Tumour-Like Anomaly of Copepods - an Evaluation of the Possible Causes in Indian Marine Waters *L
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Molecular Systematics of Freshwater Diaptomid Species of the Genus Neodiaptomus from Andaman Islands, India
www.genaqua.org ISSN 2459-1831 Genetics of Aquatic Organisms 2: 13-22 (2018) DOI: 10.4194/2459-1831-v2_1_03 RESEARCH PAPER Molecular Systematics of Freshwater Diaptomid Species of the Genus Neodiaptomus from Andaman Islands, India B. Dilshad Begum1, G. Dharani2, K. Altaff3,* 1 Justice Basheer Ahmed Sayeed College for Women, P. G. & Research Department of Zoology, Teynampet, Chennai - 600 018, India. 2 Ministry of Earth Sciences, Earth System Science Organization, National Institute of Ocean Technology, Chennai - 600 100, India. 3 AMET University, Department of Marine Biotechnology, Chennai - 603112, India. * Corresponding Author: Tel.: +9444108110; Received 10 April 2018 E-mail: [email protected] Accepted 29 July 2018 Abstract Calanoid copepods belonging to the family Diaptomidae occur commonly and abundantly in different types of freshwater environment. Based on morphological taxonomic key characters 48 diaptomid species belonging to 13 genera were reported from India. Taxonomic discrimination of many species of these genera is difficult due to their high morphological similarities and minute differences in key characters. In the present study two species of the genus, Neodiaptomus, N. meggiti and N. schmackeri from Andaman Islands were examined based on morphological and molecular characters which showed low variation in morphology and differences in their distributions. The morphological taxonomy of Copepoda with genetic analysis has shown complementing values in understanding the genetic variation and phylogeny of the contemporary populations. In this study, a molecular phylogenetic analysis of N. meggiti and N. schmackeri is performed on the basis of mitochondrial Cytochrome c oxidase subunit I (COI) gene. The mtDNA COI sequence of N. meggiti and N. -
A Parasite of Marine Rotifers: a New Lineage of Dinokaryotic Dinoflagellates (Dinophyceae)
Hindawi Publishing Corporation Journal of Marine Biology Volume 2015, Article ID 614609, 5 pages http://dx.doi.org/10.1155/2015/614609 Research Article A Parasite of Marine Rotifers: A New Lineage of Dinokaryotic Dinoflagellates (Dinophyceae) Fernando Gómez1 and Alf Skovgaard2 1 Laboratory of Plankton Systems, Oceanographic Institute, University of Sao˜ Paulo, Prac¸a do Oceanografico´ 191, Cidade Universitaria,´ 05508-900 Butanta,˜ SP, Brazil 2Department of Veterinary Disease Biology, University of Copenhagen, Stigbøjlen 7, 1870 Frederiksberg C, Denmark Correspondence should be addressed to Fernando Gomez;´ [email protected] Received 11 July 2015; Accepted 27 August 2015 Academic Editor: Gerardo R. Vasta Copyright © 2015 F. Gomez´ and A. Skovgaard. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Dinoflagellate infections have been reported for different protistan and animal hosts. We report, for the first time, the association between a dinoflagellate parasite and a rotifer host, tentatively Synchaeta sp. (Rotifera), collected from the port of Valencia, NW Mediterranean Sea. The rotifer contained a sporangium with 100–200 thecate dinospores that develop synchronically through palintomic sporogenesis. This undescribed dinoflagellate forms a new and divergent fast-evolved lineage that branches amongthe dinokaryotic dinoflagellates. 1. Introduction form independent lineages with no evident relation to other dinoflagellates [12]. In this study, we describe a new lineage of The alveolates (or Alveolata) are a major lineage of protists an undescribed parasitic dinoflagellate that largely diverged divided into three main phyla: ciliates, apicomplexans, and from other known dinoflagellates. -
Protist Phylogeny and the High-Level Classification of Protozoa
