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Development and Evaluation of Rrna Targeted in Situ Probes and Phylogenetic Relationships of Freshwater Fungi
Development and evaluation of rRNA targeted in situ probes and phylogenetic relationships of freshwater fungi vorgelegt von Diplom-Biologin Christiane Baschien aus Berlin Von der Fakultät III - Prozesswissenschaften der Technischen Universität Berlin zur Erlangung des akademischen Grades Doktorin der Naturwissenschaften - Dr. rer. nat. - genehmigte Dissertation Promotionsausschuss: Vorsitzender: Prof. Dr. sc. techn. Lutz-Günter Fleischer Berichter: Prof. Dr. rer. nat. Ulrich Szewzyk Berichter: Prof. Dr. rer. nat. Felix Bärlocher Berichter: Dr. habil. Werner Manz Tag der wissenschaftlichen Aussprache: 19.05.2003 Berlin 2003 D83 Table of contents INTRODUCTION ..................................................................................................................................... 1 MATERIAL AND METHODS .................................................................................................................. 8 1. Used organisms ............................................................................................................................. 8 2. Media, culture conditions, maintenance of cultures and harvest procedure.................................. 9 2.1. Culture media........................................................................................................................... 9 2.2. Culture conditions .................................................................................................................. 10 2.3. Maintenance of cultures.........................................................................................................10 -
Molecular Phylogenetic Studies in the Genus Amanita
1170 Molecular phylogenetic studies in the genus Amanita I5ichael Weiß, Zhu-Liang Yang, and Franz Oberwinkler Abstracl A group of 49 Amanita species that had been thoroughly examined morphologically and amtomically was analyzed by DNA sequence compadson to estimate natural groups and phylogenetic rclationships within the genus. Nuclear DNA sequences coding for a part of the ribosomal large subunit were determined and evaluated using neighbor-joining with bootstrap analysis, parsimony analysis, conditional clustering, and maximum likelihood methods, Sections Amanita, Caesarea, Vaginatae, Validae, Phalloideae, and Amidella were substantially confirmed as monophyletic groups, while the monophyly of section Lepidell.t remained unclear. Branching topologies between and within sections could also pafiially be derived. Stbgenera Amanita an'd Lepidella were not supported. The Mappae group was included in section Validae. Grouping hypotheses obtained by DNA analyses are discussed in relation to the distribution of morphological and anatomical chamcters in the studied species. Key words: fungi, basidiomycetes phylogeny, Agarrcales, Amanita systematics, large subunit rDNA, 28S. R6sum6 : A partir d'un groupe de 49 esp,ces d'Amanita prdalablement examinees morphologiquement et anatomiquement, les auteurs ont utilisd la comparaison des s€quences d'ADN pour ddfinir les groupes naturels et les relations phylog6ndtiques de ce genre. Les sdquences de I'ADN nucl6aire codant pour une partie de la grande sous-unit6 ribosomale ont 6t6 ddterminEes et €valu6es en utilisant l'analyse par liaison en lacet avec le voisin (neighbor-joining with bootstrap), l'analyse en parcimonie, le rcgroupement conditionnel et les m€thodes de ressemblance maximale. Les rdsultats confirment substantiellement les sections Afiarira, Caesarea, Uaqinatae, Ualidae, Phalloideae et Amidella, comme groupes monophyldtiques, alors que la monophylie de la section Lepidella demerxe obscure. -
Why Mushrooms Have Evolved to Be So Promiscuous: Insights from Evolutionary and Ecological Patterns
