Man Observation of Talaromyces Marneffei‐
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Obligate Biotrophs of Humans and Other Mammals
Pearls Genomic Insights into the Fungal Pathogens of the Genus Pneumocystis: Obligate Biotrophs of Humans and Other Mammals Philippe M. Hauser* Institute of Microbiology, Centre Hospitalier Universitaire Vaudois and University of Lausanne, Lausanne, Switzerland Pneumocystis organisms were first believed to be a single telomeres were not assembled. The nuclear genomes of the three protozoan species able to colonize the lungs of all mammals. Pneumocystis spp. are approximately 8 Mb. Subsequently, genetic analyses revealed their affiliation to the The mitochondrial genomes of P. murina and P. carinii are fungal Taphrinomycotina subphylum of the Ascomycota, a clade approximately 25 kb, whereas that of P. jirovecii is around 35 kb which encompasses plant pathogens and free-living yeasts. It also (Table 1). This size difference is due to a supplementary region that is appeared that, despite their similar morphological appearance, non-coding and highly variable in size and sequence among isolates these fungi constitute a family of relatively divergent species, each [5]. The circular structure of the P. jirovecii mitochondrial genome with a strict specificity for a unique mammalian species [1]. The differs from the linear one present in the two other Pneumocystis spp. species colonizing human lungs, Pneumocystis jirovecii, can turn The biological significance of this difference remains unknown. into an opportunistic pathogen that causes Pneumocystis pneu- monia (PCP) in immunocompromised individuals, a disease which Genome Content may be fatal. Although the incidence of PCP diminished in the 1990s thanks to prophylaxis and antiretroviral therapy, PCP is Using gene models specifically developed, the three Pneumo- nowadays the second-most-frequent, life-threatening, invasive cystis spp. -
Coccidioides Immitis
24/08/2017 FUNGAL AGENTS CAUSING INFECTION OF THE LUNG Microbiology Lectures of the Respiratory Diseases Prepared by: Rizalinda Sjahril Microbiology Department Faculty of Medicine Hasanuddin University 2016 OVERVIEW OF CLINICAL MYCOLOGY . Among 150.000 fungi species only 100-150 are human pathogens 25 spp most common pathogens . Majority are saprophyticLiving on dead or decayed organic matter . Transmission Person to person (rare) SPORE INHALATION OR ENTERS THE TISSUE FROM TRAUMA Animal to person (rare) – usually in dermatophytosis 1 24/08/2017 OVERVIEW OF CLINICAL MYCOLOGY . Human is usually resistant to infection, unless: Immunoscompromised (HIV, DM) Serious underlying disease Corticosteroid/antimetabolite treatment . Predisposing factors: Long term intravenous cannulation Complex surgical procedures Prolonged/excessive antibacterial therapy OVERVIEW OF CLINICAL MYCOLOGY . Several fungi can cause a variety of infections: clinical manifestation and severity varies. True pathogens -- have the ability to cause infection in otherwise healthy individuals 2 24/08/2017 Opportunistic/deep mycoses which affect the respiratory system are: Cryptococcosis Aspergillosis Zygomycosis True pathogens are: Blastomycosis Seldom severe Treatment not required unless extensive tissue Coccidioidomycosis destruction compromising respiratory status Histoplasmosis Or extrapulmonary fungal dissemination Paracoccidioidomycosis COMMON PATHOGENS OBTAINED FROM SPECIMENS OF PATIENTS WITH RESPIRATORY DISEASE Fungi Common site of Mode of Infectious Clinical -
1. Economic, Ecological and Cultural Importance of Fungi
1. Economic, ecological and cultural importance of Fungi Fungi as food Yeast fermentations, Saccaromyces cerevesiae [Ascomycota] alcoholic beverages, yeast leavened bread Glucose 2 glyceraldehyde-3-phosphate + 2 ATP 2 NAD O2 2 NADH2 2 pyruvate + 2 ATP + 2 H2O 2 ethanol 2 acetaldehyde + 2 ATP + 2 CO2 Fungi as food Citric acid Aspergillus niger Fungi as food Cheese Penicillium camembertii, Penicillium roquefortii Rennet, chymosin produced by Rhizomucor miehei and recombinant Aspergillus niger, Saccharomyces cerevesiae chymosin first GM enzyme approved for use in food Fungi as food Quorn mycoprotein, produced from biomass of Fusarium venenatum [Ascomycota] Fungi as