Europ. J. Protistol. 39, 338–348 (2003) © Urban & Fischer Verlag http://www.urbanfischer.de/journals/ejp Protist phylogeny and the high-level classification of Protozoa Thomas Cavalier-Smith Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, UK; E-mail: [email protected] Received 1 September 2003; 29 September 2003. Accepted: 29 September 2003 Protist large-scale phylogeny is briefly reviewed and a revised higher classification of the kingdom Pro- tozoa into 11 phyla presented. Complementary gene fusions reveal a fundamental bifurcation among eu- karyotes between two major clades: the ancestrally uniciliate (often unicentriolar) unikonts and the an- cestrally biciliate bikonts, which undergo ciliary transformation by converting a younger anterior cilium into a dissimilar older posterior cilium. Unikonts comprise the ancestrally unikont protozoan phylum Amoebozoa and the opisthokonts (kingdom Animalia, phylum Choanozoa, their sisters or ancestors; and kingdom Fungi). They share a derived triple-gene fusion, absent from bikonts. Bikonts contrastingly share a derived gene fusion between dihydrofolate reductase and thymidylate synthase and include plants and all other protists, comprising the protozoan infrakingdoms Rhizaria [phyla Cercozoa and Re- taria (Radiozoa, Foraminifera)] and Excavata (phyla Loukozoa, Metamonada, Euglenozoa, Percolozoa), plus the kingdom Plantae [Viridaeplantae, Rhodophyta (sisters); Glaucophyta], the chromalveolate clade, and the protozoan phylum Apusozoa (Thecomonadea, Diphylleida). Chromalveolates comprise kingdom Chromista (Cryptista, Heterokonta, Haptophyta) and the protozoan infrakingdom Alveolata [phyla Cilio- phora and Miozoa (= Protalveolata, Dinozoa, Apicomplexa)], which diverged from a common ancestor that enslaved a red alga and evolved novel plastid protein-targeting machinery via the host rough ER and the enslaved algal plasma membrane (periplastid membrane). -
The Revised Classification of Eukaryotes
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/231610049 The Revised Classification of Eukaryotes Article in Journal of Eukaryotic Microbiology · September 2012 DOI: 10.1111/j.1550-7408.2012.00644.x · Source: PubMed CITATIONS READS 961 2,825 25 authors, including: Sina M Adl Alastair Simpson University of Saskatchewan Dalhousie University 118 PUBLICATIONS 8,522 CITATIONS 264 PUBLICATIONS 10,739 CITATIONS SEE PROFILE SEE PROFILE Christopher E Lane David Bass University of Rhode Island Natural History Museum, London 82 PUBLICATIONS 6,233 CITATIONS 464 PUBLICATIONS 7,765 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Biodiversity and ecology of soil taste amoeba View project Predator control of diversity View project All content following this page was uploaded by Smirnov Alexey on 25 October 2017. The user has requested enhancement of the downloaded file. The Journal of Published by the International Society of Eukaryotic Microbiology Protistologists J. Eukaryot. Microbiol., 59(5), 2012 pp. 429–493 © 2012 The Author(s) Journal of Eukaryotic Microbiology © 2012 International Society of Protistologists DOI: 10.1111/j.1550-7408.2012.00644.x The Revised Classification of Eukaryotes SINA M. ADL,a,b ALASTAIR G. B. SIMPSON,b CHRISTOPHER E. LANE,c JULIUS LUKESˇ,d DAVID BASS,e SAMUEL S. BOWSER,f MATTHEW W. BROWN,g FABIEN BURKI,h MICAH DUNTHORN,i VLADIMIR HAMPL,j AARON HEISS,b MONA HOPPENRATH,k ENRIQUE LARA,l LINE LE GALL,m DENIS H. LYNN,n,1 HILARY MCMANUS,o EDWARD A. D. -
Prevalent Ciliate Symbiosis on Copepods: High Genetic Diversity and Wide Distribution Detected Using Small Subunit Ribosomal RNA Gene
Prevalent Ciliate Symbiosis on Copepods: High Genetic Diversity and Wide Distribution Detected Using Small Subunit Ribosomal RNA Gene Zhiling Guo1,2, Sheng Liu1, Simin Hu1, Tao Li1, Yousong Huang4, Guangxing Liu4, Huan Zhang2,4*, Senjie Lin2,3* 1 Key Laboratory of Marine Bio-resources Sustainable Utilization, South China Sea Institute of Oceanology, Chinese Academy of Science, Guangzhou, Guangdong, China, 2 Department of Marine Sciences, University of Connecticut, Groton, Connecticut, United States of America, 3 Marine Biodiversity and Global Change Laboratory, Xiamen University, Xiamen, Fujian, China, 4 Department of Environmental Science, Ocean University of China, Qingdao, Shandong, China Abstract Toward understanding the genetic diversity and distribution of copepod-associated symbiotic ciliates and the evolutionary relationships with their hosts in the marine environment, we developed a small subunit ribosomal RNA gene (18S rDNA)- based molecular method and investigated the genetic diversity and genotype distribution of the symbiotic ciliates on copepods. Of the 10 copepod species representing six families collected from six locations of Pacific and Atlantic Oceans, 9 were found to harbor ciliate symbionts. Phylogenetic analysis of the 391 