variability was found. Ake Gustafsson, Institute of Genetics, S-223 62 Lund, Sweden The barley mutant erectoides 32 (ert-k3’)was isolated In the year 1974, cross materials of Pallas x Pallas, in 1947 from Svalov’s Bonus barley.