Tip 36: Try a New Shell
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Shell Scripting with Bash
Introduction to Shell Scripting with Bash Charles Jahnke Research Computing Services Information Services & Technology Topics for Today ● Introductions ● Basic Terminology ● How to get help ● Command-line vs. Scripting ● Variables ● Handling Arguments ● Standard I/O, Pipes, and Redirection ● Control Structures (loops and If statements) ● SCC Job Submission Example Research Computing Services Research Computing Services (RCS) A group within Information Services & Technology at Boston University provides computing, storage, and visualization resources and services to support research that has specialized or highly intensive computation, storage, bandwidth, or graphics requirements. Three Primary Services: ● Research Computation ● Research Visualization ● Research Consulting and Training Breadth of Research on the Shared Computing Cluster (SCC) Me ● Research Facilitator and Administrator ● Background in biomedical engineering, bioinformatics, and IT systems ● Offices on both CRC and BUMC ○ Most of our staff on the Charles River Campus, some dedicated to BUMC ● Contact: [email protected] You ● Who has experience programming? ● Using Linux? ● Using the Shared Computing Cluster (SCC)? Basic Terminology The Command-line The line on which commands are typed and passed to the shell. Username Hostname Current Directory [username@scc1 ~]$ Prompt Command Line (input) The Shell ● The interface between the user and the operating system ● Program that interprets and executes input ● Provides: ○ Built-in commands ○ Programming control structures ○ Environment -
Beginning Portable Shell Scripting from Novice to Professional
Beginning Portable Shell Scripting From Novice to Professional Peter Seebach 10436fmfinal 1 10/23/08 10:40:24 PM Beginning Portable Shell Scripting: From Novice to Professional Copyright © 2008 by Peter Seebach All rights reserved. No part of this work may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopying, recording, or by any information storage or retrieval system, without the prior written permission of the copyright owner and the publisher. ISBN-13 (pbk): 978-1-4302-1043-6 ISBN-10 (pbk): 1-4302-1043-5 ISBN-13 (electronic): 978-1-4302-1044-3 ISBN-10 (electronic): 1-4302-1044-3 Printed and bound in the United States of America 9 8 7 6 5 4 3 2 1 Trademarked names may appear in this book. Rather than use a trademark symbol with every occurrence of a trademarked name, we use the names only in an editorial fashion and to the benefit of the trademark owner, with no intention of infringement of the trademark. Lead Editor: Frank Pohlmann Technical Reviewer: Gary V. Vaughan Editorial Board: Clay Andres, Steve Anglin, Ewan Buckingham, Tony Campbell, Gary Cornell, Jonathan Gennick, Michelle Lowman, Matthew Moodie, Jeffrey Pepper, Frank Pohlmann, Ben Renow-Clarke, Dominic Shakeshaft, Matt Wade, Tom Welsh Project Manager: Richard Dal Porto Copy Editor: Kim Benbow Associate Production Director: Kari Brooks-Copony Production Editor: Katie Stence Compositor: Linda Weidemann, Wolf Creek Press Proofreader: Dan Shaw Indexer: Broccoli Information Management Cover Designer: Kurt Krames Manufacturing Director: Tom Debolski Distributed to the book trade worldwide by Springer-Verlag New York, Inc., 233 Spring Street, 6th Floor, New York, NY 10013. -
Introduction to Unix
Introduction to Unix Rob Funk <[email protected]> University Technology Services Workstation Support http://wks.uts.ohio-state.edu/ University Technology Services Course Objectives • basic background in Unix structure • knowledge of getting started • directory navigation and control • file maintenance and display commands • shells • Unix features • text processing University Technology Services Course Objectives Useful commands • working with files • system resources • printing • vi editor University Technology Services In the Introduction to UNIX document 3 • shell programming • Unix command summary tables • short Unix bibliography (also see web site) We will not, however, be covering these topics in the lecture. Numbers on slides indicate page number in book. University Technology Services History of Unix 7–8 1960s multics project (MIT, GE, AT&T) 1970s AT&T Bell Labs 1970s/80s UC Berkeley 1980s DOS imitated many Unix ideas Commercial Unix fragmentation GNU Project 1990s Linux now Unix is widespread and available from many sources, both free and commercial University Technology Services Unix Systems 7–8 SunOS/Solaris Sun Microsystems Digital Unix (Tru64) Digital/Compaq HP-UX Hewlett Packard Irix SGI UNICOS Cray NetBSD, FreeBSD UC Berkeley / the Net Linux Linus Torvalds / the Net University Technology Services Unix Philosophy • Multiuser / Multitasking • Toolbox approach • Flexibility / Freedom • Conciseness • Everything is a file • File system has places, processes have life • Designed by programmers for programmers University Technology Services -