fungal biology reviews 29 (2015) 167e178 journal homepage: www.elsevier.com/locate/fbr Review Why mushrooms have evolved to be so promiscuous: Insights from evolutionary and ecological patterns Timothy Y. JAMES* Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109, USA article info abstract Article history: Agaricomycetes, the mushrooms, are considered to have a promiscuous mating system, Received 27 May 2015 because most populations have a large number of mating types. This diversity of mating Received in revised form types ensures a high outcrossing efficiency, the probability of encountering a compatible 17 October 2015 mate when mating at random, because nearly every homokaryotic genotype is compatible Accepted 23 October 2015 with every other. Here I summarize the data from mating type surveys and genetic analysis of mating type loci and ask what evolutionary and ecological factors have promoted pro- Keywords: miscuity. Outcrossing efficiency is equally high in both bipolar and tetrapolar species Genomic conflict with a median value of 0.967 in Agaricomycetes. The sessile nature of the homokaryotic Homeodomain mycelium coupled with frequent long distance dispersal could account for selection favor- Outbreeding potential ing a high outcrossing efficiency as opportunities for choosing mates may be minimal. Pheromone receptor Consistent with a role of mating type in mediating cytoplasmic-nuclear genomic conflict, Agaricomycetes have evolved away from a haploid yeast phase towards hyphal fusions that display reciprocal nuclear migration after mating rather than cytoplasmic fusion. Importantly, the evolution of this mating behavior is precisely timed with the onset of diversification of mating type alleles at the pheromone/receptor mating type loci that are known to control reciprocal nuclear migration during mating. -
Influence of Tree Species on Richness and Diversity of Epigeous Fungal
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Archive Ouverte en Sciences de l'Information et de la Communication fungal ecology 4 (2011) 22e31 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/funeco Influence of tree species on richness and diversity of epigeous fungal communities in a French temperate forest stand Marc BUE´Ea,*, Jean-Paul MAURICEb, Bernd ZELLERc, Sitraka ANDRIANARISOAc, Jacques RANGERc,Re´gis COURTECUISSEd, Benoıˆt MARC¸AISa, Franc¸ois LE TACONa aINRA Nancy, UMR INRA/UHP 1136 Interactions Arbres/Microorganismes, 54280 Champenoux, France bGroupe Mycologique Vosgien, 18 bis, place des Cordeliers, 88300 Neufchaˆteau, France cINRA Nancy, UR 1138 Bioge´ochimie des Ecosyste`mes Forestiers, 54280 Champenoux, France dUniversite´ de Lille, Faculte´ de Pharmacie, F59006 Lille, France article info abstract Article history: Epigeous saprotrophic and ectomycorrhizal (ECM) fungal sporocarps were assessed during Received 30 September 2009 7 yr in a French temperate experimental forest site with six 30-year-old mono-specific Revision received 10 May 2010 plantations (four coniferous and two hardwood plantations) and one 150-year-old native Accepted 21 July 2010 mixed deciduous forest. A total of 331 fungal species were identified. Half of the fungal Available online 6 October 2010 species were ECM, but this proportion varied slightly by forest composition. The replace- Corresponding editor: Anne Pringle ment of the native forest by mono-specific plantations, including native species such as beech and oak, considerably altered the diversity of epigeous ECM and saprotrophic fungi. Keywords: Among the six mono-specific stands, fungal diversity was the highest in Nordmann fir and Conifer plantation Norway spruce plantations and the lowest in Corsican pine and Douglas fir plantations. -
Russulas of Southern Vancouver Island Coastal Forests
Russulas of Southern Vancouver Island Coastal Forests Volume 1 by Christine Roberts B.Sc. University of Lancaster, 1991 M.S. Oregon State University, 1994 A Dissertation Submitted in Partial Fulfillment of the Requirements for the Degree of DOCTOR OF PHILOSOPHY in the Department of Biology © Christine Roberts 2007 University of Victoria All rights reserved. This dissertation may not be reproduced in whole or in part, by photocopying or other means, without the permission of the author. Library and Bibliotheque et 1*1 Archives Canada Archives Canada Published Heritage Direction du Branch Patrimoine de I'edition 395 Wellington Street 395, rue Wellington Ottawa ON K1A0N4 Ottawa ON K1A0N4 Canada Canada Your file Votre reference ISBN: 978-0-494-47323-8 Our file Notre reference ISBN: 978-0-494-47323-8 NOTICE: AVIS: The author has granted a non L'auteur a accorde une licence non exclusive exclusive license allowing Library permettant a la Bibliotheque et Archives and Archives Canada to reproduce, Canada de reproduire, publier, archiver, publish, archive, preserve, conserve, sauvegarder, conserver, transmettre au public communicate to the public by par telecommunication ou par Plntemet, prefer, telecommunication or on the Internet, distribuer et vendre des theses partout dans loan, distribute and sell theses le monde, a des fins commerciales ou autres, worldwide, for commercial or non sur support microforme, papier, electronique commercial purposes, in microform, et/ou autres formats. paper, electronic and/or any other formats. The author retains copyright L'auteur conserve la propriete du droit d'auteur ownership and moral rights in et des droits moraux qui protege cette these. -
