Characterization of Membrane Metal Threads by Proteomics and Analysis of A

Total Page:16

File Type:pdf, Size:1020Kb

Characterization of Membrane Metal Threads by Proteomics and Analysis of A G Model CULHER-3372; No. of Pages 8 ARTICLE IN PRESS Journal of Cultural Heritage xxx (2017) xxx–xxx Available online at ScienceDirect www.sciencedirect.com Original article Characterization of membrane metal threads by proteomics and analysis of a 14th c. thread from an Italian textile a,b b b,∗ Aleksandra K. Popowich , Timothy P. Cleland , Caroline Solazzo a Department of Chemistry, University of Alberta, 11227 Saskatchewan Drive, Edmonton, Alberta T6G 2G2, Canada b Smithsonian’s Museum Conservation Institute, 4210 Silver Hill Road, Suitland, MD 20746, USA a r t i c l e i n f o a b s t r a c t Article history: Beginning in the 13th century, membrane metal threads – made out of animal skins (leather, parchment, Received 22 January 2018 and vellum) or membranous material (e.g., stomach, intestine) coated with metal – were the most popular Accepted 9 March 2018 variety of decorative metal threads used in European textiles. This work provides the proteomics ground- Available online xxx work for the identification of the species and the type of membrane used in the manufacture of a 14th century membrane gilded thread. A protocol for small sample extraction and nanoLC-Orbitrap MS/MS Keywords: analysis was first tested on standards of pig peritoneum and cow intestine metal-coated with or without Metal threads the presence of an egg adhesive. The proteomes of each membrane were characterized and compared Membrane by qualitative and quantitative bioinformatics; in addition to the predominant collagen proteins in each Collagen membrane type, minor tissue-specific proteins (e.g., smooth muscle proteins from intestine standards) Cyprus gold Proteomics were detected. Species-specific collagen peptides (i.e., from collagen I and collagen III) were confidently nanoLC-Orbitrap MS/MS identified to determine the species of origin, regardless of the application of metal and egg-based adhe- sives. Likewise, the thin layer of egg adhesive was successfully characterized with the detection of egg white (ovalbumin, ovotransferrin, lysozyme) and egg yolk (vitellogenin I, II, III) proteins. When applied to the thread from a 14th century Italian textile, this comprehensive methodology resulted in the iden- tification of seven collagen I and III peptides specific to cow, as well as other proteins suggesting that the ancient thread was made with intestine or stomach membrane without the use of an egg-based adhesive. © 2018 Elsevier Masson SAS. All rights reserved. 1. Introduction or flattened strips used directly in weaving, III. Metal wire or strips wound around a fiber core, IV. Metallic surface applied to organic Decorative metal threads have been extensively used for the wrappings (cellulosic or proteinaceous) wound around a fiber core, embellishment of textiles since ancient times. Many examples of and V. Metallic surface applied to organic strips (cellulosic or pro- metal threads exist in artifacts of cultural importance, and even teinaceous) without a fiber core [2–6]. earlier references to lavish gold and silver textiles can be found in Protein metal threads (Categories IV and V) were made from ancient texts, including a description of an ephod containing gold membranous tissues (e.g., stomach or intestinal walls of animals), in the Old Testament of the Bible (Exodus 39:2–3 “They hammered although skin has also been used as a substrate [2,7]. Research at the out thin sheets of gold and cut strands (. .)”). The popularity of end of the 19th century suggested that gilt membranes were made textiles woven or embroidered with metal threads persisted, and using the intestines from slaughtered animals [8]. Cow intestine their use is frequently associated with textiles intended to portray was similarly used in the manufacture of gold foil, also called gold- wealth or symbolic importance [1]. Metal threads were most often beater’s skin, during the same time period. Metal was applied to the made of gold, silver, or their alloys, often gilt, with the fabrication membrane with metal leaves or by mottle gilding, using either the method differing by region and changing over time [2]. Five cate- natural exudates of the organic membrane or an additional adhe- gories describing the use of metals in textiles have been defined: I. sive [7]. Reports have described the use of egg white, egg yolk, Metal applied with adhesive to already woven fabrics, II. Metal wire animal fat, animal and fish glues, gums, and clays as adhesives but to date, no scientific investigation has been carried to substantiate the presence and nature of the adhesives [4,7,9]. In category IV threads, also known as gilt membranes or Cyprus gold, the gilded membrane ∗ was cut into thin strips and wound around a silk or linen core [2]. No Corresponding author. E-mail address: [email protected] (C. Solazzo). adhesive was used between the gilded organic wrapping and the https://doi.org/10.1016/j.culher.2018.03.007 1296-2074/© 2018 Elsevier Masson SAS. All rights reserved. Please cite this article in press as: A.K. Popowich, et