Ardpower Documentation Release V1.2.0
ardPower Documentation Release v1.2.0 Anirban Roy Das Sep 27, 2017 Contents 1 Introduction 1 2 Screenshot 3 3 Documentaion 5 3.1 Overview.................................................5 3.2 Installation................................................7 3.3 Usage................................................... 12 4 Indices and tables 13 i ii CHAPTER 1 Introduction Its a custom Oh-My-Zsh Theme inspired by many custom themes suited for a perfect ZSH Environment under Byobu with Tmux Backend. 1 ardPower Documentation, Release v1.2.0 2 Chapter 1. Introduction 3 ardPower Documentation, Release v1.2.0 CHAPTER 2 Screenshot 4 Chapter 2. Screenshot CHAPTER 3 Documentaion You can also find PDF version of the documentation here. Overview We will start with understanding the individual components of an entire CLI. Generally we don’t put much attention to what we do. We just fire up a terminal or some say sheel and start typing our commands and get the result. That’s all. But there are a lot of things that goes behind all this. Terminal The very first component is the Terminal. So what is a Terminal? A terminal emulator, terminal application, term, or tty for short, is a program that emulates a video ter- minal within some other display architecture. Though typically synonymous with a shell or text terminal, the term terminal covers all remote terminals, including graphical interfaces. A terminal emulator inside a graphical user interface is often called a terminal window.A terminal window allows the user access to a text terminal and all its applications such as command-line interfaces (CLI) and text user interface (TUI) applications. -
Bash Guide for Beginners
Bash Guide for Beginners Machtelt Garrels Garrels BVBA <tille wants no spam _at_ garrels dot be> Version 1.11 Last updated 20081227 Edition Bash Guide for Beginners Table of Contents Introduction.........................................................................................................................................................1 1. Why this guide?...................................................................................................................................1 2. Who should read this book?.................................................................................................................1 3. New versions, translations and availability.........................................................................................2 4. Revision History..................................................................................................................................2 5. Contributions.......................................................................................................................................3 6. Feedback..............................................................................................................................................3 7. Copyright information.........................................................................................................................3 8. What do you need?...............................................................................................................................4 9. Conventions used in this -
Bash Tutorial
Bash Shell Lecturer: Prof. Andrzej (AJ) Bieszczad Email: [email protected] Phone: 818-677-4954 Bash Shell The shell of Linux • Linux has a variety of different shells: – Bourne shell (sh), C shell (csh), Korn shell (ksh), TC shell (tcsh), Bour ne Again shell (bash). • Certainly the most popular shell is “bash”. Bash is an sh- compatible shell that incorporates useful features from the Korn shell (ksh) and C shell (csh). • It is intended to conform to the IEEE POSIX P1003.2/ISO 9945.2 Shell and Tools standard. • It offers functional improvements over sh for both programming and interactive use. Bash Shell Programming or Scripting ? • bash is not only an excellent command line shell, but a scripting language in itself. Shell scripting allows us to use the shell's abilities and to automate a lot of tasks that would otherwise require a lot of commands. • Difference between programming and scripting languages: – Programming languages are generally a lot more powerful and a lot faster than scriptin g languages. Programming languages generally start from source code and are compil ed into an executable. This executable is not easily ported into different operating syste ms. – A scripting language also starts from source code, but is not compiled into an executabl e. Rather, an interpreter reads the instructions in the source file and executes each inst ruction. Interpreted programs are generally slower than compiled programs. The main a dvantage is that you can easily port the source file to any operating system. bash is a s cripting language. Other examples of scripting languages are Perl, Lisp, and Tcl. -