ciliate 18S rDNA sequences obtained revealed seven groups (ribogroups), six (containing 99% of all the sequences) belonging to subclass Apostomatida, the other clustered with peritrich ciliate Vorticella gracilis. Among the Apostomatida groups, Group III were essentially identical to Vampyrophrya pelagica, and the other five groups represented the undocumented ciliates that were close to Vampyrophrya/ Gymnodinioides/Hyalophysa. Group VI ciliates were found in all copepod species but one (Calanus sinicus), and were most abundant among all ciliate sequences obtained, indicating that they are the dominant symbiotic ciliates universally associated with copepods. -
Ellobiopsids of the Genus Thalassomyces Are Alveolates
J. Eukaryot. Microbiol., 51(2), 2004 pp. 246±252 q 2004 by the Society of Protozoologists Ellobiopsids of the Genus Thalassomyces are Alveolates JEFFREY D. SILBERMAN,a,b1 ALLEN G. COLLINS,c,2 LISA-ANN GERSHWIN,d,3 PATRICIA J. JOHNSONa and ANDREW J. ROGERe aDepartment of Microbiology, Immunology, and Molecular Genetics, University of California at Los Angeles, California, USA, and bInstitute of Geophysics and Planetary Physics, University of California at Los Angeles, California, USA, and cEcology, Behavior and Evolution Section, Division of Biology, University of California, La Jolla, California, USA, and dDepartment of Integrative Biology and Museum of Paleontology, University of California, Berkeley, California, USA, and eCanadian Institute for Advanced Research, Program in Evolutionary Biology, Genome Atlantic, Department of Biochemistry and Molecular Biology, Dalhousie University, Halifax, Nova Scotia, Canada ABSTRACT. Ellobiopsids are multinucleate protist parasites of aquatic crustaceans that possess a nutrient absorbing `root' inside the host and reproductive structures that protrude through the carapace. Ellobiopsids have variously been af®liated with fungi, `colorless algae', and dino¯agellates, although no morphological character has been identi®ed that de®nitively allies them with any particular eukaryotic lineage. The arrangement of the trailing and circumferential ¯agella of the rarely observed bi-¯agellated `zoospore' is reminiscent of dino¯agellate ¯agellation, but a well-organized `dinokaryotic nucleus' has never been observed. Using small subunit ribosomal RNA gene sequences from two species of Thalassomyces, phylogenetic analyses robustly place these ellobiopsid species among the alveolates (ciliates, apicomplexans, dino¯agellates and relatives) though without a clear af®liation to any established alveolate lineage. Our trees demonstrate that Thalassomyces fall within a dino¯agellate 1 apicomplexa 1 Perkinsidae 1 ``marine alveolate group 1'' clade, clustering most closely with dino¯agellates. -
The Windblown: Possible Explanations for Dinophyte DNA
bioRxiv preprint doi: https://doi.org/10.1101/2020.08.07.242388; this version posted August 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. The windblown: possible explanations for dinophyte DNA in forest soils Marc Gottschlinga, Lucas Czechb,c, Frédéric Mahéd,e, Sina Adlf, Micah Dunthorng,h,* a Department Biologie, Systematische Botanik und Mykologie, GeoBio-Center, Ludwig- Maximilians-Universität München, D-80638 Munich, Germany b Computational Molecular Evolution Group, Heidelberg Institute for Theoretical Studies, D- 69118 Heidelberg, Germany c Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA d CIRAD, UMR BGPI, F-34398, Montpellier, France e BGPI, Université de Montpellier, CIRAD, IRD, Montpellier SupAgro, Montpellier, France f Department of Soil Sciences, College of Agriculture and Bioresources, University of Saskatchewan, Saskatoon, S7N 5A8, SK, Canada g Eukaryotic Microbiology, Faculty of Biology, Universität Duisburg-Essen, D-45141 Essen, Germany h Centre for Water and Environmental Research (ZWU), Universität Duisburg-Essen, D- 45141 Essen, Germany Running title: Dinophytes in soils Correspondence M. Dunthorn, Eukaryotic Microbiology, Faculty of Biology, Universität Duisburg-Essen, Universitätsstrasse 5, D-45141 Essen, Germany Telephone number: +49-(0)-201-183-2453; email: [email protected] bioRxiv preprint doi: https://doi.org/10.1101/2020.08.07.242388; this version posted August 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
Instituto Nacional De Pesquisas Da Amazônia - Inpa Programa De Pós-Graduação Do Inpa Programa De Pós-Graduação Em Biologia De Água Doce E Pesca Interior