food Red yeast rice, Monascus purpureus Soy fermentations, Aspergillus oryzae [Ascomycota] contains lovastatin? Tempeh, made with Rhizopus oligosporus [Zygomycota] Fungi as food Other fungal food products: vitamins and enzymes • vitamins: riboflavin (vitamin B2), commercially produced by Ashbya gossypii • chocolate: cacao beans fermented before being made into chocolate with a mixture of yeasts and filamentous fungi: Candida krusei, Geotrichum candidum, Hansenula anomala, Pichia fermentans • candy: invertase, commercially produced by Aspergillus niger, various yeasts, enzyme splits disaccharide sucrose into glucose and fructose, used to make candy with soft centers • glucoamylase: Aspergillus niger, used in baking to increase fermentable sugar, also a cause of “baker’s asthma” • pectinases, proteases, glucanases for clarifying juices, beverages Fungi as food Perigord truffle, Tuber -
Pneumocystis Pneumonia: Immunity, Vaccines, and Treatments
pathogens Review Pneumocystis Pneumonia: Immunity, Vaccines, and Treatments Aaron D. Gingerich 1,2, Karen A. Norris 1,2 and Jarrod J. Mousa 1,2,* 1 Center for Vaccines and Immunology, College of Veterinary Medicine, University of Georgia, Athens, GA 30602, USA; [email protected] (A.D.G.); [email protected] (K.A.N.) 2 Department of Infectious Diseases, College of Veterinary Medicine, University of Georgia, Athens, GA 30602, USA * Correspondence: [email protected] Abstract: For individuals who are immunocompromised, the opportunistic fungal pathogen Pneumocystis jirovecii is capable of causing life-threatening pneumonia as the causative agent of Pneumocystis pneumonia (PCP). PCP remains an acquired immunodeficiency disease (AIDS)-defining illness in the era of antiretroviral therapy. In addition, a rise in non-human immunodeficiency virus (HIV)-associated PCP has been observed due to increased usage of immunosuppressive and im- munomodulating therapies. With the persistence of HIV-related PCP cases and associated morbidity and mortality, as well as difficult to diagnose non-HIV-related PCP cases, an improvement over current treatment and prevention standards is warranted. Current therapeutic strategies have pri- marily focused on the administration of trimethoprim-sulfamethoxazole, which is effective at disease prevention. However, current treatments are inadequate for treatment of PCP and prevention of PCP-related death, as evidenced by consistently high mortality rates for those hospitalized with PCP. There are no vaccines in clinical trials for the prevention of PCP, and significant obstacles exist that have slowed development, including host range specificity, and the inability to culture Pneumocystis spp. in vitro. In this review, we overview the immune response to Pneumocystis spp., and discuss current progress on novel vaccines and therapies currently in the preclinical and clinical pipeline. -
Turning on Virulence: Mechanisms That Underpin the Morphologic Transition and Pathogenicity of Blastomyces
Virulence ISSN: 2150-5594 (Print) 2150-5608 (Online) Journal homepage: http://www.tandfonline.com/loi/kvir20 Turning on Virulence: Mechanisms that underpin the Morphologic Transition and Pathogenicity of Blastomyces Joseph A. McBride, Gregory M. Gauthier & Bruce S. Klein To cite this article: Joseph A. McBride, Gregory M. Gauthier & Bruce S. Klein (2018): Turning on Virulence: Mechanisms that underpin the Morphologic Transition and Pathogenicity of Blastomyces, Virulence, DOI: 10.1080/21505594.2018.1449506 To link to this article: https://doi.org/10.1080/21505594.2018.1449506 © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group© Joseph A. McBride, Gregory M. Gauthier and Bruce S. Klein Accepted author version posted online: 13 Mar 2018. Submit your article to this journal Article views: 15 View related articles View Crossmark data Full Terms & Conditions of access and use can be found at http://www.tandfonline.com/action/journalInformation?journalCode=kvir20 Publisher: Taylor & Francis Journal: Virulence DOI: https://doi.org/10.1080/21505594.2018.1449506 Turning on Virulence: Mechanisms that underpin the Morphologic Transition and Pathogenicity of Blastomyces Joseph A. McBride, MDa,b,d, Gregory M. Gauthier, MDa,d, and Bruce S. Klein, MDa,b,c a Division of Infectious Disease, Department of Medicine, University of Wisconsin School of Medicine and Public Health, 600 Highland Avenue, Madison, WI 53792, USA; b Division of Infectious Disease, Department of Pediatrics, University of Wisconsin School of Medicine and Public Health, 1675 Highland Avenue, Madison, WI 53792, USA; c Department of Medical Microbiology and Immunology, University of Wisconsin School of Medicine and Public Health, 1550 Linden Drive, Madison, WI 53706, USA. -