Unix Shell Programming – by Dinesh Kumar S
1 Unix Shell Programming – by Dinesh Kumar S PDF by http://www.k2pdf.com Contents Chapters Topic Page no. Chapter 1 Introduction 3 Chapter 2 SSH Client 4 Chapter 3 Unix Shells 8 Chapter 4 Text Editors 11 Chapter 5 A Beginning to Shell Scripting 19 Chapter 6 Operators 33 Chapter 7 Variables Manipulation (Advance) 39 Chapter 8 Conditional Statements 43 Chapter 9 Looping Statements 47 Chapter 10 Control Statements 74 Chapter 11 Functions 79 2 Unix Shell Programming – by Dinesh Kumar S Chapter 1 Introduction Linux : It is an operating system based on UNIX . Kernel : It is the backbone of Linux OS, which is used to manage resources of Linux OS like memory, I/O, software, hardware management processes. User Shell Script Kernel PC h/w User writes script. Script contains instructions. Kernel interprets the instruction in machine language. As per the instruction kernel controls the PC hardware. Shell script : It’s a collection of OS commands or instructions. Advantages of Shell Script : Script is always a platform independent. Performance will be faster than programming languages. Very easy to debug. 3 Unix Shell Programming – by Dinesh Kumar S Chapter 2 SSH Client Secure Shell (or) SSH is a network protocol that is used to exchange or share information between two different networks. This is used on Linux & UNIX systems to access SHELL accounts. All the information exchanged/transmitted between networks is encrypted . It uses public key cryptography to authenticate remote computer user. Free Serial, Telnet, and SSH client Putty Tera Term Putty : It is a terminal emulator application which acts as client for SSH, Telnet, rLogin. -
Contextual Shell History Student: Bc
ASSIGNMENT OF MASTER’S THESIS Title: Contextual Shell History Student: Bc. Šimon Let Supervisor: Ing. Lukáš Bařinka Study Programme: Informatics Study Branch: System Programming Department: Department of Theoretical Computer Science Validity: Until the end of summer semester 2020/21 Instructions Analyze shell history features and existing shell history tools. Examine how users interact with shell and shell history. Design a shell history solution based on known and documented problems. Leverage the context of commands entered by the user. Use principles of user-centered design. Implement a shell history tool that is capable of recording shell history with command context, offers history entries to the user based on the current context and provides means to search the recorded history. Suggest meaningful metrics (e.g. based on distance in history or number of characters needed to get searched command from history). Based on chosen metrics evaluate the usefulness of the recommended history entries. Perform user testing or testing based on real user data to find out the user experience of the solution. References Will be provided by the supervisor. doc. Ing. Jan Janoušek, Ph.D. doc. RNDr. Ing. Marcel Jiřina, Ph.D. Head of Department Dean Prague January 17, 2020 Master’s thesis Contextual Shell History Bc. Simonˇ Let Department of theoretical computer science Supervisor: Ing. Luk´aˇsBaˇrinka May 28, 2020 Acknowledgements I would like to thank my supervisor Ing. Luk´aˇsBaˇrinkafor his guidance and advice. His insights and expertise shaped this work significantly. Next, my thanks go to my colleagues and friends for their valuable feed- back. They helped me spot my personal biases and assumptions rooted in my personal shell workflows. -
Shell Scripting, Globs, and Ranges
SHELL SCRIPTING AND CUSTOMIZATION GPI F20 · Emmanuel & Sayan PET TAX Carole Bashkin! Ran her program, bashed it Can’t convince her that bash isn’t awesome Pipin’, globbin’, multitaskin’ What’s happen? Carole Bashkin! WHAT IS A SHELL? ● A shell is the outermost layer that allows a user to interact with the operating system. ● For a programmer, it is the program that powers your terminal. ● We will focus on Unix shells, command-line interpreters for Unix-like operating systems. ● They come in many flavors. ○ zsh, bash, fish, etc. COMMAND CENTER ● Show contents of a file cat path ● Show contents of a directory ls ● Change directories cd path ● Remove a file rm src ● Move/rename a file mv src dst ● Copy a file cp src new_name ● Execute a binary ./name ● Print something echo “Hello, world!” OVER, OVER, AND OVER AGAIN ● Sometimes, you want to run the same set of commands multiple times. ○ Compiling and testing your code ○ Renaming a bunch of files ○ Initializing your git repos with a .gitignore ○ Archiving your new favorite xkcd comics ○ Setting up your dev environment on a new machine ● Shell scripts allow you to run a sequence of shell commands from a file. WRITE YOUR OWN SHELL SCRIPT ● Each script begins with a shebang followed by the commands you want to execute. ○ #!/bin/zsh ○ #!/bin/bash ○ #!/usr/bin/env python3 ● Add executable permissions to your file. ○ chmod +x script.sh ○ This changes the mode of the file to an executable. ● Run the script! ○ ./script.sh FUNCTIONS ARE SHELL SCRIPTS ● Apart from interfacing with the operating system, they support other programming constructs as well. -