Auriculariales, Basidiomycota) Evidenced by Morphological Characters and Phylogenetic Analyses in China
Phytotaxa 437 (2): 051–059 ISSN 1179-3155 (print edition) https://www.mapress.com/j/pt/ PHYTOTAXA Copyright © 2020 Magnolia Press Article ISSN 1179-3163 (online edition) https://doi.org/10.11646/phytotaxa.437.2.1 Heteroradulum yunnanensis sp. nov. (Auriculariales, Basidiomycota) evidenced by morphological characters and phylogenetic analyses in China QIAN-XIN GUAN1,2, CHAO-MAO LIU2, TANG-JIE ZHAO3 & CHANG-LIN ZHAO1,2,4* 1Key Laboratory for Forest Resources Conservation and Utilization in the Southwest Mountains of China, Ministry of Education, Southwest Forestry University, Kunming 650224, P.R. China 2College of Biodiversity Conservation, Southwest Forestry University, Kunming 650224, P.R. China 3Wenshan Forestry Research Institute, Wenshan, Yunnan 663300, P.R. China 4Key Laboratory of Forest Disaster Warning and Control of Yunnan Province, Southwest Forestry University, Kunming 650224, P.R. China *Corresponding author’s e-mail: [email protected] Abstract A new wood-inhabiting fungal species, Heteroradulum yunnanensis, is proposed based on a combination of morphological features and molecular evidence. The species is characterized by an annual growth habit, resupinate basidiomata with odontoid hymenial surface (50–100 µm long), more or less pronounced yellow stains in older basidiomata, a monomitic hyphal system with thin-walled, clamped generative hyphae and two to three-celled basidia and cylindrical, hyaline, thin- walled, smooth, IKI–, CB– basidiospores measuring as 17–24 ×5–8 µm. Sequences of ITS and LSU nrRNA gene regions of the studied samples were generated, and phylogenetic analyses were performed with maximum likelihood, maximum parsimony and bayesian inference methods. The phylogenetic analyses based on molecular data of ITS+nLSU sequences showed that Heteroradulum yunnanensis formed a monophyletic lineage with a strong support (100% BS, 100% BP, 1.00 BPP) and then grouped with H. -
Preliminary Classification of Leotiomycetes
Mycosphere 10(1): 310–489 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/7 Preliminary classification of Leotiomycetes Ekanayaka AH1,2, Hyde KD1,2, Gentekaki E2,3, McKenzie EHC4, Zhao Q1,*, Bulgakov TS5, Camporesi E6,7 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 4Landcare Research Manaaki Whenua, Private Bag 92170, Auckland, New Zealand 5Russian Research Institute of Floriculture and Subtropical Crops, 2/28 Yana Fabritsiusa Street, Sochi 354002, Krasnodar region, Russia 6A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy. 7A.M.B. Circolo Micologico “Giovanni Carini”, C.P. 314 Brescia, Italy. Ekanayaka AH, Hyde KD, Gentekaki E, McKenzie EHC, Zhao Q, Bulgakov TS, Camporesi E 2019 – Preliminary classification of Leotiomycetes. Mycosphere 10(1), 310–489, Doi 10.5943/mycosphere/10/1/7 Abstract Leotiomycetes is regarded as the inoperculate class of discomycetes within the phylum Ascomycota. Taxa are mainly characterized by asci with a simple pore blueing in Melzer’s reagent, although some taxa have lost this character. The monophyly of this class has been verified in several recent molecular studies. However, circumscription of the orders, families and generic level delimitation are still unsettled. This paper provides a modified backbone tree for the class Leotiomycetes based on phylogenetic analysis of combined ITS, LSU, SSU, TEF, and RPB2 loci. In the phylogenetic analysis, Leotiomycetes separates into 19 clades, which can be recognized as orders and order-level clades. -
Bacău Preliminary Research