al., Characterization of membrane metal threads by proteomics and analysis of a 14th c. thread from an Italian textile, Journal of Cultural Heritage (2017), https://doi.org/10.1016/j.culher.2018.03.007 G Model CULHER-3372; No. of Pages 8 ARTICLE IN PRESS 2 A.K. Popowich et al. / Journal of Cultural Heritage xxx (2017) xxx–xxx Table 1 fiber core; instead, the twist of the metal membrane thread around Reference standards. the core was sufficient to keep the material in place. Migration of adhesive and wrapping material into the core fiber has however Reference Membrane Adhesive Fixation Metal leaf type been observed [5]. In category V threads the metal was applied to Pig untreated Peritoneum None None None membrane strips and used in textiles without being wound [4]. Pig gilt Peritoneum None None Gilt silver Membrane metal threads were first used in the 11th century by Pig gilt heat Peritoneum None Heat Gilt silver Pig gilt egg white Peritoneum Egg white None Gilt silver Levantine traders in Cyprus [1]. Beginning in the 13th century, gilt Pig gilt egg yolk Peritoneum Egg yolk None Gilt silver membranes became the most common variety of metal threads Cow untreated Gut None None None used in European textiles, especially those from Italy and Spain, Cow silver Gut None None Silver as well as Western Asia because they were flexible, lightweight, Cow silver heat Gut None Heat Silver Cow silver egg white Gut Egg white None Silver and inexpensive [7]. Substantial focus has been given to identi- fying the metals used in metal threads, as studies show that the composition of the metal and gold/silver ratios are suggestive of geographic origin of the metal thread [6,7,10]. Recently, a range of electron microscopy techniques and micro-Raman spectroscopy have been used to characterize cross-sections of metal threads revealing details of the production technology through study of the 3D texture [11]. Conversely, little attention has been given to identifying the membrane type or animal species used in organic metal threads, although the elucidation of this information would provide valuable insight into the origin, production technique, and use of membrane metal threads in the medieval period [1]. Identi- fication of the membrane portion of the substrate poses difficulty, especially when a textile is in a deteriorated state. Using mor- phology on the microscopic scale, differences between leather, membranous material, parchment, and vellum have been made [1,2]; however, the appearance of the substrate can be drastically altered from its original state because of decomposition, embrit- tlement, wear, and treatment damage, making visual identification indefinite and oftentimes impossible. In contrast to morphological identification, DNA amplification and molecular biology techniques have been used to identify the animal species in organic metal threads found in textiles from the 11–15th centuries [9]. Unfor- tunately, this study could only narrow down the identification to a few candidate species. Here, we have adopted a bottom-up pro- Fig. 1. 14th century Italian textile (#21714-1) from the History Museum in Graz, teomics approach to analyze a 14th c. membrane thread: the entire Austria, ©Universalmuseum Joanneum, Museum für Geschichte, Kulturhistorische Sammlung/Institute of Conservation, University of Applied Arts Vienna/Elisabeth membrane sample is characterized through a single extraction and Delvai 2017. The arrow points to where the thread was sampled. In the bottom right, digestion of the whole extract, including the membrane proteins the image of the thread was acquired with HIROX KH-8700 3D digital microscope and other binding proteins if present. The complex mixture is (Hirox-USA, Inc., NJ), courtesy of Thomas Lam (Smithsonian’s Museum Conservation separated by liquid chromatography before analysis by an Orbit- Institute). Software: PowerPoint 2013. rap Velos mass spectrometer and the data obtained are searched against a public database. In the absence of historical informa- thus revealing tissue-specific proteins, while peptides specific to tion on the membrane’s animal origin, any species can be targeted the membrane species and the egg adhesive were characterized through a proteomics database search. in untreated and treated samples. Finally, the developed protocol was applied to a membrane metal thread from a 14th century Ital- ian textile (Fig. 1), thought to be made from an animal’s internal 2. Research aims organ and not skin. To resolve the identification issue of the organic substrate of 3. Materials and methods a metal thread several centuries old, a proteomics approach was devised. Proteomics has been used successfully to identify binders 3.1. Standards [12] and collagen-based substrates such as parchment [13], but has never been used to characterize membrane metal threads. The The gilt membrane reference standards were prepared at the aim of this project is to show that a complex organic substrate, Universität für angewandte Kunst (University of Applied Arts composed of a membrane base and protein binders, can be com- Vienna, Austria) based on what is known of traditional protocols prehensively characterized, including the type and species of the [14,15].