Mucormycosis of the Central Nervous System
Journal of Fungi Review Mucormycosis of the Central Nervous System 1 1,2, , 3, , Amanda Chikley , Ronen Ben-Ami * y and Dimitrios P Kontoyiannis * y 1 Infectious Diseases Unit, Tel Aviv Sourasky Medical Center, Tel Aviv 64239, Israel 2 Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv 64239, Israel 3 Department of Infectious Diseases, The University of Texas, M.D. Anderson Cancer Center, Houston, TX 77030, USA * Correspondence: [email protected] (R.B.-A.); [email protected] (D.P.K.) These authors contribute equally to this paper. y Received: 6 June 2019; Accepted: 7 July 2019; Published: 8 July 2019 Abstract: Mucormycosis involves the central nervous system by direct extension from infected paranasal sinuses or hematogenous dissemination from the lungs. Incidence rates of this rare disease seem to be rising, with a shift from the rhino-orbital-cerebral syndrome typical of patients with diabetes mellitus and ketoacidosis, to disseminated disease in patients with hematological malignancies. We present our current understanding of the pathobiology, clinical features, and diagnostic and treatment strategies of cerebral mucormycosis. Despite advances in imaging and the availability of novel drugs, cerebral mucormycosis continues to be associated with high rates of death and disability. Emerging molecular diagnostics, advances in experimental systems and the establishment of large patient registries are key components of ongoing efforts to provide a timely diagnosis and effective treatment to patients with cerebral mucormycosis. Keywords: central nervous system; mucormycosis; Mucorales; zygomycosis 1. Introduction Mucormycosis is the second most frequent invasive mold disease after aspergillosis [1–3], with rising incidence reported in some countries [4–7]. -
GAFFI Fact Sheet Pneumocystis Pneumonia
OLD VERSION GLOBAL ACTION FUNDGAL FOR INFECTIONS FUN GAFFI Fact Sheet Pneumocystis pneumonia GLOBAL ACTION FUNDGAL FOR INFECTIONS Pneumocystis pneumonia (PCP) is a life-threatening illness of largely FUN immunosuppressed patients such as those with HIV/AIDS. However, when diagnosed rapidly and treated, survival rates are high. The etiologic agent of PCP is DARKER AREAS AND SMALLER VERSION TEXT FIT WITHIN CIRCLE (ALSO TO BE USED AS MAIN Pneumocystis jirovecii, a human only fungus that has co-evolved with humans. Other LOGO IN THE FUTURE) mammals have their own Pneumocystis species. Person to person transmission occurs early in life as demonstrated by antibody formation in infancy and early childhood. Some individuals likely clear the fungus completely, while others become carriers of variable intensity. About 20% of adults are colonized but higher colonization rates occur in children and immunosuppressed adults; ethnicity and genetic associations with colonization are poorly understood. Co-occurrence of other respiratory infections may provide the means of transmission in most instances. Patients with Pneumocystis pneumonia (PCP) are highly infectious. Prophylaxis with oral cotrimoxazole is highly effective in preventing infection. Pneumocystis pneumonia The occurrence of fatal Pneumocystis pneumonia in homosexual men in the U.S. provided one of earliest signals of the impending AIDS epidemic in the 1980s. Profound immunosuppression, especially T cell depletion and dysfunction, is the primary risk group for PCP. Early in the AIDS epidemic, PCP was the AIDS-defining diagnosis in ~60% of individuals. This frequency has fallen in the western world, but infection is poorly documented in most low-income countries because of the lack of diagnostic capability. -
25 Chrysosporium