Lmod Documentation Release 8.5.16
Lmod Documentation Release 8.5.16 Robert McLay Sep 24, 2021 Contents 1 PURPOSE 1 2 OVERVIEW 3 3 Lmod Web Sites 5 4 Introduction to Lmod 7 5 Installing Lmod 27 6 Advanced Topics 55 7 Topics yet to be written 119 8 Indices and tables 121 i ii CHAPTER 1 PURPOSE Lmod is a Lua based module system that easily handles the MODULEPATH Hierarchical problem. Environment Modules provide a convenient way to dynamically change the users’ environment through modulefiles. This includes easily adding or removing directories to the PATH environment variable. Modulefiles for Library packages provide environment variables that specify where the library and header files can be found. 1 Lmod Documentation, Release 8.5.16 2 Chapter 1. PURPOSE CHAPTER 2 OVERVIEW This guide is written to explain what Environment Modules are and why they are very useful for both users and system administrators. Lmod is an implementation of Environment Modules, much of what is said here is true for any environment modules system but there are many features which are unique to Lmod. Environment Modules provide a convenient way to dynamically change the users’ environment through modulefiles. This includes easily adding or removing directories to the PATH environment variable. A modulefile contains the necessary information to allow a user to run a particular application or provide access to a particular library. All of this can be done dynamically without logging out and back in. Modulefiles for applications modify the user’s path to make access easy. Modulefiles for Library packages provide environment variables that specify where the library and header files can be found. -
Introduction to Unix
Introduction to Unix BorisBoris KonevKonev [email protected] http://www.csc.liv.ac.uk/~konev Important information Instructor: – Boris Konev – Office: 1.12 – Email: [email protected] – Web resources: www.csc.liv.ac.uk/~konev/COMP110 NoNo lectureslectures onon Monday!!Monday!! Objectives • Basic structure of the operating system • What makes Unix special? • Unix System Design • Essential commands • Essential concepts • Shells • Shell programming • Text processing • Unix utilities Why Bother Studying Unix? • Most powerful computers (supercomputers) use the Unix operating system • Unix runs the Internet • Unix is used as an embedded system in hardware – networking, user appliances (DVD players) • A knowledge of Unix is likely to be helpful in your future career, regardless of where you pursue it. History of Unix 1960s “multics” project (MIT, GE, AT&T) 1970s AT&T Bell Labs 1970s/80s UC Berkeley 1980s DOS imitated many Unix ideas Commercial Unix fragmentation GNU Project 1990s Linux now Unix is widespread and available from many sources, both free and commercial Unix Systems • Commercial – SunOS/Solaris Sun Microsystems – Digital Unix (Tru64) Digital/Compaq – HP-UX Hewlett Packard – Irix SGI – UNICOS Cray – Mac OS X Apple – … • Free – NetBSD, FreeBSD, … – Linux – … What makes Unix so special? (1) • Portability (runs on almost every hardware) • Old and popular – it is easy to find information and get help • Simplicity, elegance & flexibility • Time-sharing: multi-tasking & multi-user environment • Unix is very stable – computers running -
Shell Scripting
Running Applications on HPC Systems (Using the Shell) Michael Griffiths and Norbert Gyenge Corporate Information and Computing Services The University of Sheffield www.sheffield.ac.uk/cics/research SESSION OUTLINE! 1. Software on the HPC Systems 2. Why use shell programs 3. Basics of shell programming 4. Using variables and parameters 5. User Input during shell script execution 6. Aliases SOFTWARE ON THE HPC SYSTEMS For information on software check the link http://www.sheffield.ac.uk/cics/research/hpc/ Ganglia Portland, GNU,Intel CentOS 64bit Sun of Grid Linux Engine Intel Haswell OpenMPI E5-2630-v3 RUNNING PROGRAMS ON HPC • The login node is the gateway to the cluster of worker nodes and the only one where direct logging in is allowed. • Login node’s main purpose is to allow access to the worker nodes but NOT to run cpu intensive programs. • All cpu-intensive computations must be performed on the worker nodes. This is achieved by the srun --pty bash -i command for the interactive jobs and sbatch command for the batch jobs.! • Once you log into the HPC system, taking advantage of the power of a worker node for interactive work is done simply by typing srun --pty bash -i and working in the new shell window that is opened. This what appears to be a trivial task has would in fact have queried all the worker nodes for you and started a session on the least loaded worker in the cluster. • The next set of slides assume that you are already working on one of the worker nodes.