INSTITUTO NACIONAL DE PESQUISAS DA AMAZÔNIA - INPA PROGRAMA DE PÓS-GRADUAÇÃO DO INPA PROGRAMA DE PÓS-GRADUAÇÃO EM BIOLOGIA DE ÁGUA DOCE E PESCA INTERIOR FILOGENIA E BIOGEOGRAFIA DOS DIAPTOMINAE NEOTROPICAIS DANIEL PREVIATTELLI Manaus, Amazonas Septembro/2010 Livros Grátis http://www.livrosgratis.com.br Milhares de livros grátis para download. INSTITUTO NACIONAL DE PESQUISAS DA AMAZÔNIA - INPA PROGRAMA DE PÓS-GRADUAÇÃO DO INPA PROGRAMA DE PÓS-GRADUAÇÃO EM BIOLOGIA DE ÁGUA DOCE E PESCA INTERIOR FILOGENIA E BIOGEOGRAFIA DOS DIAPTOMINAE NEOTROPICAIS DANIEL PREVIATTELLI Orientador: Edinaldo Nelson dos Santos-Silva Tese apresentada para como parte dos requisitos para a obtenção do títulode Doutor em Biologia de Água Doce e Pesca Interior. Manaus, Amazonas Septembro/2010 ___________________________________________________________________ Financiamento: CAPES; CNPq. I II III Ficha catalográfica DANIEL PREVIATTELLI Filogenia e Biogeografia dos Diaptominae Neotropicais. (200) p.: 100 il. Tese – INPA. 1. Taxonomia de grupos recentes 2. Calanoida 3. Delta 4. Sistemática filogenética 5. Região Neotropical CDD19.ed. Sinopse Foi estudada a filogenia e a biogeografia dos Diaptomidae (Crustacea: Copepoda) na região Neotropical. A relação de parentesco entre as espécies foi proposta pela primeira vez para esse grupo e os limites de distribuição determinados com base em coletas recentes, recuperação e consulta de material e revisão da literatura. As implicações para a história evolutiva o grupo foram discutidas com base na comparação dos padrões de distribuição com a respectiva topologia filogenética encontrada. Palavras-chave: Filogenia, Copepoda, análise de trilha, pan-biogeografia. IV Agradecimentos Agradeço ao curso BADPI, na pessoa da Dra. Angela Maria Bezerra Varella. Também agradeço ao Conselho Nacional de Desenvolvimento Científico e Tecnológico – CNPq, e Coordenação de Aperfeiçoamento de Pessoal de Nível Ensino Superior - CAPES pelo finenciamento. -
VII EUROPEAN CONGRESS of PROTISTOLOGY in Partnership with the INTERNATIONAL SOCIETY of PROTISTOLOGISTS (VII ECOP - ISOP Joint Meeting)
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/283484592 FINAL PROGRAMME AND ABSTRACTS BOOK - VII EUROPEAN CONGRESS OF PROTISTOLOGY in partnership with THE INTERNATIONAL SOCIETY OF PROTISTOLOGISTS (VII ECOP - ISOP Joint Meeting) Conference Paper · September 2015 CITATIONS READS 0 620 1 author: Aurelio Serrano Institute of Plant Biochemistry and Photosynthesis, Joint Center CSIC-Univ. of Seville, Spain 157 PUBLICATIONS 1,824 CITATIONS SEE PROFILE Some of the authors of this publication are also working on these related projects: Use Tetrahymena as a model stress study View project Characterization of true-branching cyanobacteria from geothermal sites and hot springs of Costa Rica View project All content following this page was uploaded by Aurelio Serrano on 04 November 2015. The user has requested enhancement of the downloaded file. VII ECOP - ISOP Joint Meeting / 1 Content VII ECOP - ISOP Joint Meeting ORGANIZING COMMITTEES / 3 WELCOME ADDRESS / 4 CONGRESS USEFUL / 5 INFORMATION SOCIAL PROGRAMME / 12 CITY OF SEVILLE / 14 PROGRAMME OVERVIEW / 18 CONGRESS PROGRAMME / 19 Opening Ceremony / 19 Plenary Lectures / 19 Symposia and Workshops / 20 Special Sessions - Oral Presentations / 35 by PhD Students and Young Postdocts General Oral Sessions / 37 Poster Sessions / 42 ABSTRACTS / 57 Plenary Lectures / 57 Oral Presentations / 66 Posters / 231 AUTHOR INDEX / 423 ACKNOWLEDGMENTS-CREDITS / 429 President of the Organizing Committee Secretary of the Organizing Committee Dr. Aurelio Serrano -
Proceedings of the 3Rd GBIF Science Symposium Brussels, 18-19 April 2005