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Universidade do Minho: RepositoriUM 25 Chrysosporium Dongyou Liu and R.R.M. Paterson contents 25.1 Introduction ..................................................................................................................................................................... 197 25.1.1 Classification and Morphology ............................................................................................................................ 197 25.1.2 Clinical Features .................................................................................................................................................. 198 25.1.3 Diagnosis ............................................................................................................................................................. 199 25.2 Methods ........................................................................................................................................................................... 199 25.2.1 Sample Preparation .............................................................................................................................................. 199 25.2.2 Detection Procedures ........................................................................................................................................... 199 25.3 Conclusion .......................................................................................................................................................................200 -
Valley Fever a K a Coccidioidomycosis Coccidioidosis Coccidiodal Granuloma San Joaquin Valley Fever Desert Rheumatism Valley Bumps Cocci Cox C
2019 Lung Infection Symposium - Libke 10/26/2019 58 YO ♂ • 1974 PRESENTED WITH HEADACHE – DX = COCCI MENINGITIS WITH HYDROCEPHALUS – Rx = IV AMPHOTERICIN X 6 WKS – VP SHUNT – INTRACISTERNAL AMPHO B X 2.5 YRS (>200 PUNCTURES) • 1978 – 2011 VP SHUNT REVISIONS X 5 • 1974 – 2019 GAINFULLY EMPLOYED, RAISED FAMILY, RETIRED AND CALLS OCCASIONALLY TO SEE HOW I’M DOING. VALLEY FEVER A K A COCCIDIOIDOMYCOSIS COCCIDIOIDOSIS COCCIDIODAL GRANULOMA SAN JOAQUIN VALLEY FEVER DESERT RHEUMATISM VALLEY BUMPS COCCI COX C 1 2019 Lung Infection Symposium - Libke 10/26/2019 COCCIDIOIDOMYCOSIS • DISEASE FIRST DESCRIBED IN 1892 – POSADAS –ARGENTINA – RIXFORD & GILCHRIST - CALIFORNIA – INITIALLY THOUGHT PARASITE – RESEMBLED COCCIDIA “COCCIDIOIDES” – “IMMITIS” = NOT MINOR COCCIDIOIDOMYCOSIS • 1900 ORGANISM IDENTIFIED AS FUNGUS – OPHULS AND MOFFITT – ORGANISM CULTURED FROM TISSUES OF PATIENT – LIFE CYCLE DEFINED – FULFULLED KOCH’S POSTULATES 2 2019 Lung Infection Symposium - Libke 10/26/2019 COCCIDIOIDOMYCOSIS • 1932 ORGANISM IN SOIL SAMPLE FROM DELANO – UNDER BUNKHOUSE OF 4 PATIENTS – DISEASE FATAL • 1937 DICKSON & GIFFORD CONNECTED “VALLEY FEVER” TO C. IMMITIS – USUALLY SELF LIMITED – FREQUENTLY SEEN IN SAN JOAQUIN VALLEY – RESPIRATORY TRACT THE PORTAL OF ENTRY The usual cause for coccidioidomycosis in Arizona is C. immitis A. True B. False 3 2019 Lung Infection Symposium - Libke 10/26/2019 COCCIDIOIDAL SPECIES • COCCIDIOIDES IMMITIS – CALIFORNIA • COCCIDIOIDES POSADASII – NON-CALIFORNIA • ARIZONA, MEXICO • OVERLAP IN SAN DIEGO AREA THE MICROBIAL WORLD • PRIONS -
Estimation of the Burden of Serious Human Fungal Infections in Malaysia
Journal of Fungi Article Estimation of the Burden of Serious Human Fungal Infections in Malaysia Rukumani Devi Velayuthan 1,*, Chandramathi Samudi 1, Harvinder Kaur Lakhbeer Singh 1, Kee Peng Ng 1, Esaki M. Shankar 2,3 ID and David W. Denning 4,5 ID 1 Department of Medical Microbiology, Faculty of Medicine, University of Malaya, Kuala Lumpur 50603, Malaysia; [email protected] (C.S.); [email protected] (H.K.L.S.); [email protected] (K.P.N.) 2 Centre of Excellence for Research in AIDS (CERiA), Faculty of Medicine, University of Malaya, Kuala Lumpur 50603, Malaysia; [email protected] 3 Department of Microbiology, School of Basic & Applied Sciences, Central University of Tamil Nadu (CUTN), Thiruvarur 610 101, Tamil Nadu, India 4 Faculty of Biology, Medicine and Health, The University of Manchester and Manchester Academic Health Science Centre, Oxford Road, Manchester M13 9PL, UK; [email protected] 5 The National Aspergillosis Centre, Education and Research Centre, Wythenshawe