Recommended publications
  • A Single-Cell Transcriptional Atlas Identifies Extensive Heterogeneity in the Cellular Composition of Tendons
    bioRxiv preprint doi: https://doi.org/10.1101/801266; this version posted October 10, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. A single-cell transcriptional atlas identifies extensive heterogeneity in the cellular composition of tendons Jacob B Swanson1, Andrea J De Micheli2, Nathaniel P Disser1, Leandro M Martinez1, Nicholas R Walker1,3, Benjamin D Cosgrove2, Christopher L Mendias1,3,* 1Hospital for Special Surgery, New York, NY, USA 2Meining School of Biomedical Engineering, Cornell University, Ithaca, NY, USA 3Department of Physiology and Biophysics, Weill Cornell Medical College, New York, NY, USA *Corresponding Author Christopher Mendias, PhD Hospital for Special Surgery 535 E 70th St New York, NY 10021 USA +1 212-606-1785 [email protected] Keywords: tenocyte; tendon fibroblast; pericyte; single-cell RNA sequencing bioRxiv preprint doi: https://doi.org/10.1101/801266; this version posted October 10, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Tendon is a dense, hypocellular connective tissue that transmits forces between muscles and bones. Cellular heterogeneity is increasingly recognized as an important factor in the biological basis of tissue homeostasis and disease, but little is known about the diversity of cells that populate tendon. Our objective was to explore the heterogeneity of cells in mouse Achilles tendons using single-cell RNA sequencing. We identified 13 unique cell types in tendons, including 4 previously undescribed populations of fibroblasts.
    [Show full text]
  • A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
    Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated.
    [Show full text]
  • The Ribosomal Prolyl-Hydroxylase OGFOD1 Decreases During Cardiac Differentiation and Modulates Translation and Splicing
    The ribosomal prolyl-hydroxylase OGFOD1 decreases during cardiac differentiation and modulates translation and splicing Andrea Stoehr, … , Jizhong Zou, Elizabeth Murphy JCI Insight. 2019. https://doi.org/10.1172/jci.insight.128496. Research In-Press Preview Cardiology The mechanisms regulating translation and splicing are not well understood. We provide insight into a new regulator of translation, OGFOD1 (2-oxoglutarate and iron dependent oxygenase domain-containing protein 1), which is a prolyl- hydroxylase that catalyzes the posttranslational hydroxylation of Pro-62 in the small ribosomal protein S23. We show that deletion of OGFOD1 in an in vitro model of human cardiomyocytes decreases translation of specific proteins (e.g., RNA- binding proteins) and alters splicing. RNA sequencing showed poor correlation between changes in mRNA and protein synthesis, suggesting that posttranscriptional regulation was the primary cause for the observed differences. We found that loss of OGFOD1 and the resultant alterations in protein translation modulates the cardiac proteome, shifting it towards higher protein amounts of sarcomeric proteins such as cardiac troponins, titin and cardiac myosin binding protein C. Furthermore, we found a decrease of OGFOD1 during cardiomyocyte differentiation. These results suggest that loss of OGFOD1 modulates protein translation and splicing, thereby leading to alterations in the cardiac proteome and highlight the role of altered translation and splicing in regulating the proteome.. Find the latest version: https://jci.me/128496/pdf