COMPLEXUL MUZEAL DE ŞTIINŢELE NATURII „ION BORCEA” BACĂU STUDII ŞI COMUNICĂRI 2010 Vol. 23: 14 – 23 PRELIMINARY RESEARCH CONCERNING THE DIVERSITY OF MACROMYCETES IN PRALEA BROOK BASIN (BACĂU COUNTY) OTILIA CARMEN PAVEL * ABSTRACT Mycological research conducted in the Pralea brook basin (Bacău County) showed the diversity of the macromycete species in the phytocenoses of the following associations: Hieracio transsilvanico – Piceetum Pawlowski et Br.-Bl. 1939, Pulmonario rubrae - Fagetum (Soó 1964) Täuber 1987, Leucanthemo waldsteinii – Fagetum (Soó 1964) Täuber 1987, Symphyto cordati – Fagetum Vida 1959. There have been identified 205 taxa from Fungi kingdom out of which 20 species belong to the Ascomycota phylum and 185 species to the Basidiomycota phylum. Key words: fungi, macromycetes, museum, Pralea, Căiuţ, Bacău, Romania Introduction Material and method The Pralea brook is an important tributary to The mycological material was collected in Trotuş river, with 22 km length and is situated on the phytocenoses of the associations: Hieracio territory of the Căiuţi commune, Bacău County (fig. transilvanico-Piceetum Pawlowski et Br.-Bt. 1939, 1, 2). The hydrographical basin occupies a 65 km2 Pulmonario rubrae - Fagetum (Soó 1964) Täuber surface and it stretches between 46°11' N and 26°46' 1987, Leucanthemo waldsteinii – Fagetum E, at altitudes varying from 155 m (at emptying (Soó1964) Täuber 1987, Symphyto cordati – point in Trotuş river) to 771 m (at Coada Văii Baba Fagetum Vida 1959. summit). The mycological research was conducted From a geological point of view, the whole during 2009 – 2010 in 4 forests situated in the basin of Pralea brook is included in the superior basin of Pralea brook: Ursoaia Mică forest Subcarpathian piedmont developed East to Ouşorul (PUm), Coconaşi forest (PC), Bourului forest (PB), summit which is the northernmost sector of Vrancea Pralea Ursoaia Mare forest (PUM) (tab. -
Inventory of Ectomycorrizal Fungi
PINHO-ALM EIDA F., BASÍLIO C., de OLIVEIRA P. - 1999 - Inventory of ectomycorrhizal fungi associated with a "relic" holm-oak tree (Quercus rotundifolia) in two successive winters. Documents Mycologiques 29 (115) : 57 - 68 Inventory of ectomycorrizal fungi associated with a "relic" holm-oak tree (Quercus rotundifolia) in two successive winters Fátima Pinho-Almeida*, Carmo Basílio*, and Paulo de Oliveira ** *Centro de Micologia da Universidade de Lisboa, Rua da Escola Politécnica, 58, P-1250 Lisboa **Departamento de Biologia, Universidade de Évora,Apartado 4, 7002-554 ÉVORA, Portugal Abstract Holm-oak (Quercus rotundifolia), either as forests or as seminatural stands (the “montado” systems), occupies a vast area of land in Portugal, forming an important ecological and economical reserve that remains very little studied. A «relic» tree of this species, left from a montado stand that was replaced by cereals decades ago and now surrounded by Eucalyptus globulus, was visited during two winter carpophore fruiting seasons to scrutinize the ectomycorrhizal species associated with its root system. The sampled sporophores were identified and mapped relative to the oak trunk. Of thirty nine different higher fungi species that have been tentatively identified after four gatherings, twenty nine were problably ectomycorrhizal. Russula spp. (a total of ten species) dominated in the first gathering of each season while Lactarius cremor and Helvella lacunosa dominated in the second of the first and second season, respectively. Practically none of the holm oak-associated mutualistic or facultative species were found in the surrunding eucalyptus plantation. This study will be continued and extended to other locations in the long term, in order to provide data on the ecology of the holm oak ectomycorrhizal associates and to support the molecular identification of fungal isolates obtained from holm oak ectomycorrhizas. -
Micolucus 5 2018
MICOLUCUS • SOCIEDADE MICOLÓXICA LUCUS NÚMERO 5 • ANO 2018 NÚME R O 5•ANO2018 Limiar .............................................................................................. 1 é unha publicación da Sociedade Micolóxica Lucus, Biodiversidade fúnxica da Reserva da Biosfera Terras do Miño: CIF: G27272954 Lentinellus tridentinus. Depósito Legal: LU 140-2014 JOSE CASTRO................................................................................... 