Hospital, Manchester M23 9LT, UK * Correspondence: [email protected]; Tel.: +60-379-492-755 Received: 11 December 2017; Accepted: 14 February 2018; Published: 19 March 2018 Abstract: Fungal infections (mycoses) are likely to occur more frequently as ever-increasingly sophisticated healthcare systems create greater risk factors. There is a paucity of systematic data on the incidence and prevalence of human fungal infections in Malaysia. We conducted a comprehensive study to estimate the burden of serious fungal infections in Malaysia. Our study showed that recurrent vaginal candidiasis (>4 episodes/year) was the most common of all cases with a diagnosis of candidiasis (n = 501,138). -
Coccidioides Posadasii Contains Single Chitin Synthase Genes Corresponding to Classes I to VII
Fungal Genetics and Biology 43 (2006) 775–788 www.elsevier.com/locate/yfgbi Coccidioides posadasii contains single chitin synthase genes corresponding to classes I to VII M. Alejandra Mandel a,b, John N. Galgiani b,c,d, Scott Kroken a, Marc J. Orbach a,b,* a Department of Plant Sciences, Division of Plant Pathology and Microbiology, University of Arizona, Tucson, AZ 85721-0036, USA b Valley Fever Center for Excellence, Tucson, AZ, USA c Department of Internal Medicine, College of Medicine, University of Arizona, Tucson, AZ, USA d Southern Arizona Veterans Administration Health Care System, Tucson, AZ, USA Received 21 September 2005; accepted 23 May 2006 Available online 20 July 2006 Abstract Coccidioides posadasii is a dimorphic fungal pathogen of humans and other mammals. The switch between saprobic and parasitic growth involves synthesis of new cell walls of which chitin is a significant component. To determine whether particular subsets of chitin synthases (CHSes) are responsible for production of chitin at different stages of differentiation, we have isolated six CHS genes from this fungus. They correspond, together with another reported CHS gene, to single members of the seven defined classes of chitin synthases (classes I–VII). Using Real-Time RT-PCR we show their pattern of expression during morphogenesis. CpCHS2, CpCHS3, and CpCHS6 are preferentially expressed during the saprobic phase, while CpCHS1 and CpCHS4 are more highly expressed during the parasitic phase. CpCHS5 and CpCHS7 expression is similar in both saprobic and parasitic phases. Because C. posadasii contains single members of the seven classes of CHSes found in fungi, it is a good model to investigate the putatively different roles of these genes in fungal growth and differentiation. -
Valley Fever (Coccidioidomycosis) Tutorial for Primary Care Professionals, Now in Its Second Printing
Valley Fever (Coccidioidomycosis) Tutorial for Primary Care Professionals Prepared by the VALLEY FEVER CENTER FOR EXCELLENCE The University of Arizona 2 TABLE OF CONTENTS Preface ....................................................................................... 4 SECTION 1 ................................................................................. 7 OVERVIEW OF COCCIDIOIDOMYCOSIS History .................................................................................... 8 Mycology ................................................................................ 8 Epidemiology ....................................................................... 10 Spectrum of disease ........................................................... 11 Current therapies ................................................................. 12 SECTION 2 ............................................................................... 13 THE IMPORTANCE OF VALLEY FEVER IN PRIMARY CARE Case reporting ..................................................................... 14 Value of early diagnosis ....................................................... 17 SECTION 3 ............................................................................... 19 PRIMARY CARE MANAGEMENT OF COCCIDIOIDOMYCOSIS C onsider the diagnosis ........................................................ 20 O rder the right tests ............................................................. 23 C heck for risk factors .......................................................... 29 C heck for complications