    [Show full text]
  • Non-Muscle Myosin 2A (NM2A): Structure, Regulation and Function
    cells Review Non-Muscle Myosin 2A (NM2A): Structure, Regulation and Function Cláudia Brito 1,2 and Sandra Sousa 1,* 1 Group of Cell Biology of Bacterial Infections, i3S-Instituto de Investigação e Inovação em Saúde, IBMC, Universidade do Porto, 4200-135 Porto, Portugal; [email protected] 2 Programa Doutoral em Biologia Molecular e Celular (MCBiology), Instituto de Ciências Biomédicas Abel Salazar, Universidade do Porto, 4099-002 Porto, Portugal * Correspondence: [email protected] Received: 19 May 2020; Accepted: 29 June 2020; Published: 1 July 2020 Abstract: Non-muscle myosin 2A (NM2A) is a motor cytoskeletal enzyme with crucial importance from the early stages of development until adulthood. Due to its capacity to convert chemical energy into force, NM2A powers the contraction of the actomyosin cytoskeleton, required for proper cell division, adhesion and migration, among other cellular functions. Although NM2A has been extensively studied, new findings revealed that a lot remains to be discovered concerning its spatiotemporal regulation in the intracellular environment. In recent years, new functions were attributed to NM2A and its activity was associated to a plethora of illnesses, including neurological disorders and infectious diseases. Here, we provide a concise overview on the current knowledge regarding the structure, the function and the regulation of NM2A. In addition, we recapitulate NM2A-associated diseases and discuss its potential as a therapeutic target. Keywords: non-muscle myosin 2A (NM2A); NM2A activity regulation; NM2A filament assembly; actomyosin cytoskeleton; cell migration; cell adhesion; plasma membrane blebbing 1. Superfamily of Myosins The cell cytoskeleton is an interconnected and dynamic network of filaments essential for intracellular organization and cell shape maintenance.
    [Show full text]
  • A Master Autoantigen-Ome Links Alternative Splicing, Female Predilection, and COVID-19 to Autoimmune Diseases
    bioRxiv preprint doi: https://doi.org/10.1101/2021.07.30.454526; this version posted August 4, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. A Master Autoantigen-ome Links Alternative Splicing, Female Predilection, and COVID-19 to Autoimmune Diseases Julia Y. Wang1*, Michael W. Roehrl1, Victor B. Roehrl1, and Michael H. Roehrl2* 1 Curandis, New York, USA 2 Department of Pathology, Memorial Sloan Kettering Cancer Center, New York, USA * Correspondence: [email protected] or [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.07.30.454526; this version posted August 4, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Abstract Chronic and debilitating autoimmune sequelae pose a grave concern for the post-COVID-19 pandemic era. Based on our discovery that the glycosaminoglycan dermatan sulfate (DS) displays peculiar affinity to apoptotic cells and autoantigens (autoAgs) and that DS-autoAg complexes cooperatively stimulate autoreactive B1 cell responses, we compiled a database of 751 candidate autoAgs from six human cell types. At least 657 of these have been found to be affected by SARS-CoV-2 infection based on currently available multi-omic COVID data, and at least 400 are confirmed targets of autoantibodies in a wide array of autoimmune diseases and cancer.
