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Biology 2005-2011 Scholarship BIOLOGY 2005-2011 SCHOLARSHIP BOOKS: Chabora, P. C. 2007. The Laboratory and Lecture Synthesis, Second edition. Cengage (Thomson Publishing). 400p. Levinton, J.S., and J.R. Waldman. 2006. The Hudson River Ecosystem. Cambridge University Press, New York. 471p. Waldman, J. 2005. 100 Weird Ways to Catch Fish. Stackpole Books, Mechanicsburg, PA Waldman, J., K. Limburg, and D. Strayer. 2006. Hudson River Fishes and their Environment - American Fisheries Society Symposium 51. 365p. PEER-REVIEWED PUBLICATIONS: Alyokhin, A., M. Baker, D. Mota-Sanchez, G. Dively, and E. Grafius. 2008. Colorado potato beetle resistance to insecticides. American Journal of Potato Research 85: 395–413. Baker, M. B., 2005. Experience influences settling behavior in desert isopods, Hemilepistus reaumuri. Animal Behaviour 69: 1131-1138. Baker, M. B., Alyokhin, A., Dastur, S. A., Porter, A. H., and Ferro, D. N., 2005. Sperm precedence in overwintered Colorado potato beetle (Coleoptera: Chrysomelidae) and its implications for insecticide resistance management. Annals of the Entomological Society of America 98: 989-995. Baker, M. B., Alyokhin, A., Porter, A. H., D. N. Ferro, S. R. Dastur, and N. Galal, 2007. Persistence of costs of resistance to imidacloprid in the Colorado potato beetle, Leptinotarsa decemlineata (Say). Journal of Economic Entomology 100: 1871-1879. Baker, M. B., S. R. Dastur, Troy Wong and B. D. Jaffe, 2008 Mating competition between Colorado potato beetles (Coleoptera: Chrysomelidae) resistant or susceptible to imidacloprid does not show cost of resistance. Annals of the Entomological Society of America 101: 371-377. Baker, M. B., and A. H. Porter, 2008. Use of sperm precedence to infer the overwintering cost of resistance in Colorado potato beetle. Agricultural and Forest Entomology 10: 181-187. Sharp, S. P., M. B. Baker, J. D. Hadfield, M. Simeoni and B. J. Hatchwell, 2008. Natal dispersal and recruitment in a social bird. Oikos 117: 1371-1379. Boissinot, S., and A.V. Furano, 2005. The recent evolution of human L1 retrotransposons. Cytogenetics and Genome Research 110: 402-406. Boissinot, S., J. Davis, A. Entezam, D. Petrov and A.V. Furano, 2006. Fitness cost of LINE-1 (L1) activity in humans. Proc. Natl. Acad. Sci. USA 103: 9590-9594. Graham, T. and S. Boissinot, 2006. The genomic distribution of L1 elements: the role of insertion bias and natural selection. Journal of Biomedicine and Biotechnology 2006: 1-5. Witherspoon, D.J., E.E. Marchani, W.S. Watkins, C.T. Ostler, S.P. Wooding, B.A. Anders, J.D. Fowlkes, S. Boissinot, A.V. Furano, A.R. Rogers, M.A. Batzer and L.B. Jorde (2006). Analysis of human population genetic structure and diversity comparing polymorphic L1 (LINE-1) and Alu insertions. Human heredity 62: 30-46. Ferguson W., S. Dvora, J. Gallo, A. Orth and S. Boissinot, 2008. Long term balancing selection at the West Nile virus resistance gene, Oas1b, maintains trans-specific polymorphism in the house mouse. Mol. Biol. Evol. 25(8): 1609-1618. Khan, H., A. Smit and S. Boissinot, 2006. The evolution of human LINE-1 retrotransposons since the origin of primates. Genome Research 16: 78-87. Song, M. and S. Boissinot, 2007. Selection against LINE-1 retrotransposons results principally from their ability to mediate ectopic recombination. Gene 390: 206-213. M. Song, R.M. Haralick, and S. Boissinot (2010). Efficient and exact maximum likelihood quantization of genomic features using dynamic programming. Int. J. Data mining and Bioinformatics 4(2): 123-141. Martin, S.L., W.