Proceedings of the 3rd GBIF Science Symposium Brussels, 18-19 April 2005 Tropical Biodiversity: Science, Data, Conservation Edited by H. Segers, P. Desmet & E. Baus Proceedings of the 3rd GBIF Science Symposium Brussels, 18-19 April 2005 Tropical Biodiversity: Science, Data, Conservation Edited by H. Segers, P. Desmet & E. Baus Recommended form of citation Segers, H., P. Desmet & E. Baus, 2006. ‘Tropical Biodiversity: Science, Data, Conservation’. Proceedings of the 3rd GBIF Science Symposium, Brussels, 18-19 April 2005. Organisation - Belgian Biodiversity Platform - Belgian Science Policy In cooperation with: - Belgian Clearing House Mechanism of the CBD - Royal Belgian Institute of Natural Sciences - Global Biodiversity Information Facility Conference sponsors - Belgian Science Policy 1 Table of contents Research, collections and capacity building on tropical biological diversity at the Royal Belgian Institute of Natural Sciences .........................................................................................5 Van Goethem, J.L. Research, Collection Management, Training and Information Dissemination on Biodiversity at the Royal Museum for Central Africa .......................................................................................26 Gryseels, G. The collections of the National Botanic Garden of Belgium ....................................................30 Rammeloo, J., D. Diagre, D. Aplin & R. Fabri The World Federation for Culture Collections’ role in managing tropical diversity..................44 Smith, D. Conserving -
Investigations Into the Transcriptome of the Toxigenic Marine Dinoflagellate Alexandrium Minutum
Investigations into the transcriptome of the toxigenic marine dinoflagellate Alexandrium minutum Dissertation zur Erlangung des akademischen Grades eines Doktors der Naturwissenschaften -Dr. rer. nat.- Fachbereich 2 (Biologie/Chemie) Universität Bremen vorgelegt von Ines Yang September 2009 1. Gutachter: Prof. Dr. Ulrich Bathmann Alfred-Wegener-Institut für Polar- und Meeresforschung, Bremerhaven u. Universität Bremen 2. Gutachter: Prof. Dr. Dieter Wolf-Gladrow Alfred-Wegener-Institut für Polar- und Meeresforschung, Bremerhaven u. Universität Bremen Überarbeitete und aktualisierte Version, vorgelegt im Oktober 2010 Contents 1 Summary .............................................................................................................................................1 2 Zusammenfassung ..............................................................................................................................3 3 Introduction ........................................................................................................................................5 3.1 Dinoflagellates – an unusual group of eukaryotes .......................................................................5 3.2 Phytoplankton Blooms................................................................................................................12 3.3 The genus Alexandrium ..............................................................................................................13 3.4 Paralytic Shellfish Poisoning (PSP) toxins ................................................................................15 -
Systema Naturae. the Classification of Living Organisms
Systema Naturae. The classification of living organisms. c Alexey B. Shipunov v. 5.601 (June 26, 2007) Preface Most of researches agree that kingdom-level classification of living things needs the special rules and principles. Two approaches are possible: (a) tree- based, Hennigian approach will look for main dichotomies inside so-called “Tree of Life”; and (b) space-based, Linnaean approach will look for the key differences inside “Natural System” multidimensional “cloud”. Despite of clear advantages of tree-like approach (easy to develop rules and algorithms; trees are self-explaining), in many cases the space-based approach is still prefer- able, because it let us to summarize any kinds of taxonomically related da- ta and to compare different classifications quite easily. This approach also lead us to four-kingdom classification, but with different groups: Monera, Protista, Vegetabilia and Animalia, which represent different steps of in- creased complexity of living things, from simple prokaryotic cell to compound Nature Precedings : doi:10.1038/npre.2007.241.2 Posted 16 Aug 2007 eukaryotic cell and further to tissue/organ cell systems. The classification Only recent taxa. Viruses are not included. Abbreviations: incertae sedis (i.s.); pro parte (p.p.); sensu lato (s.l.); sedis mutabilis (sed.m.); sedis possi- bilis (sed.poss.); sensu stricto (s.str.); status mutabilis (stat.m.); quotes for “environmental” groups; asterisk for paraphyletic* taxa. 1 Regnum Monera Superphylum Archebacteria Phylum 1. Archebacteria Classis 1(1). Euryarcheota 1 2(2). Nanoarchaeota 3(3). Crenarchaeota 2 Superphylum Bacteria 3 Phylum 2. Firmicutes 4 Classis 1(4). Thermotogae sed.m. 2(5).