    [Show full text]
  • New Partners Identified by Mass Spectrometry Assay Reveal Functions of NCAM2 in Neural Cytoskeleton Organization
    International Journal of Molecular Sciences Article New Partners Identified by Mass Spectrometry Assay Reveal Functions of NCAM2 in Neural Cytoskeleton Organization Antoni Parcerisas 1,2,3,*,† , Alba Ortega-Gascó 1,2,† , Marc Hernaiz-Llorens 1,2 , Maria Antonia Odena 4, Fausto Ulloa 1,2, Eliandre de Oliveira 4, Miquel Bosch 3 , Lluís Pujadas 1,2 and Eduardo Soriano 1,2,* 1 Department of Cell Biology, Physiology and Immunology, University of Barcelona and Institute of Neurosciences, 08028 Barcelona, Spain; [email protected] (A.O.-G.); [email protected] (M.H.-L.); [email protected] (F.U.); [email protected] (L.P.) 2 Centro de Investigación Biomédica en Red sobre Enfermedades Neurodegenerativas (CIBERNED), 28031 Madrid, Spain 3 Department of Basic Sciences, Universitat Internacional de Catalunya, 08195 Sant Cugat del Vallès, Spain; [email protected] 4 Plataforma de Proteòmica, Parc Científic de Barcelona (PCB), 08028 Barcelona, Spain; [email protected] (M.A.O.); [email protected] (E.d.O.) * Correspondence: [email protected] (A.P.); [email protected] (E.S.) † A.P. and A.O.-G. contributed equally. Abstract: Neuronal cell adhesion molecule 2 (NCAM2) is a membrane protein with an important role in the morphological development of neurons. In the cortex and the hippocampus, NCAM2 is essential for proper neuronal differentiation, dendritic and axonal outgrowth and synapse forma- tion. However, little is known about NCAM2 functional mechanisms and its interactive partners Citation: Parcerisas, A.; during brain development. Here we used mass spectrometry to study the molecular interactome Ortega-Gascó, A.; Hernaiz-Llorens, of NCAM2 in the second postnatal week of the mouse cerebral cortex.
    [Show full text]
  • Inositol Polyphosphate Multikinase Is a Coactivator for Serum Response Factor-Dependent Induction of Immediate Early Genes
    Inositol polyphosphate multikinase is a coactivator for serum response factor-dependent induction of immediate early genes Eunha Kima,1, Richa Tyagib,1, Joo-Young Leea, Jina Parka, Young-ran Kima, Jiyoon Beona, Po Yu Chenb, Jiyoung Y. Chab, Solomon H. Snyderb,c,d,2, and Seyun Kima,e,2 aDepartment of Biological Sciences and eKAIST Institute for the BioCentury, Korea Advanced Institute of Science and Technology, Daejeon 305-701, Korea; and bThe Solomon H. Snyder Department of Neuroscience, cDepartment of Psychiatry and Behavioral Sciences, and dDepartment of Pharmacology and Molecular Sciences, The Johns Hopkins University School of Medicine, Baltimore, MD 21205 Contributed by Solomon H. Snyder, November 1, 2013 (sent for review August 13, 2013) Inositol polyphosphate multikinase (IPMK) is a notably pleiotropic We monitored expression of RNA for a wide range of genes in protein. It displays both inositol phosphate kinase and phospha- a microarray analysis in wild-type and IPMK-deleted mouse tidylinositol kinase catalytic activities. Noncatalytically, IPMK stabil- embryonic fibroblasts (MEFs) in the presence of serum (Fig. 1 izes the mammalian target of rapamycin complex 1 and acts as a and Fig. S1A). Over 1,400 genes are down-regulated by IPMK transcriptional coactivator for CREB-binding protein/E1A binding deletion whereas 767 are up-regulated. Among the down-regulated protein p300 and tumor suppressor protein p53. Serum response genes are a substantial number of immediate early genes that factor (SRF) is a major transcription factor for a wide range of contain serum response element (SRE) in their promoters and immediate early genes. We report that IPMK, in a noncatalytic are well-known as SRF targets (Fig.
    [Show full text]
  • Understanding Lamin A/C and Its Roles in Disease
    UNDERSTANDING LAMIN A/C AND ITS ROLES IN DISEASE PATHOLOGIES AUDREY WANG SHIMEI BSC (HONS.), NANYANG TECHNOLOGICAL UNIVERSITY A THESIS SUBMITTED FOR THE DEGREE OF DOCTOR OF PHILOSOPHY DEPARTMENT OF BIOLOGICAL SCIENCES NATIONAL UNIVERSITY OF SINGAPORE 2014 i ii ACKNOWLEDGEMENTS I would like to express my sincere gratitude to Professor Colin L. Stewart (THE BOSS) for his continuous support of my PhD study. His guidance, motivation and most importantly, his quirky sense of humour have made these six years a great learning journey. His unsurpassed knowledge of lamins has opened my eyes to the world of nuclear dynamics. His exquisite taste in excellent wines, good food and foresight in choosing awesome people for the group made everything better. I would like to thank my mentor Dr. Henning Horn, who has been a great teacher to me on both academic and personal level. I’m extremely grateful to him for all his advice at work and personal matters, through good and difficult times. I also thank each and everyone in the BS lab for their great advice, support and friendship. I am very blessed to be in this lab and could not have asked for better folks to work with. In particular, Alex, Hen, Rafidah, Xiaoqian, Esther and Gracy who have helped in more ways than one, and Tinka, Dave, Anna for helping to read through bits and pieces of this thesis. I also must thank my collaborators from Ludwig-Maximilians University Munich: the late Prof Boris Joffe whom, sadly, I never met in person, and a very kind and brilliant scientist, Dr Irina Solovei.