-L.P. Li, A.V. Furano, and S. Boissinot, 2005. The structures of mouse and human L1 elements reflect their insertion mechanism. Cytogenetics and Genome Research 110: 223-228. Novick, P. H. Basta, M. Floumanhaft*, M. McClure, and S. Boissinot (2009). The evolutionary dynamics of non-LTR retrotransposons in the lizard Anolis carolinensis shows more similarity to fish than mammals. Mol. Biol. Evol. 26: 1811-1822. P. Novick*, J. Smith, D. Ray and S. Boissinot (2010). Independent and parallel lateral transfer of DNA transposons in tetrapod genomes. Gene 449: 85-94. K. Kusumi, R.J. Kulathinal, A. Abzhanov, S. Boissinot, N.G. Crawford, B.C. Faircloth, T.C. Glenn, J.B. Losos, D.B. Menke, T.J. Sanger, C. Schneider, J. Wade, J. Wilson-Rawls (2011). Developing a community-based genetic nomenclature and comparative analysis of the anole lizard. BMC Genomics 12: 554. J. Alfoldi, F. Di Palma, M. Grabherr,..S. Boissinot,..P. Novick [47 authors] (2011). The genome of Anolis carolinensis, the green anole lizard, and a comparative analysis with birds and mammals. Nature 477: 587- 591. P. Novick , J. Smith, M. Floumanhaft U, D. Ray and S. Boissinot (2011). The evolution and diversity of DNA transposons in the genome of the lizard Anolis carolinensis. M. Tollis and S. Boissinot (2011). The transposable element profile of the Anolis genome: how a lizard can provide insights into the evolution of vertebrate genome size and structure. Mobile Genetics Elements 1: 107-111. Dennehy, J.J., Y. Yang, N. Friedenberg and Turner, P.E. 2006. Bacteriophage migration via nematode vectors: host-parasite-consumer interactions in laboratory microcosms. Applied and Environmental Microbiology 72: 1974-1979. (Recommended Paper: Faculty of 1000). Dennehy, J.J., N. Friedenberg, R.D. Holt, and P.E. Turner, 2006. Viral ecology and the maintenance of novel host use. The American Naturalist 167: 429-439. (Recommended Paper: Faculty of 1000). Dennehy, J.J., S.T. Abedon, and P.E. Turner, 2007. Host density impacts relative fitness of bacteriophage φ6 genotypes in structured habitats. Evolution 61: 2516-2527 Dennehy, J.J., N. Friedenberg, Y. Yang, and P.E. Turner, 2007. Virus population extinction via ecological traps. Ecology Letters 10: 230–240. Dennehy, J.J. 2009. Bacteriophages as model organisms for virus emergence research. Trends in Microbiology, Published Online:16-SEP-2009, 10.1016/j.tim.2009.07.006. Evans, M.E.K. and J.J. Dennehy, 2005. Germ Banking: Bet hedging and variable release from egg and seed dormancy. Quarterly Review of Biology 80: 431-451. Monello, R.J., J.J Dennehy, D. Murray, and A.J. Wirsing, 2006. Species differences among native ranids in coping with an exotic invader, the bullfrog Rana catesbeiana. Journal of Herpetology 40: 403- 407. Katchikian, C.E., Dennehy, J.J. Vitek, C.J. & Livdahl, T.P. 2009. Climate and geographic trends in hatch delay of the treehole mosquito, Aedes triseriatus Say (Diptera: Culicidae). Journal of Vector Ecology 34: 119-128. Dennehy, J.J., Friedenberg, N.A., McBride, R.C., Holt, R.D. & Turner, P.E. 2010. Experimental evidence that source genetic