2 ISSN edición impresa: 2386-8872 ISSN edición dixital: 2387-1822 Aportaciones al conocimiento de la micobiota de la Sierra de O Courel (Lugo, España): REDACCIÓN E COORDINACIÓN: Donadinia helvelloides JULIÁN ALONSO DÍAZ...................................................................... 9 Julián Alonso Díaz Jose Castro Ferreiro Descripción de cuatro especies interesantes para la Benito Martínez Lobato micoflora de Galicia. Juan Antonio Martínez Fidalgo JOSÉ MANUEL CASTRO MARCOTE, JOSÉ MARÍA COSTA LAGO ..... 19 Alfonso Vázquez Fraga José Manuel Fernández Díaz Hongos hipogeos de la provincia de Lugo: Tuber foetidum. Cristina Gayo Cancelas JOSE CASTRO, JULIÁN ALONSO, ALFONSO VÁZQUEZ ................... 31 Jesús Javier Varela Quintas Howard Fox Fomitopsis iberica, un políporo agente de pudrición marrón. • Os artigos remitidos a SANTIAGO CORRAL ESTÉVEZ, JOSÉ MARÍA COSTA LAGO ............. 38 son revisados por asesores externos antes de ser Estudos sobre a micobiota folícola da Reserva da Biosfera aceptados ou rexeitados. Terras do Miño I: Chloroscypha chloromela. JOSE CASTRO ............................................................................... -
The Macrofungi Checklist of Liguria (Italy): the Current Status of Surveys
Posted November 2008. Summary published in MYCOTAXON 105: 167–170. 2008. The macrofungi checklist of Liguria (Italy): the current status of surveys MIRCA ZOTTI1*, ALFREDO VIZZINI 2, MIDO TRAVERSO3, FABRIZIO BOCCARDO4, MARIO PAVARINO1 & MAURO GIORGIO MARIOTTI1 *[email protected] 1DIP.TE.RIS - Università di Genova - Polo Botanico “Hanbury”, Corso Dogali 1/M, I16136 Genova, Italy 2 MUT- Università di Torino, Dipartimento di Biologia Vegetale, Viale Mattioli 25, I10125 Torino, Italy 3Via San Marino 111/16, I16127 Genova, Italy 4Via F. Bettini 14/11, I16162 Genova, Italy Abstract— The paper is aimed at integrating and updating the first edition of the checklist of Ligurian macrofungi. Data are related to mycological researches carried out mainly in some holm-oak woods through last three years. The new taxa collected amount to 172: 15 of them belonging to Ascomycota and 157 to Basidiomycota. It should be highlighted that 12 taxa have been recorded for the first time in Italy and many species are considered rare or infrequent. Each taxa reported consists of the following items: Latin name, author, habitat, height, and the WGS-84 Global Position System (GPS) coordinates. This work, together with the original Ligurian checklist, represents a contribution to the national checklist. Key words—mycological flora, new reports Introduction Liguria represents a very interesting region from a mycological point of view: macrofungi, directly and not directly correlated to vegetation, are frequent, abundant and quite well distributed among the species. This topic is faced and discussed in Zotti & Orsino (2001). Observations prove an high level of fungal biodiversity (sometimes called “mycodiversity”) since Liguria, though covering only about 2% of the Italian territory, shows more than 36 % of all the species recorded in Italy. -
9B Taxonomy to Genus
Fungus and Lichen Genera in the NEMF Database Taxonomic hierarchy: phyllum > class (-etes) > order (-ales) > family (-ceae) > genus. Total number of genera in the database: 526 Anamorphic fungi (see p. 4), which are disseminated by propagules not formed from cells where meiosis has occurred, are presently not grouped by class, order, etc. Most propagules can be referred to as "conidia," but some are derived from unspecialized vegetative mycelium. A significant number are correlated with fungal states that produce spores derived from cells where meiosis has, or is assumed to have, occurred. These are, where known, members of the ascomycetes or basidiomycetes. However, in many cases, they are still undescribed, unrecognized or poorly known. (Explanation paraphrased from "Dictionary of the Fungi, 9th Edition.") Principal authority for this taxonomy is the Dictionary of the Fungi and its online database, www.indexfungorum.org. For lichens, see Lecanoromycetes on p. 3. Basidiomycota Aegerita Poria Macrolepiota Grandinia Poronidulus Melanophyllum Agaricomycetes Hyphoderma Postia Amanitaceae Cantharellales Meripilaceae Pycnoporellus Amanita Cantharellaceae Abortiporus Skeletocutis Bolbitiaceae Cantharellus Antrodia Trichaptum Agrocybe Craterellus Grifola Tyromyces Bolbitius Clavulinaceae Meripilus Sistotremataceae Conocybe Clavulina Physisporinus Trechispora Hebeloma Hydnaceae Meruliaceae Sparassidaceae Panaeolina Hydnum Climacodon Sparassis Clavariaceae Polyporales Gloeoporus Steccherinaceae Clavaria Albatrellaceae Hyphodermopsis Antrodiella