    [Show full text]
  • Myosin (MYL6) Rabbit Polyclonal Antibody – TA349409 | Origene
    OriGene Technologies, Inc. 9620 Medical Center Drive, Ste 200 Rockville, MD 20850, US Phone: +1-888-267-4436 [email protected] EU: [email protected] CN: [email protected] Product datasheet for TA349409 Myosin (MYL6) Rabbit Polyclonal Antibody Product data: Product Type: Primary Antibodies Applications: IHC, WB Recommended Dilution: ELISA: 1000-2000, WB: 200-1000, IHC: 50-200 Reactivity: Human, Mouse, Rat Host: Rabbit Isotype: IgG Clonality: Polyclonal Immunogen: Fusion protein of human MYL6 Formulation: pH7.4 PBS, 0.05% NaN3, 40% Glyceroln Concentration: lot specific Purification: Antigen affinity purification Conjugation: Unconjugated Storage: Store at -20°C as received. Stability: Stable for 12 months from date of receipt. Predicted Protein Size: 17 kDa Gene Name: myosin light chain 6 Database Link: NP_524147 Entrez Gene 17904 MouseEntrez Gene 685867 RatEntrez Gene 4637 Human P60660 Background: Myosin is a hexameric ATPase cellular motor protein. It is composed of two heavy chains, two nonphosphorylatable alkali light chains, and two phosphorylatable regulatory light chains. This gene encodes a myosin alkali light chain that is expressed in smooth muscle and non- muscle tissues. Genomic sequences representing several pseudogenes have been described and two transcript variants encoding different isoforms have been identified for this gene. Synonyms: ESMLC; LC17; LC17-GI; LC17-NM; LC17A; LC17B; MLC-3; MLC1SM; MLC3NM; MLC3SM Protein Families: Druggable Genome Protein Pathways: Vascular smooth muscle contraction This product
    [Show full text]
  • The Use of Genetic Analyses and Functional Assays for the Interpretation of Rare Variants in Pediatric Heart Disease
    The use of genetic analyses and functional assays for the interpretation of rare variants in pediatric heart disease A dissertation submitted to the Division of Graduate Studies and Research, University of Cincinnati in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Molecular Genetics by Jeffrey A. Schubert Bachelor of Science, Mount St. Joseph University, 2012 Committee Chair: Stephanie M. Ware, M.D., Ph.D. Edmund Choi, Ph.D. Benjamin Landis, M.D. Anil Menon, Ph.D. David Wieczorek, Ph.D. Molecular Genetics, Biochemistry, and Microbiology Graduate Program College of Medicine, University of Cincinnati Cincinnati, Ohio, USA, 2018 ABSTRACT The use of next generation technologies such as whole exome sequencing (WES) has paved the way for discovering novel causes of Mendelian diseases. This has been demonstrated in pediatric heart diseases, including cardiomyopathy (CM) and familial thoracic aortic aneurysm (TAA). Each of these conditions carries a high risk of a serious cardiac event, including sudden heart failure or aortic rupture, which are often fatal. Patients with either disease can be asymptomatic before presenting with these events, which necessitates early diagnosis. Though there are many known genetic causes of disease for both conditions, there is still room for discovery of novel pathogenic genes and variants, as many patients have an undefined genetic diagnosis. WES covers the protein-coding portion of the genome, which yields a massive amount of data, though it comprises only 1% of the genome. Sorting and filtering sequencing information to identify (sometimes) a single base pair change responsible for the patient phenotype is challenging. Further, interpreting identified candidate variants must be done according to strict standards, which makes it difficult to definitively say whether a coding change is pathogenic or benign.