variation drives pathogen emergence. Proceedings of the Royal Society, B. 277: 3113- 3121 DOI:10.1098/rspb.2010.0342. Khatchikian, C.E, Dennehy, J.J., Vitek, C.J., & Livdahl, T.P. 2010. Direct and indirect environmental effects on Aedes mosquitoes hatch traits. Evolutionary Ecology: DOI: 10.1007/s10682-010-9359-4 Li, J. & Dennehy, J.J. 2011. Differential bacteriophage mortality on exposure to copper. Applied and Environmental Microbiology, 77:6878-6883. Dennehy, J.J. & Wang, I-N. 2011. Factors influencing lysis time stochasticity in bacteriophage λ. BMC Microbiology, 11:174. Fath. K.R., 2005. Characterization of myosin–II binding to Golgi stacks in vitro. Cell Motility Cytoskeleton 60:222-235. Fath, K.R., 2006. Roles of the actin cytoskeleton and myosins in the endomembrane system. Advances in Molecular and Cell Biology 37:119-134. Spear, R.L., R. Tamayev, K.R. Fath and I.A. Banerjee, 2007. Templated growth of calcium phosphate on tyrosine derived microtubules and their biocompatibility. Colloids Surfaces B: Biointerfaces 60: 158-166. Avanzato, C.P., J.M. Follieri, I.A. Banerjee and K.R. Fath. 2009. Growth of amino acid catalyzed magnesium oxide- germanium oxide nanocomposites and their antibacterial applications. Journal of Composite Materials. 43:897-910. doi:10.1177/0021998309103158 Henricus, M.M., K.R. Fath, M.Z. Menzenski and I.A. Banerjee. 2009. Morphology controlled growth of chitosan-bound microtubes and a study of their biocompatibility and antibacterial activity. Macromolecular Bioscience. 9:317-325. doi:10.1002/mabi.200800220 Johnson, K.T., K. R. Fath, M. M. Henricus and I. A. Banerjee. 2009. Self-assembly and growth of smart cell-adhesive mucin-bound microtubes. Soft Materials. 7(1):21-36. Barnaby, S.N., S.M. Yu, K.R. Fath, A. Tsiola, O. Khalpari, I.A. Banerjee. 2011. Ellagic acid promoted biomimetic synthesis of shape-controlled silver nanochains. Nanotechnology. 22(22): 225605. doi:10.1088/0957-4484/22/22/225605 Barnaby, S.N., S.H. Frayne, K.R. Fath, I.A. Banerjee. 2011. Growth of Se nanoparticles on kinetin assemblies and their biocompatibility studies. Soft Materials. 9(4):313-334. doi:10.1080/1539445X.2010.516302 Barnaby, S.N., S.M. Yu, A. Tsiola, K.R. Fath, I.A. Banerjee. 2011. pH dependent spontaneous growth of ellagic acid assemblies for targeting HeLa cells. J. Nanosci. Nanotech. 11(9):7579-7586. doi:10.1166/jnn.2011.4709 Smoak, E.M., K.R. Fath, S.N. Barnaby, V.C. Grant, I.A. Banerjee. 2011. pH tunable self-assembly of chicoric acid and their biocompatibility studies. Supramolecular Chem. 23(9):ahead of print. doi:10.1080/10610278.2011.601309 Nakatsuka, N., S.N. Barnaby, K.R. Fath, I.A. Banerjee. 2011. Fabrication of collagen-elastin bound peptide nanotubes for mammalian cell attachment. J. Biomater. Sci. Polym. Ed. 22(18): ahead of print. doi: 10.1163/156856211X598229; PMID: 21967742 Fjerdingstad, E.J., 2005. Control of body size of Lasius niger ant sexuals – worker interests, genes and environment. Molecular Ecology 14:3123-3132. Fjerdingstad, E.J., and R.H. Crozier, 2006. The evolution of worker caste diversity in social insects. American Naturalist 167:390-400. Fjerdingstad, E.J., N. Schtickzelle, P. Manhes, , A. Gutierrez, and Clobert,, 2007. Evolution of dispersal and life history strategies - Tetrahymena ciliates.
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