    [Show full text]
  • Screening Differential Mirnas Responsible for Permeability Increase in Huvecs Infected with Influenza a Virus
    RESEARCH ARTICLE Screening differential miRNAs responsible for permeability increase in HUVECs infected with influenza A virus Shujing Zhang1, Ying Wu2*, Zinan Xuan2, Xiaoming Chen2, Junjie Zhang2, Dongyu Ge1, Xudan Wang2 1 Scientific Research Center, Beijing University of Chinese Medicine, Beijing, China, 2 Department of Microbiology and Immunology, School of Life Sciences, Beijing University of Chinese Medicine, Beijing, China a1111111111 a1111111111 * [email protected] a1111111111 a1111111111 a1111111111 Abstract Severe influenza infections are featured by acute lung injury, a syndrome of increased pul- monary microvascular permeability. A growing number of evidences have shown that influ- enza A virus induces cytoskeletal rearrangement and permeability increase in endothelial OPEN ACCESS cells. Although miRNA's involvement in the regulation of influenza virus infection and endo- Citation: Zhang S, Wu Y, Xuan Z, Chen X, Zhang J, Ge D, et al. (2017) Screening differential miRNAs thelial cell (EC) function has been well documented, little is known about the miRNA profiles responsible for permeability increase in HUVECs in influenza-infected endothelial cells. Using human umbilical vein endothelial cells infected with influenza A virus. PLoS ONE 12(10): (HUVECs) as cell models, the present study aims to explore the differential miRNAs in influ- e0186477. https://doi.org/10.1371/journal. enza virus-infected ECs and analyze their target genes involved in EC permeability regula- pone.0186477 tion. As the results showed, permeability increased and F-actin cytoskeleton reorganized Editor: Balaji Manicassamy, The University of after HUVECs infected with influenza A virus (CA07 or PR8) at 30 MOI. MicroRNA microar- Chicago, UNITED STATES ray revealed a multitude of miRNAs differentially expressed in HUVECs after influenza virus Received: April 1, 2017 infection.
    [Show full text]
  • Hedgehog-Independent Overexpression of Transforming Growth Factor-ß1 in Rhabdomyosarcoma of Patched1 Mutant Mice
    405-412 4/7/07 11:15 Page 405 INTERNATIONAL JOURNAL OF ONCOLOGY 31: 405-412, 2007 405 Hedgehog-independent overexpression of transforming growth factor-ß1 in rhabdomyosarcoma of Patched1 mutant mice MELANIE EICHENMÜLLER1, REGINE BAUER2, DIETRICH VON SCHWEINITZ1, HEIDI HAHN2 and ROLAND KAPPLER1,2 1Pediatric Surgical Clinic, Dr. von Hauner Children's Hospital, Ludwig-Maximilians-University Munich, D-80337 Munich; 2Institute of Human Genetics, University of Goettingen, D-37073 Goettingen, Germany Received March 16, 2007; Accepted May 11, 2007 Abstract. The tumor suppressor gene PATCHED1 (PTCH1) Introduction is a member of the hedgehog signaling pathway and causatively associated with several human sporadic and RMS is the most common soft-tissue sarcoma in children, familial cancers, including those of the skin, muscle and representing approximately 9% of pediatric solid cancers (1). brain. Inactivation of one Ptch1 allele in the mouse results in This tumor is thought to arise as a consequence of regulatory the development of medulloblastoma and rhabdomyosarcoma disruption of skeletal muscle progenitor cell growth and (RMS), the latter being a malignant tumor of skeletal muscle differentiation, yet the precise cell of origin is not entirely clear origin. To identify genes involved in the pathogenesis of (2). The two major histopathological classifications of RMS, Ptch1-associated RMS, we have monitored the expression of the embryonal form (ERMS) and the rarer alveolar form 588 genes in RMS and normal skeletal muscle (SM) of (ARMS), are described to distinguish the two types not only heterozygous Ptch1neo67/+ mice using cDNA array technology. regarding their histology and their degree of differentiation, RMS displayed increased transcript levels of several genes but also their prognosis (3).
    [Show full text]